
CHLTR00002	Putative uncharacterized protein	conserved hypothetical protein	hypothetical membrane associated protein	Putative membrane protein	Putative membrane protein	Putative membrane protein	
CHLTR00003	Glutamyl-tRNA(Gln) amidotransferase subunit C	aspartyl/glutamyl-tRNA amidotransferase subunit C EC 6.3.5.-	Asp-tRNA-Asn/Glu-tRNA-Gln amidotransferase C subunit	glutamyl-tRNA(Gln) amidotransferase subunit C	Glutamyl-tRNA(Gln) amidotransferase subunit C	Glutamyl-tRNA(Gln) amidotransferase subunit C	Glutamyl-tRNA(Gln) amidotransferase subunit C	
CHLTR00004	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	GatA	glutamyl-tRNA amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase (subunit A)	conserved gene glutamyl/tRNA (Gln) amidotransferase, A subunit	Glutamyl-tRNA(Gln) amidotransferase (subunit A)	Glutamyl-tRNA(Gln) amidotransferase subunit A	identified by match to protein family HMM PF01425; match to protein family HMM TIGR00132 glutamyl-tRNA(Gln) amidotransferase, A subunit	Glutamyl-tRNA amidotransferase subunit A	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A	glutamyl-tRNA(Gln) amidotransferase subunit A	identified by similarity to SP:O06491; match to protein family HMM PF01425; match to protein family HMM TIGR00132 glutamyl-tRNA(Gln) amidotransferase, A subunit	Glutamyl-tRNA(Gln) amidotransferase subunit A	glutamyl-tRNA Gln amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA (Gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	identified by similarity to SP:O06491; match to protein family HMM PF01425; match to protein family HMM TIGR00132 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA amidotransferase subunit A protein	Glutamyl-tRNA(Gln) amidotransferase subunit A	Mb3036c, gatA, len: 494 aa. Equivalent to Rv3011c, len: 494 aa, from Mycobacterium tuberculosis strain H37Rv, (99.4% identity in 494 aa overlap). Probable gatA, Glu-tRNA-Gln amidotransferase, subunit A (EC 6.3.5.-), equivalent to O33105|GATA|ML1702|MLCB637.13 GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE from Mycobacterium leprae (497 aa), FASTA scores: opt: 2839, E(): 3.5e-161, (88.8% identity in 492 aa overlap). Also highly similar to other Glu-tRNA-Gln amidotransferases e.g.  Q9Z580|GATA_STRCO from Streptomyces coelicolor (497 aa), FASTA scores: opt: 2231, E(): 4.5e-125, (70.3% identity in 486 aa overlap); P73558|GATA_SYNY3|SLR0877 from Synechocystis sp. strain PCC 6803 (483 aa), FASTA scores: opt: 1593, E(): 3.3e-87, (55.85% identity in 487 aa overlap); O06491|GATA_BACSU GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE from Bacillus subtilis (485 aa), FASTA scores: opt: 1389, E(): 4.3e-75, (51.7% identity in 468 aa overlap); etc. For more information about function, see citation below. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE AMIDASE FAMILY. PROBABLE GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE (SUBUNIT A) GATA (Glu-ADT SUBUNIT A)	InterProMatches:IPR004412; formation of correctly charged Gln-tRNA(Gln) through transamidation of misacylated Glu-tRNA(Gln), Biological Process: protein biosynthesis (GO:0006412), Molecular Function: glutamyl-tRNA(Gln) amidotransferase activity (GO:0017068) glutamyl-tRNA(Gln) amidotransferase (subunit A)	glutamyl-tRNA(Gln) amidotransferase subunit A	Glu-tRNAGln amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	
CHLTR00005	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	glutamyl-tRNA amidotransferase, subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Glutamyl-tRNA(Gln) amidotransferase (subunit B)	conserved gene glutamyl/tRNA (Gln) amidotransferase, B subunit	Glutamyl-tRNA(Gln) amidotransferase (subunit B)	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	identified by match to protein family HMM PF01162; match to protein family HMM PF02637; match to protein family HMM PF02934; match to protein family HMM TIGR00133 glutamyl-tRNA(Gln) amidotransferase, B subunit	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	pet112 glutamyl-tRNA(Gln) amidotransferase subunit B	identified by match to protein family HMM PF01162; match to protein family HMM PF02637; match to protein family HMM PF02934; match to protein family HMM TIGR00133 glutamyl-tRNA(Gln) amidotransferase, B subunit	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	glutamyl-tRNA Gln amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	identified by match to protein family HMM PF01162; match to protein family HMM PF02637; match to protein family HMM PF02934; match to protein family HMM TIGR00133 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Glutamyl-tRNA amidotransferase subunit B protein	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Mb3034c, gatB, len: 509 aa. Equivalent to Rv3009c, len: 509 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 509 aa overlap). Probable gatB, Glu- tRNA-Gln amidotransferase, subunit B (EC 6.3.5.-), equivalent to O33107|GATB_MYCLE|MLCB637_15 GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE from Mycobacterium leprae (509 aa), FASTA scores: opt: 2973, E(): 2.9e-173, (88.4% identity in 509 aa overlap). Also highly similar to other Glu- tRNA-Gln amidotransferases e.g.  Q9Z578|GATB|SC8D9.13 from Streptomyces coelicolor (504 aa), FASTA scores: opt: 2264, E(): 3.6e-130, (66.0% identity in 495 aa overlap); P74215|GATB_SYNY3|SLL1435 from Synechocystis sp. strain PCC 6803 (519 aa), FASTA scores: opt: 1289, E(): 6.7e-71, (42.0% identity in 485 aa overlap); Q9X100|GATB_THEMA|TM1273 GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE from Thermotoga maritima (482 aa), FASTA scores: opt: 1165, E(): 2.2e-63, (40.05% identity in 487 aa overlap); etc. For more information about function, see citation below. Similar to many members of the pet112 family. BELONGS TO THE GATB FAMILY. PROBABLE GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE (SUBUNIT B) GATB (Glu-ADT SUBUNIT B)	InterProMatches:IPR004413; formation of correctly charged Gln-tRNA(Gln) through transamidation of misacylated Glu-tRNA(Gln), Biological Process: protein biosynthesis (GO:0006412), Molecular Function: glutamyl-tRNA(Gln) amidotransferase activity (GO:0017068) glutamyl-tRNA(Gln) amidotransferase (subunit B)	glutamyl-tRNA(Gln) amidotransferase subunit B	glutamyl-tRNAGln amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	
CHLTR00006	Uncharacterized protein CT_005	Putative membrane protein	Putative membrane protein	
CHLTR00007	Uncharacterized protein CT_006	conserved hypothetical protein	hypothetical protein	Putative membrane protein	Putative membrane protein	Putative membrane protein	
CHLTR00008	Uncharacterized protein CT_007	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00009	Ribonuclease HIII	Ribonuclease	identified by similarity to EGAD:107727; match to protein family HMM PF01351; match to protein family HMM TIGR00716 ribonuclease HIII	Ribonuclease HIII	Ribonuclease HIII	ribonuclease HIII	Ribonuclease HIII	InterProMatches:IPR004641; Molecular Function: ribonuclease H activity (GO:0004523), Cellular Component: cytoplasm (GO:0005737), Biological Process: RNA metabolism (GO:0016070) ribonuclease HIII	Ribonuclease HIII	Similar to Chlamydia pneumoniae ribonuclease hIII RnhC or cpn1068 or cp0782 SWALL:RNH3_CHLPN (SWALL:Q9Z6J1) (298 aa) fasta scores: E(): 1e-78, 67.79% id in 295 aa and to Chlamydia muridarum ribonuclease hIII RnhC or tc0276 SWALL:RNH3_CHLMU (SWALL:Q9PL32) (301 aa) fasta scores: E(): 1.2e-72, 62.08% id in 298 aa ribonuclease hIII	Ribonuclease HIII	hypothetical protein, similar to ribonuclease HIII	identified by match to PFAM protein family HMM PF01351 ribonuclease HIII	Ortholog of S. aureus MRSA252 (BX571856) SAR1113 putative ribonuclease	hypothetical protein, similar to ribonuclease HIII	Ribonuclease HIII	best blastp match gb|AAK34562.1| (AE006610) putative ribonuclease HIII [Streptococcus pyogenes M1 GAS] putative ribonuclease HIII	identified by similarity to OMNI:NTL01BS02856; match to protein family HMM PF01351; match to protein family HMM TIGR00716 ribonuclease HIII, putative	Ribonuclease HII	ribonuclease HIII	Ribonuclease HIII	ribonuclease HII	hypothetical protein, similar to ribonuclease HIII	Similar to Bacillus subtilis ribonuclease HIII RnhC SW:RNH3_BACSU (P94541) (313 aa) fasta scores: E(): 8.7e-42, 45.484% id in 310 aa, and to Lactococcus lactis ribonuclease HII RnhA TR:Q9CDG3 (EMBL:AE006455) (292 aa) fasta scores: E(): 7.6e-28, 39.286% id in 308 aa putative ribonuclease	identified by similarity to SP:O07874; match to protein family HMM PF01351; match to protein family HMM TIGR00716 ribonuclease HIII	ribonuclease HIII	identified by similarity to EGAD:107727; match to protein family HMM PF01351; match to protein family HMM TIGR00716 ribonuclease HIII	similar to gi|27467751|ref|NP_764388.1| [Staphylococcus epidermidis ATCC 12228], percent identity 67 in 309 aa, BLASTP E(): e-115 putative ribonuclease HIII	Ribonuclease HIII (RNase HIII)	
CHLTR00011	Acyltransferase	Lipid A biosynthesis lauroyl acyltransferase	Similar to Leptospira interrogans lipid A biosynthesis lauroyl acyltransferase HtrB or LA4039 SWALL:Q8EZ22 (EMBL:AE011559) (323 aa) fasta scores: E(): 2.2e-09, 25.33% id in 296 aa, and to Chlorobium tepidum acyltransferase, HtrB/MsbB family CT0211 SWALL:Q8KFV9 (EMBL:AE012801) (310 aa) fasta scores: E(): 3.3e-09, 26.11% id in 314 aa putative lipid A biosynthesis-related protein	lipid A biosynthesis acyltransferase	Code: M; COG: COG1560 heat shock protein	Code: M; COG: COG1560 heat shock protein	lipid A biosynthesis acyltransferase	lipid A biosynthesis lauroyl acyltransferase	lipid A biosynthesis acyltransferase	Lipid A biosynthesis acyltransferase	acyltransferase, HtrB/MsbB family	putative lipid A acyltransferase similarity:fasta; with=UniProt:Q8KST6_RHILV (EMBL:AF510733); Rhizobium leguminosarum (biovar viciae).; lpxXL; Lipid A acyltransferase.; length=311; id 99.678; 311 aa overlap; query 1-311; subject 1-311	acyltransferase	Lipid A biosynthesis acyltransferase	lipid A biosynthesis acyltransferase	acyltransferase, HtrB/MsbB family	Lipid A biosynthesis lauroyl acyltransferase	lipid A biosynthesis acyltransferase	Lauroyl acyltransferase	lipid A biosynthesis lauroyl acyltransferase	lipid A biosynthesis lauroyl acyltransferase	lipid A biosynthesis acyltransferase PFAM: lipid A biosynthesis acyltransferase KEGG: cch:Cag_1483 acyltransferase, HtrB/MsbB family	lipid A biosynthesis lauroyl acyltransferase (heat shock protein)	lipid A biosynthesis acyltransferase PFAM: lipid A biosynthesis acyltransferase KEGG: aba:Acid345_2346 lipid A biosynthesis acyltransferase	lipid A biosynthesis acyltransferase PFAM: lipid A biosynthesis acyltransferase KEGG: hch:HCH_00023 lauroyl/myristoyl acyltransferase	lipid A biosynthesis acyltransferase PFAM: lipid A biosynthesis acyltransferase KEGG: bcn:Bcen_2468 lipid A biosynthesis acyltransferase	bacterial lipid A biosynthesis acyltransferase identified by match to protein family HMM PF03279	lipid A biosynthesis lauroyl acyltransferase	Bacterial lipid A biosynthesis acyltransferase	
CHLTR00010	HTH Transcriptional Regulator	transcription regulator containing HTH/2Fe-2S Ferredoxin domains	sigma-54 interaction/ATP-binding protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00012	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00013	Putative uncharacterized protein ybbP	conserved hypothetical protein	Putative uncharacterized protein lp_0818	identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159 conserved hypothetical protein TIGR00159	Hypothetical membrane spanning protein	conserved hypothetical protein	Hypothetical protein SE1754	Uncharacterized conserved membrane protein	conserved hypothetical containing domain DUF147 YbbP	conserved hypothetical protein	COG1624 Uncharacterized conserved protein hypothetical protein	Putative uncharacterized protein TTHA0323	Putative uncharacterized protein yedA	Similar to Streptococcus pneumoniae conserved hypothetical protein SPR1419 SWALL:Q8DP14 (EMBL:AE008512) (292 aa) fasta scores: E(): 3.3e-26, 35.65% id in 258 aa, and to Lactococcus lactis hypothetical protein YedA or LL0423 SWALL:Q9CIE0 (EMBL:AE006279) (292 aa) fasta scores: E(): 7e-26, 36.03% id in 247 aa conserved membrane protein	Putative uncharacterized protein gbs0902	conserved hypothetoical protein	identified by Glimmer2; putative conserved hypothetical protein TIGR00159	Ortholog of S. aureus MRSA252 (BX571856) SAR2254 putative membrane protein	Hypothetical protein	conserved hypothetoical protein	Hypothetical membrane spanning protein	best blastp match gb|AAK33928.1| (AE006548) conserved hypothetical protein [Streptococcus pyogenes M1 GAS] conserved hypothetical protein	identified by similarity to OMNI:NTL01LI2211; match to protein family HMM PF02457; match to protein family HMM TIGR00159 conserved hypothetical protein TIGR00159	Conserved hypothetical protein	Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT3647 SWALL:Q8A1L4 (EMBL:AE016941) (228 aa) fasta scores: E(): 3.4e-70, 84.64% id in 228 aa, and to Clostridium perfringens hypothetical protein CPE2351 CPE2351 SWALL:Q8XHX5 (EMBL:AP003194) (285 aa) fasta scores: E(): 7e-33, 43.19% id in 257 aa, and to Staphylococcus aureus conserved hypothetoical protein sav2163 or sa1967 or mw2090 SWALL:Q9RL70 (EMBL:Y09927) (269 aa) fasta scores: E(): 5.5e-30, 43.9% id in 246 aa. Possible alternative start site at codon 27 putative transmembrane protein	conserved hypothetical protein	Putative uncharacterized protein	conserved hypothetical protein	similar to unknown protein	
CHLTR00014	Cytochrome Oxidase Subunit I	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme ubiquinol oxidase subunit I, cyanide insensitive	Cyanide insensitive terminal oxidase	quinol oxidase, subunit I	Cytochrome d ubiquinol oxidase subunit I	identified by similarity to GB:CAA71555.1; match to protein family HMM PF01654 cytochrome d ubiquinol oxidase, subunit I	Cytochrome bd ubiquinol oxidase, subunit I	cytochrome bd ubiquinol oxidase, subunit I	Cytochrome bd ubiquinol oxidase, subunit I	Cytochrome bd-type quinol oxidase, subunit 1 COG1271	cytochrome D ubiquinol oxidase subunit I EC 1.10.3.-	cytochrome bd ubiquinol oxidase, subunit I	Cytochrome bd ubiquinol oxidase, subunit I	Cytochrome bd-1 oxidase, subunit I	cyanide insensitive terminal oxidase identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	cytochrome d ubiquinol oxidase subunit I	cytochrome bd ubiquinol oxidase, subunit I	cytochrome bd ubiquinol oxidase, subunit I	cytochrome bd ubiquinol oxidase, subunit I PFAM: cytochrome bd ubiquinol oxidase, subunit I KEGG: aba:Acid345_3252 cytochrome bd ubiquinol oxidase, subunit I	cytochrome bd ubiquinol oxidase, subunit I PFAM: cytochrome bd ubiquinol oxidase, subunit I KEGG: csa:Csal_2001 cytochrome bd ubiquinol oxidase, subunit I	Cytochrome bd ubiquinol oxidase, subunit I	probable cyanide insensitive terminal oxidase,subunit I Probable cyanide insensitive terminal oxidase,subunit I Homology to cioA of P. aeruginose of 44% (TREMBL:O07440) InterPro: Cytochrome bd ubiquinol oxidase subunit I (IPR002585) Pfam: Bacterial cytochrome ubiquinol oxidase no signal peptide no TMHs High confidence in function and specificity	Cytochrome bd ubiquinol oxidase, subunit I	cytochrome d ubiquinol oxidase subunit I	Putative cytochrome oxidase subunit	Cytochrome D ubiquinol oxidase subunit	cytochrome bd ubiquinol oxidase, subunit I PFAM: cytochrome bd ubiquinol oxidase, subunit I KEGG: ppu:PP4651 ubiquinol oxidase subunit I, cyanide insensitive	ubiquinol oxidase subunit I, cyanide insensitive Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 9179851; Product type e : enzyme	Cytochrome bd ubiquinol oxidase, subunit I	
CHLTR00015	Cytochrome Oxidase Subunit II	Putative transmembrane cytochrome bd-II oxidase (Subunit II) oxidoreductase protein	Similar to quinol oxidase subunit II	identified by similarity to GP:4514629 cytochrome d ubiquinol oxidase, subunit II	Cytochrome d ubiquinol oxidase subunit II-like protein	cytochrome d ubiquinol oxidase subunit II CydB	cytochrome BD2 subunit II	similar to Salmonella typhi CT18 probable terminal oxidase subunit II probable terminal oxidase subunit II	Similar to Chlorobium tepidum cytochrome D ubiquinol oxidase, subunit II CydB or CT1819 SWALL:Q8KBG8 (EMBL:AE012934) (340 aa) fasta scores: E(): 5.3e-27, 31.08% id in 341 aa, and to Xanthomonas axonopodis cyanide insensitive terminal oxidase CioB or XAC3736 SWALL:Q8PG81 (EMBL:AE012023) (340 aa) fasta scores: E(): 4.8e-26, 32.75% id in 345 aa putative cytochrome D ubiquinol oxidase, subunit II	cytochrome D ubiquinol oxidase subunit II homolog	Ortholog of S. aureus MRSA252 (BX571856) SAR1060 putative membrane protein	cytochrome D ubiquinol oxidase subunit II homolog	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme ubiquinol oxidase subunit II, cyanide insensitive	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 cytochrome d ubiquinol oxidase subunit II CydB or Cyd-2 or B0734 or C0812 or z0901 or ECS0769 SWALL:CYDB_ECOLI (SWALL:P11027) (379 aa) fasta scores: E(): 8.1e-22, 26.41% id in 390 aa, and to Bacteroides thetaiotaomicron cytochrome d ubiquinol oxidase subunit II BT1209 SWALL:AAO76316 (EMBL:AE016930) (380 aa) fasta scores: E(): 4e-138, 90.23% id in 379 aa, and to Campylobacter jejuni cytochrome bd oxidase subunit II CydB or CJ0082 SWALL:Q9PJ42 (EMBL:AL139074) (374 aa) fasta scores: E(): 4.6e-50, 50.79% id in 376 aa putative cytochrome d ubiquinol oxidase subunit II	Ubiquinol oxidase subunit II, cyanide insensitive	Cytochrome bd-type quinol oxidase, subunit 2	Cytochrome BD2 subunit II	Cyanide insensitive terminal oxidase	cytochrome D ubiquinol oxidase subunit II	identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203 cytochrome d ubiquinol oxidase, subunit II	identified by similarity to GB:CAA71556.1; match to protein family HMM PF02322; match to protein family HMM TIGR00203 cytochrome d ubiquinol oxidase, subunit II	Cytochrome bd ubiquinol oxidase, subunit II	Similar to Pseudomonas aeruginosa cyanide insensitive terminal oxidase CioB TR:O07441 (EMBL:Y10528) (335 aa) fasta scores: E(): 2.4e-06, 21.951% id in 328 aa, and to Bacillus halodurans cytochrome D ubiquinol oxidase subunit II BH3974 TR:Q9K5W3 (EMBL:AP001520) (338 aa) fasta scores: E(): 4.3e-66, 53.550% id in 338 aa putative membrane protein	identified by similarity to GP:4514629 cytochrome d ubiquinol oxidase, subunit II	similar to gi|27467703|ref|NP_764340.1| [Staphylococcus epidermidis ATCC 12228], percent identity 73 in 338 aa, BLASTP E(): e-146 cytochrome bd-type quinol oxidase subunit 2	Cytochrome d ubiquinol oxidase, subunit II	cytochrome D ubiquinol oxidase, subunit II	cytochrome d ubiquinol oxidase subunit II	cytochrome d ubiquinol oxidase, subunit II	
CHLTR00016	ATPase	similar to PhoH protein hypothetical protein	conserved gene PhoH protein (phosphate starvation inducible protein)	similar to PhoH protein hypothetical protein	Probable PhoH-related protein	PhoH2	PROBABLE PHOH-LIKE PROTEIN PHOH2	Mb1125, phoH2, len: 433 aa. Equivalent to Rv1095, len: 433 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 433 aa overlap). Probable phoH2, phoH-like protein (phosphate starvation-induced protein), probably ATP-binding protein. Equivalent to AL049491 MLCB1222_14 Mycobacterium leprae (433 aa) (92.8% identity in 432 aa overlap). Similar to many proteins described as PhoH-like e.g. Z97025|BSZ97025_12 Bacillus subtilis (442 aa), FASTA scores: opt: 605, E(): 0, (40.1% identity in 444 aa overlap); or Mycobacterium tuberculosis Rv2368c|O05830|PHOL_MYCTU Mycobacterium tuberculosis (352 aa), FASTA scores: opt: 390, E(): 4e-19, (31.5% identity in 241 aa overlap). Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE PHOH FAMILY. PROBABLE PHOH-LIKE PROTEIN PHOH2 (PHOSPHATE STARVATION-INDUCIBLE PROTEIN PSIH)	Nucleotide binding protein	phosphate starvation-induced protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	Similar to Synechococcus sp. PhoH SEA0005 SWALL:Q935Z1 (EMBL:U30252) (442 aa) fasta scores: E(): 7.5e-52, 45.67% id in 451 aa, and to Bacillus cereus phosphate starvation-inducible protein PhoH protein BC3951 SWALL:Q819M5 (EMBL:AE017011) (442 aa) fasta scores: E(): 1.4e-49, 43.55% id in 450 aa putative phosphate starvation-inducible protein	Putative uncharacterized protein	PhoH family protein	Similar to Synechococcus sp. PhoH SEA0005 SWALL:Q935Z1 (EMBL:U30252) (442 aa) fasta scores: E(): 4.3e-53, 42.82% id in 453 aa, and to Bacillus halodurans hypothetical protein BH2629 SWALL:Q9K9L6 (EMBL:AP001516) (442 aa) fasta scores: E(): 2.1e-51, 40.74% id in 454 aa conserved hypothetical PhoH-like protein	PhoH family protein	Predicted PhoH-related ATPase	putative PhoH-related protein	conserved hypothetical protein	identified by match to protein family HMM PF02562 PhoH family protein	PhoH family protein	putative phosphate starvation-inducible protein PhoH	identified by match to protein family HMM PF02562 PhoH-like protein	identified by match to protein family HMM PF02562 PhoH-like protein	PhoH-like protein	PhoH-like protein	PhoH-like protein	Nucleotide binding protein, PINc	PhoH-like protein	
CHLTR00017	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00018	Putative uncharacterized protein	cell wall-associated hydrolases	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00019	Putative uncharacterized protein	Putative membrane protein	Putative membrane protein	


CHLTR00020	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Mb1563, ileS, len: 1041 aa. Equivalent to Rv1536, len: 1041 aa, from Mycobacterium tuberculosis strain H37Rv, (99.9% identity in 1041 aa overlap). ileS, Isoleucyl-tRNA synthetase (EC 6.1.1.5) , similar to several e.g. SYIC_YEAST P09436 isoleucyl-tRNA synthetase (1072 aa), FASTA scores: opt: 1447, E(): 0, (37.8% identity in 1072 aa overlap); contains PS00178 Aminoacyl-transfer RNA synthetases class-I signature.  BELONGS TO CLASS-I AMINOACYL-TRNA SYNTHETASE FAMILY. isoleucyl-tRNA synthetase ileS	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Similar to Borrelia burgdorferi isoleucyl-tRNA synthetase IleS or BB0833 SWALL:SYI_BORBU (SWALL:O51773) (1042 aa) fasta scores: E(): 2.1e-194, 45.33% id in 1008 aa, and to Staphylococcus aureus isoleucyl-tRNA synthetase, mupirocin resistant MupR SWALL:SYIP_STAAU (SWALL:P41368) (1024 aa) fasta scores: E(): 1.5e-138, 37.83% id in 999 aa isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Similar to sp|Q9ZCU4|SYI_RICPR sp|Q10765|SYI_MYCTU sp|Q9X7E5|SYI_MYCLE sp|O51773|SYI_BORBU; Ortholog to ERGA_CDS_05000 Isoleucyl-tRNA synthetase	isoleucine-tRNA synthetase	COG0060 IleS isoleucyl-tRNA synthetase; go_process: 0006418 isoleucine-tRNA ligase	, predicted protein, len = 1099 aa, isoleucine tRNA synthetase; predicted pI = 7.0894; high similarity to Q9BMG3, isoleucine tRNA synthetase (EC 6.1.1.5) (1087 aa, Leishmania donovani, EMBL: AF326935, AAG49529); Fasta scores: E():0 isoleucyl-tRNA synthetase, putative	Similar to Methanobacterium thermoautotrophicum isoleucyl-tRNA synthetase IleS SWALL:SYI_METTM (SWALL:P26499) (1044 aa) fasta scores: E(): 1.8e-56, 32.12% id in 1133 aa, and to Bacteroides thetaiotaomicron isoleucyl-tRNA synthetase BT0806 SWALL:AAO75913 (EMBL:AE016929) (1162 aa) fasta scores: E(): 0, 88.47% id in 1163 aa isoleucyl-tRNA synthetase	Similar to Mycobacterium tuberculosis isoleucyl-tRNA synthetase IleS or Rv1536 or mt1587 or mtcy48.29C SWALL:SYI_MYCTU (SWALL:Q10765) (1041 aa) fasta scores: E(): 0, 52.58% id in 1046 aa, and to Methanosarcina barkeri isoleucyl-tRNA synthetase IleS SWALL:Q9P9L9 (EMBL:AF208389) (1058 aa) fasta scores: E(): 3.3e-65, 30.23% id in 1065 aa class I tRNA synthetase (I, L, M and V)	go_component: cytosol [goid 0005829]; go_function: isoleucine-tRNA ligase activity [goid 0004822]; go_process: protein biosynthesis [goid 0006412] isoleucyl-tRNA synthetase ,cytoplasmic	isoleucine--tRNA ligase (isoleucyl-tRNA synthetase)	Isoleucyl-tRNA synthetase	similar to Isoleucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.5) (Isoleucine--tRNAligase) (IleRS) (IRS).  (Swiss-Prot:P41252) (Homo sapiens;); go_function: isoleucine-tRNA ligase activity [goid 0004822]; go_function: ATP binding [goid 0005524]; go_process: isoleucyl-tRNA aminoacylation [goid 0006428] isoleucyl-tRNA synthetase, putative	Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine-- tRNA ligase) (IleRS).	Similar to sp|Q9ZCU4|SYI_RICPR sp|Q10765|SYI_MYCTU sp|Q9X7E5|SYI_MYCLE sp|O51773|SYI_BORBU; Ortholog to ERWE_CDS_05090 Isoleucyl-tRNA synthetase	identified by similarity to SP:P56690; match to protein family HMM TIGR00392 isoleucyl-tRNA synthetase	isoleucyl-tRNA synthetase, class Ia	Isoleucyl-tRNA synthetase	isoleucine--tRNA ligase (EC 6.1.1.5)	isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase, class Ia	isoleucyl-tRNA synthetase	
CHLTR00021	Signal Peptidase I	signal peptidase I	signal peptidase I	Signal peptidase I	Signal peptidase I	Signal peptidase I	
CHLTR00022	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00023	50S ribosomal protein L31 type B	50S ribosomal protein L31 type B	50S ribosomal protein L31 type B	50S ribosomal protein L31 type B	50S ribosomal protein L31 type B	identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105 ribosomal protein L31	LSU ribosomal protein L31P	50S ribosomal protein L31	50S ribosomal protein L31 type B	50S ribosomal protein L31 type B	50S ribosomal protein L31 type B	similar to ribosomal protein L31; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) Ribosomal protein L31	50S ribosomal protein L31	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 50S ribosomal protein L31	COG0254 Ribosomal protein L31 ribosomal protein	50S ribosomal protein L31 type B	IPR002150: Ribosomal protein L31 putative 50S ribosomal protein L31 (second copy)	putative 50S ribosomal protein L31	Similar to Bacillus subtilis 50S ribosomal protein L31 type B RpmE2 or BSU30700 SWALL:R31B_BACSU (SWALL:O34967) (82 aa) fasta scores: E(): 3.1e-08, 44.3% id in 79 aa, and to Streptococcus agalactiae 50S ribosomal protein L31 type B RpmE2 or GBS0581 or SAG0536 SWALL:R31B_STRA3 (SWALL:Q8E6I2) (86 aa) fasta scores: E(): 4.3e-13, 50.57% id in 87 aa 50S ribosomal protein L31 type B	50S ribosomal protein L31 type B	50S ribosomal protein L31 type B	ribosomal protein L31	identified by match to PFAM protein family HMM PF01197 ribosomal protein L31	50S ribosomal protein L31 type B	Putative additional 50S ribosomal protein L31	Ortholog of S. aureus MRSA252 (BX571856) SAR2208 putative 50S ribosomal protein L31	50S ribosomal protein L31 type B	ribosomal protein L31	50S ribosomal protein L31 type B	
CHLTR00024	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	peptide chain release factor 1 (RF-1), peptide termination factor	Peptide chain release factor 1	Peptide chain release factor 1	peptide chain release factor 1	conserved gene peptide chain release factor 1 (RF-1)	peptide chain release factor 1	Peptide chain release factor 1	identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00019 peptide chain release factor 1	Peptide chain release factor 1	RF-1 Bacterial Peptide Chain Release Factor 1	peptide chain release factor RF-1	identified by similarity to SP:P07011; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00019 peptide chain release factor 1	Peptide chain release factor 1	peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	identified by similarity to SP:P07011; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00019 peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Mb1331, prfA, len: 357 aa. Equivalent to Rv1299, len: 357 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 357 aa overlap). Probable prfA, peptide chain release factor 1 (rf-1), highly similar to many e.g.  RF1_MYCLE|P45833 peptide chain release factor 1 (rf-1) from Mycobacterium leprae (357 aa), FASTA scores: opt: 2047, E(): 0, (89.3% identity in 356 aa overlap); also similar to Mycobacterium tuberculosis Rv3105c, prfB peptide chain release factor 2. Contains PS00745 Prokaryotic-type class I peptide chain release factors signature. BELONGS TO THE PROKARYOTIC AND MITOCHONDRIAL RELEASE FACTORS FAMILY. PROBABLE PEPTIDE CHAIN RELEASE FACTOR 1 PRFA (RF-1)	InterProMatches:IPR004373; Cellular Component: cytoplasm (GO:0005737), Biological Process: translational termination (GO:0006415), Molecular Function: translation release factor activity, codon specific (GO:0016149) peptide chain release factor 1	
CHLTR00025	N6-adenine-specific DNA methylase	Similar to protoporphyrinogen oxidase	Probable methylase of polypeptide chain release factors protein	Similar to hypothetical adenine-specific methylase YfcB of Escherichia coli	Protoporphyrinogen oxidase	identified by match to protein family HMM TIGR00536 modification methylase, HemK family	Peptide release factor-glutamine N5-methyltransferase	identified by match to protein family HMM TIGR00536 modification methylase, HemK family	protoporphyrinogen oxidase	Protein hemK homolog	Protoporphyrinogen oxidase	Protoporphyrinogen oxidase	Methylase of polypeptide chain release factor	Protoporphyrinogen oxidase (Methyltransferase) protein	Protein hemK homolog	Mb1332, hemK, len: 325 aa. Equivalent to Rv1300, len: 325 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 325 aa overlap). Probable hemK protein homolog (EC 2.1.1.-), homology suggests translation may start at aa 22, highly similar to many e.g.  HEMK_MYCLE|P45832 Mycobacterium leprae (288 aa), FASTA scores: opt: 936, E(): 0, (76.7% identity in 189 aa overlap). BELONGS TO THE HEMK FAMILY OF MODIFICATION METHYLASES. PROBABLE HEMK PROTEIN HOMOLOG HEMK	hemK protein homolog; probable protoporphyrinogen oxidase; Biological Process: protein amino acid methylation (GO:0006479), Molecular Function: protein methyltransferase activity (GO:0008276) YwkE	methylase, polypeptide chain release factor	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark protoporphyrinogen oxidase	HemK protoporphyrinogen oxidase	Protoporphyrinogen oxidase	Methylase of polypeptide chain release factor	Similar to Listeria innocua hypothetical protein LIN2686 SWALL:Q927V1 (EMBL:AL596173) (283 aa) fasta scores: E(): 3e-21, 34.89% id in 278 aa, and to Streptococcus agalactiae hypothetical protein GBS1108 SWALL:Q8E5C4 (EMBL:AL766848) (276 aa) fasta scores: E(): 4e-17, 31.56% id in 282 aa conserved hypothetical protein	similar to BR1868, hemK protein HemK	Putative uncharacterized protein gbs1108	Protoporphyrinogen oxidase	Protoporphyrinogen oxidase protein	hypothetical protein, similar to protoporphyrinogen oxidase	PROTOPORPHYRINOGEN OXIDASE	
CHLTR00026	Signal Recognition Particle GTPase	Signal recognition particle GTPase ffh protein	Signal recognition particle homolog	Ffh protein	Ffh	signal recognition particle protein	Probable gtp-binding signal recognition particle srp54, g-domain protein	Signal recognition particle protein	similar to signal recognition particle protein Ffh hypothetical protein	conserved gene signal recognition particle protein Ffh	similar to signal recognition particle protein Ffh hypothetical protein	Signal recognition particle protein Ffh	identified by similarity to EGAD:5600; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 signal recognition particle protein	Signal recognition particle	SRP54 signal recognition particle subunit FFH	signal recognition particle receptor	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 signal recognition particle protein	Signal recognition particle protein	signal recognition particle	Signal recognition particle protein	Ffh protein	Signal recognition particle M54 protein	Signal recognition particle GTPase	identified by similarity to SP:P37105; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 signal recognition particle protein	Ffh	Signal recognition particle GTP-binding protein	Signal recognition particle protein	Mb2940c, ffh, len: 525 aa. Equivalent to Rv2916c, len: 525 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 525 aa overlap). Probable ffh, signal recognition particle protein (ala-, gly-, leu-rich protein), equivalent to O33013|SR54_MYCLE SIGNAL RECOGNITION PARTICLE from Mycobacterium leprae (521 aa), FASTA scores: opt: 2968, E(): 1.6e-145, (87.85% identity in 526 aa overlap). Also highly similar to others e.g.  O69874|FFH from Streptomyces coelicolor (550 aa), FASTA scores: opt: 2025, E(): 6e-97, (63.8% identity in 519 aa overlap) (N-terminus longer 34 aa); P37105|SR54_BACSU from Bacillus subtilis (446 aa), FASTA scores: opt: 1451, E(): 1.9e-67, (51.5% identity in 435 aa overlap); BAB57399|FFH from Staphylococcus aureus subsp. aureus Mu50 (455 aa), FASTA scores: opt: 1418, E(): 9.4e-66, (48.65% identity in 448 aa overlap); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE SRP FAMILY OF GTP-BINDING PROTEINS. NOTE THAT SIGNAL RECOGNITION PARTICLE CONSISTS OF A SMALL CYTOPLASMIC RNA (SC-RNA) MOLECULE AND PROTEIN FFH. THE PROTEIN HAS A TWO DOMAIN STRUCTURE: THE G-DOMAIN BINDS GTP; THE M-DOMAIN BINDS THE RNA AND ALSO BINDS THE SIGNAL SEQUENCE. PROBABLE SIGNAL RECOGNITION PARTICLE PROTEIN FFH (FIFTY-FOUR HOMOLOG)	InterProMatches:IPR004780; presecretory protein translocation,Molecular Function: RNA binding (GO:0003723), Cellular Component: signal recognition particle (GO:0005786), Biological Process: SRP-dependent cotranslational membrane targeting (GO:0006614), Molecular Function: signal-recognition-particle GTPase activity signal recognition particle-like (SRP) component	
CHLTR00027	30S ribosomal protein S16	30S ribosomal protein S16	30s ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	Highly similar to 30S ribosomal protein S16 hypothetical protein	conserved gene 30S ribosomal protein S16	Highly similar to 30S ribosomal protein S16 hypothetical protein	SSU ribosomal protein S16P	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	identified by similarity to SP:P02372; match to protein family HMM PF00886; match to protein family HMM TIGR00002 ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	IPR000307: Ribosomal protein S16 30S ribosomal subunit protein S16	Ribosomal protein S16	similar to Salmonella typhi CT18 30S ribosomal subunit protein S16 30S ribosomal subunit protein S16	Similar to Chlamydophila caviae 30s ribosomal protein s16 rpsp or cca00657 SWALL:RS16_CHLCV (SWALL:Q822M5) (119 aa) fasta scores: E(): 1.7e-40, 91.37% id in 116 aa 30s ribosomal protein s16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	identified by match to PFAM protein family HMM PF00886 ribosomal protein S16	Putative 30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	
CHLTR00028	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-n1)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	Highly similar to tRNA (guanine-N1)-methyltransferase hypothetical protein	tRNA (guanine-N(1)-)-methyltransferase	identified by match to protein family HMM PF01746; match to protein family HMM TIGR00088 tRNA (guanine-N1)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (Guanine-N(1)-)-methyltransferase	tRNA (guanine-N1)-methyltransferase	identified by match to protein family HMM PF01746; match to protein family HMM TIGR00088 tRNA (guanine-N1)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N1)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (Guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	identified by match to protein family HMM PF01746; match to protein family HMM TIGR00088 tRNA (guanine-N1)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	Mb2930c, trmD, len: 230 aa. Equivalent to Rv2906c, len: 230 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 230 aa overlap). Probable trmD, tRNA m1G methyltransferase (EC 2.1.1.31), equivalent to O33017|TRMD_MYCLE from Mycobacterium leprae (238 aa), FASTA scores: opt: 1363, E(): 8.1e-86, (87.2% identity in 227 aa overlap). Also highly similar to others e.g.  O69882|TRMD_STRCO from Streptomyces coelicolor and S.  lividans (277 aa), FASTA scores: opt: 841, E(): 4.5e-50, (55.55% identity in 234 aa overlap); Q9A0B6 from Streptococcus pyogenes (243 aa), FASTA scores: opt: 698, E(): 2.5e-40, (47.6% identity in 227 aa overlap); P07020|TRMD_ECOLI|TRMD|B2607|Z3901|ECS3470 from Escherichia coli strain O157:H7 (255 aa), FASTA scores: opt: 573, E(): 3.8e-33, (42.1% identity in 228 aa overlap); etc. BELONGS TO THE RNA METHYLTRANSFERASE TRMD FAMILY. PROBABLE TRNA (GUANINE-N1)-METHYLTRANSFERASE TRMD (M1G-METHYLTRANSFERASE) (TRNA [GM37] METHYLTRANSFERASE)	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark tRNA (guanine-N1-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	
CHLTR00029	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50s ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	conserved gene 50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	identified by match to protein family HMM PF01245; match to protein family HMM TIGR01024 ribosomal protein L19	50S ribosomal protein L19	LSU ribosomal protein L19P	50S ribosomal protein L19	identified by similarity to SP:P30529; match to protein family HMM PF01245; match to protein family HMM TIGR01024 ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	identified by similarity to SP:P30529; match to protein family HMM PF01245; match to protein family HMM TIGR01024 ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	Mb2928c, rplS, len: 113 aa. Equivalent to Rv2904c, len: 113 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 113 aa overlap). Probable rplS, 50S ribosomal protein L19, equivalent to O33020|RL19_MYCLE 50S RIBOSOMAL PROTEIN L19 from Mycobacterium leprae (113 aa), FASTA scores: opt: 702, E(): 1.4e-45, (93.8% identity in 113 aa overlap). Also highly similar to others e.g.  O69883|RL19_STRCO from Streptomyces coelicolor (116 aa), FASTA scores: opt: 571, E(): 9.5e-36, (77.25% identity in 110 aa overlap); O31742|RL19_BACSU from Bacillus subtilis (115 aa), FASTA scores: opt: 523, E(): 3.8e-32, (72.9% identity in 107 aa overlap); RL19_BACST|P30529 from Bacillus stearothermophilus (116 aa), FASTA scores: opt: 518, E(): 9.1e-32, (71.7% identity in 106 aa overlap); etc. BELONGS TO THE L19P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 50S RIBOSOMAL PROTEIN L19 RPLS	InterProMatches:IPR001857; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein L19	
CHLTR00030	Ribonuclease HII	Ribonuclease HII	ribonuclease HII	Ribonuclease HII	Ribonuclease HII	Ribonuclease HII	Similar to ribonuclease HII hypothetical protein	conserved gene ribonuclease HII	Similar to ribonuclease HII hypothetical protein	Ribonuclease HII	identified by similarity to EGAD:108435; match to protein family HMM PF01351 ribonuclease HII	Ribonuclease HII	ribonuclease HII	identified by similarity to SP:P10442; match to protein family HMM PF01351 ribonuclease HII	Ribonuclease HII	ribonuclease HII	Ribonuclease HII	Ribonuclease HII	Ribonuclease HII	Ribonuclease HII	identified by match to protein family HMM PF01351 ribonuclease HII	Ribonuclease HII	Ribonuclease	Ribonuclease HII	Mb2926c, rnhB, len: 264 aa. Equivalent to Rv2902c, len: 264 aa, from Mycobacterium tuberculosis strain H37Rv, (99.6% identity in 264 aa overlap). Probable rnhB, ribonuclease HII (EC 3.1.26.4), equivalent to O33022|RNH2_MYCLE|RNHB|ML1611|MLCB250.40 RIBONUCLEASE HII from Mycobacterium leprae (240 aa), FASTA scores: opt: 1242, E(): 6.9e-72, (76.75% identity in 245 aa overlap).  Also similar (but longer ~20 aa) to others e.g.  Q9HXY9|RNHB|PA3642 RIBONUCLEASE HII from Pseudomonas aeruginosa (201 aa), FASTA scores: opt: 572, E(): 3.1e-29, (52.7% identity in 184 aa overlap); Q9PEI7|RNH2_XYLFA|RNHB|XF1041 RIBONUCLEASE HII from Xylella fastidiosa (234 aa), FASTA scores: opt: 556, E(): 3.6e-28, (50.25% identity in 185 aa overlap); P10442|RNH2_ECOLI|RNHB|B0183 RIBONUCLEASE HII from Escherichia coli strain K-12 (213 aa), FASTA scores: opt: 519, E(): 7.4e-26, (48.65% identity in 183 aa overlap); etc. BELONGS TO THE RNASE HII FAMILY. COFACTOR: MANGANESE (BY SIMILARITY). PROBABLE RIBONUCLEASE HII PROTEIN RNHB (RNASE HII)	InterProMatches:IPR001352; Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease H activity (GO:0004523) ribonuclease HII	ribonuclease HII	Ribonuclease HII	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ribonuclease HII	
CHLTR00031	Guanylate kinase	Guanylate kinase	Guanylate kinase	Guanylate kinase	Guanylate kinase	guanylate kinase	Guanylate kinase	Guanylate kinase	guanylate kinase	conserved gene guanylate kinase	guanylate kinase	identified by match to protein family HMM PF00625 guanylate kinase	Guanylate kinase	Guanylate kinase	guanylate kinase	identified by similarity to SP:P24234; match to protein family HMM PF00625 guanylate kinase	Guanylate kinase	guanylate kinase	Guanylate kinase	Guanylate kinase	Guanylate kinase	identified by match to protein family HMM PF00625 guanylate kinase, putative	Guanylate kinase	Guanylate kinase (GMP kinase) protein	Guanylate kinase	Mb1424, gmk, len: 208 aa. Equivalent to Rv1389, len: 208 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 208 aa overlap). Probable gmk, guanylate kinase (EC 2.7.4.8), similar to e.g. KGUA_ECOLI|P24234 guanylate kinase from Escherichia coli (207 aa), FASTA scores: opt: 424, E(): 6.6e-20, (35.9% identity in 184 aa overlap). Contains PS00017 ATP/GTP-binding site motif A (P-loop), PS00856 Guanylate kinase signature. BELONGS TO THE GUANYLATE KINASE FAMILY. PROBABLE GUANYLATE KINASE GMK	InterProMatches:IPR008144 guanylate kinase	guanylate kinase	Guanylate kinase	
CHLTR00032	Uncharacterized protein CT_031	hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00033	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	methionyl-tRNA synthetase	conserved gene methionyl tRNA synthetase	methionyl-tRNA synthetase	identified by match to protein family HMM PF00133; match to protein family HMM TIGR00398 methionyl-tRNA synthetase	Methionyl-tRNA synthetase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark methionyl-tRNA synthetase	IPR001412: Aminoacyl-tRNA synthetase, class I; IPR002304: Methionyl-tRNA synthetase, class Ia; IPR002547: t-RNA-binding region methionine tRNA synthetase	Similar to Escherichia coli methionyl-tRNA synthetase MetG or B2114 SWALL:SYM_ECOLI (SWALL:P00959) (676 aa) fasta scores: E(): 2e-52, 33.66% id in 502 aa, and to Thermoplasma volcanium methionyl-tRNA synthetase MetG or TV1244 or TVG1284612 SWALL:SYM_THEVO (SWALL:Q979B7) (543 aa) fasta scores: E(): 3.3e-74, 39.8% id in 520 aa methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	methionyl-tRNA synthetase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme methionyl-tRNA synthetase	Methionyl-tRNA synthetase	methionine--tRNA ligase; MetRS; Similar to: HI1276, SYM_HAEIN methionyl-tRNA synthetase	Similar to Escherichia coli methionyl-tRNA synthetase MetG or B2114 SWALL:SYM_ECOLI (SWALL:P00959) (676 aa) fasta scores: E(): 2.1e-74, 35.12% id in 689 aa, and to Bacteroides thetaiotaomicron methionyl-tRNA synthetase BT2933 SWALL:AAO78039 (EMBL:AE016938) (679 aa) fasta scores: E(): 0, 94.55% id in 679 aa, and to Methanopyrus kandleri methionyl-tRNA synthetase MetG or mk0850 SWALL:SYM_METKA (SWALL:Q8TX28) (668 aa) fasta scores: E(): 1.6e-100, 39.97% id in 683 aa putative methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Similar to Q8EDX2 Methionyl-tRNA synthetase from Shewanella oneidensis (676 aa). FASTA: opt: 2781 Z-score: 3210.7 E(): 6e-171 Smith-Waterman score: 2781; 58.136 identity in 676 aa overlap. Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	go_component: cytoplasm [goid 0005737]; go_function: methionine-tRNA ligase activity [goid 0004825]; go_process: tRNA aminoacylation for protein translation [goid 0006418] methionyl-tRNA synthetase	
CHLTR00034	Exodeoxyribonuclease V, Alpha	Exodeoxyribonuclease V, alpha chain	identified by match to protein family HMM TIGR01448 helicase, putative, RecD/TraA family	Exodeoxyribonuclease V alpha chain	exodeoxyribonuclease V	Deoxyribonuclease	Helicase RecD/TraA putative exodeoxyribonuclease V alpha subunit YrrC	exonuclease V alpha subunit ATP-dependent exoDNAse alpha subunit	exodeoxyribonuclease V alpha chain	Exodeoxyribonuclease V alpha chain	Similar to Chlorobium tepidum exodeoxyribonuclease V, alpha subunit, putative CT1402 SWALL:Q8KCL3 (EMBL:AE012898) (734 aa) fasta scores: E(): 1.4e-94, 38.62% id in 725 aa, and to Clostridium tetani exodeoxyribonuclease V alpha chain CTC00322 SWALL:Q898W6 (EMBL:AE015937) (743 aa) fasta scores: E(): 1.7e-76, 38.15% id in 747 aa putative exodeoxyribonuclease	Putative uncharacterized protein gbs1769	hypothetical protein, similar to deoxyribonuclease	identified by match to TIGR protein family HMM TIGR01448 helicase, putative	Ortholog of S. aureus MRSA252 (BX571856) SAR1698 conserved hypothetical protein	hypothetical protein, similar to deoxyribonuclease	Exodeoxyribonuclease V alpha chain	best blastp match gb|AAK34564.1| (AE006610) putative exodeoxyribonuclease V (alpha subunit) [Streptococcus pyogenes M1 GAS] putative exodeoxyribonuclease V (alpha subunit)	identified by match to protein family HMM TIGR01448 helicase, putative, RecD/TraA family	Exonuclease V	exodeoxyribonuclease V	identified by similarity to GP:28809634 putative helicase	hypothetical protein, similar to exodeoxyribonuclease V	Similar to Bacillus subtilis hypothetical protein YrrC TR:O34481 (EMBL:Z99117) (798 aa) fasta scores: E(): 1.9e-137, 52.646% id in 756 aa, and to Streptococcus pyogenes putative exodeoxyribonuclease V SPY1844 TR:Q99Y68 (EMBL:AE006610) (817 aa) fasta scores: E(): 2.2e-105, 39.753% id in 810 aa conserved hypothetical protein	helicase RecD/TraA	identified by match to protein family HMM TIGR01448 helicase, RecD/TraA family	exodeoxyribonuclease V alpha chain	identified by match to protein family HMM TIGR01448 helicase, putative, RecD/TraA family	similar to gi|57284687|gb|AAW36781.1| [Staphylococcus aureus subsp. aureus COL], percent identity 77 in 824 aa, BLASTP E(): 0.0 ATP-dependent exonuclease V alpha subunit	
CHLTR00035	Cationic Amino Acid Transporter	Permease of the drug/metabolite transporter (DMT) superfamily	putative cationic amino acid transporter	similar to Salmonella typhi CT18 putative membrane protein putative membrane protein	Similar to Shigella flexneri putative transmembrane subunit YtfF or SF4276 SWALL:Q83IK9 (EMBL:AE015435) (324 aa) fasta scores: E(): 1.3e-21, 27.45% id in 306 aa, and to Escherichia coli hypothetical protein YtfF or B4210 SWALL:YTFF_ECOLI (SWALL:P39314) (324 aa) fasta scores: E(): 5.4e-21, 27.12% id in 306 aa putative inner membrane protein	Integral membrane protein	COG0697 conserved hypothetical protein	Putative cationic amino acid transporter	integral membrane protein	ortholog to Escherichia coli bnum: b4210; MultiFun: Transport 4, 4.S.12 putative cationic amino acid transport protein	identified by match to protein family HMM PF00892 membrane protein, putative	identified by match to protein family HMM PF00892 membrane protein, putative	probable transmembrane protein	Protein of unknown function DUF6	Code: GER; COG: COG0697 putative transmembrane subunit	Code: GER; COG: COG0697 putative transmembrane subunit	conserved hypothetical protein	hypothetical protein	Code: GER; COG: COG0697 putative transmembrane subunit	putative transmembrane protein similarity:fasta; SWALL:Q8XZG7 (EMBL:AL646064); Ralstonia solanacearum; probable transmembrane protein; rs05264; length 313 aa; 320 aa overlap; query 7-309 aa; subject 3-309 aa	transporter	Putative uncharacterized protein	putative membrane protein	integral membrane protein	pseudo similar to CC0848 [Caulobacter crescentus CB15] Similar to swissprot:Q9A9W3 Putative location:bacterial inner membrane Psort-Score: 0.5140; go_component: membrane [goid 0016020]	Putative membrane protein YtfF	putative transmembrane protein	Putative uncharacterized protein ytfF	protein of unknown function DUF6, transmembrane	
CHLTR00037	Uncharacterized protein CT_036	Putative exported protein precursor	Putative exported protein precursor	
CHLTR00036	Uncharacterized protein CT_035	Biotin-protein ligase	biotin apo-protein ligase-related protein	biotin--protein ligase	Hypothetical protein	Putative uncharacterized protein	Biotin-protein ligase	Biotin-protein ligase	Putative uncharacterized protein	biotin apo-protein ligase-related protein	Putative uncharacterized protein	Putative Class I glutamine amidotransferase	Putative uncharacterized protein	Biotin apo-protein ligase	Putative N-terminal of biotin-protein ligase	jgi|Capca1|224678|estExt_fgenesh1_pg.C_4500023	Biotin-protein ligase	Putative uncharacterized protein	
CHLTR00039	Putative uncharacterized protein	conserved hypothetical protein	hypothetical membrane associated protein	Putative membrane protein	Putative membrane protein	Putative membrane protein	
CHLTR00040	Deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	deoxycytidine triphosphate deaminase	conserved gene deoxycytidine triphosphate deaminase	deoxycytidine triphosphate deaminase	dCTP deaminase	Deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	Deoxycytidine deaminase	identified by match to protein family HMM PF00692 deoxycytidine triphosphate deaminase, putative	Deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	Mb0329, dcd, len: 190 aa. Equivalent to Rv0321, len: 190 aa, from Mycobacterium tuberculosis strain H37Rv, (99.5% identity in 190 aa overlap). Probable dcd (alterrnate gene names: dus or paxA), deoxycytidine triphosphate deaminase (EC 3.5.4.13), equivalent to CAC32024.1|AL583925 probable deoxycytidine triphosphate deaminase from Mycobacterium leprae (190 aa). Also highly similar to others e.g.  Q9X8W0|DCD_STRCO|7480599|T36613|SCH35.46 DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE from Streptomyces coelicolor (191 aa); DCD_ECOLI|P28248|DUS|PAXA|B2065 DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE from Escherichia coli strain K12 (193 aa), FASTA scores: opt: 408, E(): 2.7e-21, (43.1% identity in 188 aa overlap); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE DCTP DEAMINASE FAMILY. PROBABLE DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE DCD (DCTP DEAMINASE)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	Deoxycytidine deaminase	Similar to Neisseria meningitidis deoxycytidine triphosphate deaminase Dcd or Nma1060 or nmb0849 SWALL:DCD_NEIMA (SWALL:Q9JRE8) (188 aa) fasta scores: E(): 5.1e-54, 68.08% id in 188 aa, and to Pseudomonas aeruginosa deoxycytidine triphosphate deaminase Dcd or Pa3480 SWALL:DCD_PSEAE (SWALL:Q9HYC9) (188 aa) fasta scores: E(): 3.2e-53, 68.08% id in 188 aa deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	Hypothetical protein	dCTP Deaminase	Similar to sp|Q92JG8|DCD_RICCN sp|Q9ZE77|DCD_RICPR; Ortholog to ERGA_CDS_07260 Deoxycytidine triphosphate deaminase	deoxycytidine triphosphate deaminase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme deoxycytidine triphosphate deaminase	COG0717 Dcd deoxycytidine deaminase similar to EAA25831.1 deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	COG0717 deoxycytidine deaminase	
CHLTR00042	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction ATP-dependent DNA helicase ruvB	RuvB	holliday junction DNA helicase	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction ATP-dependent DNA helicase ruvB	Highly similar to Holliday junction DNA helicase RuvB hypothetical protein	conserved gene Holliday junction DNA helicase RuvB	Highly similar to Holliday junction DNA helicase RuvB hypothetical protein	Holliday junction ATP-dependent DNA helicase ruvB	identified by similarity to SP:O32055; match to protein family HMM PF00004; match to protein family HMM PF05491; match to protein family HMM PF05496; match to protein family HMM TIGR00635 Holliday junction DNA helicase RuvB	Holliday junction ATP-dependent DNA helicase ruvB	RuvB Holliday junction DNA helicase	holliday junction DNA helicase RuvB	identified by match to protein family HMM PF00004; match to protein family HMM PF05491; match to protein family HMM PF05496; match to protein family HMM TIGR00635 Holliday junction DNA helicase RuvB	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction DNA helicase, subunit B	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction DNA helicase ruvB	Holliday junction DNA helicase RuvB	Holliday junction ATP-dependent DNA helicase ruvB	identified by similarity to SP:Q51426; match to protein family HMM PF00004; match to protein family HMM PF05491; match to protein family HMM PF05496; match to protein family HMM TIGR00635 Holliday junction DNA helicase RuvB	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction DNA helicase RuvB	Holliday junction ATP-dependent DNA helicase ruvB	Mb2623c, ruvB, len: 344 aa. Equivalent to Rv2592c, len: 344 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 344 aa overlap). Probable ruvB, Holliday junction binding protein (EC 3.6.1.-) (see first citation below), equivalent to P40833|RUVB_MYCLE|ML0483|B1177_C3_227 HOLLIDAY JUNCTION DNA HELICASE from Mycobacterium leprae (349 aa), FASTA scores: opt: 2059, E(): 2.1e-106, (94.45% identity in 342 aa overlap). Also highly similar to others e.g.  Q9AE09|RUVB from Corynebacterium glutamicum (Brevibacterium flavum) (363 aa), FASTA scores: opt: 1651, E(): 6.5e-84, (75.6% identity in 332 aa overlap); Q9L291|RUVB from Streptomyces coelicolor (357 aa), FASTA scores: opt: 1530, E(): 3e-77, (68.2% identity in 343 aa overlap); P08577|RUVB_ECOLI|B1860|Z2912|ECS2570 from Escherichia coli strains K12 and O157:H7 (336 aa), FASTA scores: opt: 1284, E(): 1e-63, (55.45% identity in 330 aa overlap); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE RUVB FAMILY. PROBABLE HOLLIDAY JUNCTION DNA HELICASE RUVB	InterProMatches:IPR004605; Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Molecular Function: Holliday junction helicase activity (GO:0009378) Holliday junction DNA helicase	holliday junction DNA helicase RuvB	
CHLTR00043	Uncharacterized protein CT_041	conserved hypothetical protein	hypothetical protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00044	Glycogen Hydrolase	Similar to Prokaryotic and Eukaryotic proteins including: Mycobacterium tuberculosis glycogen operon protein GlgX homolog or rv1564c or mt1615 or mtcy48.01 SWALL:GLGX_MYCTU (SWALL:Q10767) (721 aa) fasta scores: E(): 8.4e-72, 40.06% id in 649 aa, Pirellula sp glycogen operon protein Glgx-2 or rb9292 SWALL:CAD76180 (EMBL:BX294149) (733 aa) fasta scores: E(): 8.7e-95, 44.75% id in 601 aa and Arabidopsis thaliana putative isoamylase at4g09020 SWALL:Q8RWW6 (EMBL:AY091058) (764 aa) fasta scores: E(): 1.4e-89, 45.66% id in 635 aa putative glycosyl hydrolase	Glycogen debranching enzyme GlgX	Pullulanase and related glycosidases GlgX protein	alpha-amylase	Glycogen debranching enzyme GlgX	glycogen hydrolase EC 3.2.1.-	Glycogen debranching enzyme GlgX	Glycogen debranching enzyme	Glycogen debranching enzyme GlgX	probable glycogen operon protein GlgX COG family: pullulanase and related glycosidases Orthologue of BL1573 PFAM_ID: alpha-amylase PFAM_ID: isoamylase_N	glycogen debranching enzyme GlgX identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100	glycogen debranching enzyme GlgX KEGG: aba:Acid345_3295 glycogen debranching enzyme GlgX TIGRFAM: glycogen debranching enzyme GlgX PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region SMART: alpha amylase, catalytic sub domain	isoamylase	predicted protein go_function: alpha-amylase activity; hydrolase activity, hydrolyzing O-glycosyl compounds; go_process: carbohydrate metabolism	Alpha amylase, catalytic region	glycogen debranching enzyme GlgX KEGG: mac:MA2000 glycogen debranching enzyme TIGRFAM: glycogen debranching enzyme GlgX PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region SMART: alpha amylase, catalytic sub domain	Glycogen debranching enzyme GlgX	Putative glycogen debranching enzyme	Glycogen debranching enzyme GlgX	Glycogen debranching enzyme GlgX	Isoamylase	Glycogen debranching enzyme GlgX	Glycogen debranching enzyme GlgX	Glycogen debranching enzyme GlgX	Glycogen debranching enzyme GlgX	glycogen debranching enzyme GlgX KEGG: mmc:Mmcs_3080 glycogen debranching enzyme GlgX TIGRFAM: glycogen debranching enzyme GlgX PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region SMART: alpha amylase, catalytic sub domain	Pullulanase, type I	Putative glycosyl hydrolase	
CHLTR00045	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	hypothetical protein	Putative type III secretion system chaperone	Putative type III secretion system chaperone	Putative type III secretion system chaperone	
CHLTR00046	Single-stranded DNA-binding protein	Similar to many proposed single-strand DNA binding proteins including: Buchnera aphidicola single-strand binding protein Ssb or bbp488 SWALL:SSB_BUCBP (SWALL:Q89A53) (166 aa) fasta scores: E(): 0.022, 26.5% id in 166 aa. Also similar to many others including: Listeria innocua hypothetical protein Lin0097 lin0097 SWALL:Q92FK7 (EMBL:AL596163) (159 aa) fasta scores: E(): 0.00031, 24.05% id in 158 aa putative single-strand DNA binding	single-strand binding protein	single-strand binding protein TIGRFAM: single-strand binding protein PFAM: single-strand binding protein/Primosomal replication protein n KEGG: tde:TDE1677 single-strand binding protein	Single-strand binding protein	single-strand DNA binding protein	single-strand binding protein Ssb cytoplasmic protein this protein is essential for replication of the chromosome. it is also involved in DNA recombination and repair.	single-strand binding protein TIGRFAM: single-strand binding protein PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding, OB-fold, tRNA/helicase-type KEGG: mmc:Mmcs_5369 single-strand binding protein	single-strand binding protein	Hypothetical protein	Single-stranded DNA-binding protein	single-strand binding protein TIGRFAM: single-strand binding protein PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding, OB-fold, tRNA/helicase-type KEGG: mmc:Mmcs_5369 single-strand binding protein	Single-stranded DNA-binding protein	Single-strand DNA binding protein	Single-strand DNA binding protein	Single-strand binding protein Ssb	Single-strand binding protein	Single-strand binding protein	Single-stranded DNA-binding protein	Single-stranded DNA-binding protein	Single-stranded DNA-binding protein	Single-stranded DNA-binding protein	Single-strand binding protein	Single-stranded DNA-binding protein	Single-stranded DNA-binding protein	Single-strand binding protein	Single-stranded DNA-binding protein	Single-stranded DNA-binding protein	
CHLTR00047	Probable cytosol aminopeptidase	Probable cytosol aminopeptidase	Similar to leucine aminopeptidase hypothetical protein	conserved gene aminopeptidase A/I	identified by match to protein family HMM PF00883 cytosol aminopeptidase	leucine aminopeptidase	identified by similarity to SP:P27888; match to protein family HMM PF00883; match to protein family HMM PF02789 cytosol aminopeptidase	Leucyl aminopeptidase	Probable cytosol aminopeptidase	identified by match to protein family HMM PF00883 cytosol aminopeptidase family protein	Leucine aminopeptidase protein	probable leucyl aminopeptidase; Molecular Function: aminopeptidase activity (GO:0004177), Cellular Component: intracellular (GO:0005622), Biological Process: proteolysis and peptidolysis (GO:0006508) Peptidase M17, cytosol aminopeptidase, C-terminal	cytosol aminopeptidase	Leucine aminopeptidase	IPR000819: Peptidase M17, cytosol aminopeptidase, C-terminal putative aminopeptidase	Leucyl aminopeptidase	Similar to Rhizobium meliloti probable cytosol aminopeptidase PepA or r01155 or smc00585 SWALL:AMPA_RHIME (SWALL:Q92QY7) (497 aa) fasta scores: E(): 1.5e-50, 36.6% id in 489 aa and to Rickettsia conorii probable cytosol aminopeptidase PepA or rc0184 SWALL:AMPA_RICCN (SWALL:Q92J85) (500 aa) fasta scores: E(): 6.8e-50, 37.52% id in 453 aa probable aminopeptidase	Probable cytosol aminopeptidase	similar to BR0689, cytosol aminopeptidase family protein cytosol aminopeptidase family protein	probable cytosol aminopeptidase	Cytosol aminopeptidase	Aminopeptidase A	Ortholog of S. aureus MRSA252 (BX571856) SAR0904 cytosol aminopeptidase family protein	probable cytosol aminopeptidase	Cytosol aminopeptidase	Similar to sp|P27888|AMPA_RICPR sp|Q984S1|AMPA_RHILO sp|Q9A7M9|AMPA_CAUCR sp|Q8UGC8|AMPA_AGRT5; Ortholog to ERGA_CDS_06600 Probable cytosol aminopeptidase (Aminopeptidase A)	Probable cytosol aminopeptidase	COG0260 leucyl aminopeptidase	
CHLTR00048	Histone-like protein HC2	Probable alginate regulatory protein	Similar to Bordetella pertussis histone H1 SWALL:Q45370 (EMBL:L37438) (182 aa) fasta scores: E(): 7e-09, 41.13% id in 141 aa and to Xanthomonas axonopodis histone h1 xac3058 SWALL:Q8PI40 (EMBL:AE011948) (155 aa) fasta scores: E(): 2e-08, 52.72% id in 110 aa histone-like protein	Histone H1	histone H1	probable histone H1 protein	hypothetical protein	eggshell protein p48	Putative uncharacterized protein	hypothetical protein	hypothetical protein identified by Glimmer2; putative	histone H1 identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	putative histone H1 protein	conserved hypothetical protein KEGG: bur:Bcep18194_A3681 hypothetical protein	membrane spanning protein, required for outer membrane integrity	histone protein	histone protein KEGG: rfr:Rfer_3349 histone protein	Histone protein	conserved hypothetical protein KEGG: bcn:Bcen_0115 hypothetical protein	Putative histone H1-like protein	hypothetical protein identified by Glimmer2; putative	histone H1-like protein HC2	Hypothetical protein	probable histone H1-like protein (alanine/lysin-rich protein)	Hypothetical protein	histone protein KEGG: rfr:Rfer_3349 histone protein	Histone H1 protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00048	Histone-like protein HC2	Probable alginate regulatory protein	Similar to Bordetella pertussis histone H1 SWALL:Q45370 (EMBL:L37438) (182 aa) fasta scores: E(): 7e-09, 41.13% id in 141 aa and to Xanthomonas axonopodis histone h1 xac3058 SWALL:Q8PI40 (EMBL:AE011948) (155 aa) fasta scores: E(): 2e-08, 52.72% id in 110 aa histone-like protein	Histone H1	histone H1	probable histone H1 protein	hypothetical protein	eggshell protein p48	Putative uncharacterized protein	hypothetical protein	hypothetical protein identified by Glimmer2; putative	histone H1 identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	putative histone H1 protein	conserved hypothetical protein KEGG: bur:Bcep18194_A3681 hypothetical protein	membrane spanning protein, required for outer membrane integrity	histone protein	histone protein KEGG: rfr:Rfer_3349 histone protein	Histone protein	conserved hypothetical protein KEGG: bcn:Bcen_0115 hypothetical protein	Putative histone H1-like protein	hypothetical protein identified by Glimmer2; putative	histone H1-like protein HC2	Hypothetical protein	probable histone H1-like protein (alanine/lysin-rich protein)	Hypothetical protein	histone protein KEGG: rfr:Rfer_3349 histone protein	Histone H1 protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00049	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00050	SAM-dependent methyltransferase	Putative uncharacterized protein	Probable transmembrane protein	putative methyltransferase putative methyltransferase YabC containing domain UPF0011	Similar to many proteins of undefined function including: Ralstonia solanacearum probable transmembrane protein Rsc1045 or Rs04205 SWALL:Q8Y0J8 (EMBL:AL646062) (243 aa) fasta scores: E(): 1.4e-20, 37.7% id in 244 aa and to Neisseria meningitidis hypothetical protein Nmb1908 SWALL:Q9JXS3 (EMBL:AE002540) (241 aa) fasta scores: E(): 1.3e-16, 30.93% id in 236 aa conserved hypothetical protein	Hypothetical protein	Similar to Bacteroides thetaiotaomicron putative S-adenosylmethionine-dependent methytransferase BT4190 SWALL:AAO79295 (EMBL:AE016944) (234 aa) fasta scores: E(): 3.8e-80, 87.6% id in 234 aa, and to Neisseria meningitidis hypothetical protein NMA0547 SWALL:Q9JW49 (EMBL:AL162753) (241 aa) fasta scores: E(): 1.4e-36, 46.38% id in 235 aa, and to Neisseria meningitidis hypothetical protein NMB1908 SWALL:Q9JXS3 (EMBL:AE002540) (241 aa) fasta scores: E(): 2.5e-36, 46.38% id in 235 aa. CDS overlaps 29 nt with adjacent CDS conserved hypothetical protein	Uroporphyrin-III C/tetrapyrrole (Corrin/porphyrin) methyltransferase	Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase	Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase	similar to gi|49482716|ref|YP_039940.1| [Staphylococcus aureus subsp. aureus MRSA252], percent identity 71 in 279 aa, BLASTP E(): e-113 tetrapyrrole methylase family protein	conserved hypothetical protein	probable transmembrane protein	Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase	Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase	tRNA/rRNA methyltransferase EC 2.1.1.-	Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase	tetrapyrrole methylase family protein identified by match to protein family HMM PF00590	Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase	Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase	uroporphyrin-III C/tetrapyrrole (Corrin/Porphyri n) methyltransferase	Methyltransferase cytoplasmic protein	Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase KEGG: bur:Bcep18194_A4228 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase	Tetrapyrrole-related methytransferase	Methyltransferase cytoplasmic protein	Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase KEGG: bcn:Bcen_0636 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase	conserved hypothetical protein Conserved hypothetical protein. Homology to bpp3312 of B. parapertussis (trembl|Q7WD15). TIGR00096: conserved hypothetical protein Pfam: Tetrapyrrole (Corrin/Porphyrin) Methyltransferase no signal peptide no TMHs	Putative uncharacterized protein	tetrapyrrole methylase family protein identified by match to protein family HMM PF00590	
CHLTR00051	Putative uncharacterized protein	cell wall associated hydrolases	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00052	Putative uncharacterized protein	similar to antigenic cell wall protein MP2 (GI:38492189) (Aspergillus fumigatus) PMID: 15131215 antigenic cell wall galactomannoprotein, putative	hypothetical protein	jgi|Lotgi1|171085|fgenesh2_pg.C_sca_109000025	Putative uncharacterized protein	Putative uncharacterized protein	Zinc metalloprotease	Putative uncharacterized protein	
CHLTR00053	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein precursor	Putative uncharacterized protein precursor	
CHLTR00054	Coproporphyrinogen III Oxidase	Coproporphyrinogen III oxidase and related FeS oxidoreductases	Oxygen-independent coproporphyrinogen oxidase III	HemN	Putative cog0635, coproporphyrinogen III oxidase and related fe-s oxidoreductases oxidoreductase protein	Similar to oxygen-independent coproporphyrinogen III oxidase	Similar to oxygen-independent coproporphyrinogen III oxidase hypothetical protein	conserved gene (oxygen-independent) coproporphyrinogen III oxidase	Similar to oxygen-independent coproporphyrinogen III oxidase hypothetical protein	identified by similarity to SP:P54304; match to protein family HMM PF02473; match to protein family HMM PF04055; match to protein family HMM TIGR00539 oxygen-independent coproporphyrinogen III oxidase, putative	Oxygen-independent coproporphyrinogen III oxidase	Coproporphyrinogen oxidase, anaerobic	oxygen independent coprophorphyrinogen III oxidase	identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00539 oxygen-independent coproporphyrinogen III oxidase, putative	Probable porphyrin oxidoreductase	coproporphyrinogen III oxidase	Putative uncharacterized protein	Oxygen-independent coproporphyrinogen oxidase III	Oxygen independent coproporphyrinogen III oxidase	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00539 oxygen-independent coproporphyrinogen III oxidase, putative	HemN	Coproporphyrinogen III oxidase protein	Probable oxygen-independent coproporphyrinogen- III oxidase	Mb2409c, hemN, len: 375 aa. Equivalent to Rv2388c, len: 375 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 375 aa overlap). Probable hemN, oxygen-independent coproporphyrinogen III oxidases (EC 1.3.3.-), highly similar to many PUTATIVE OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASES e.g.  Q9RDD2|SCC77.26 from Streptomyces coelicolor (435 aa), FASTA scores: opt: 1358, E(): 1.5e-76, (56.55% identity in 382 aa overlap); BAB51237|MLR4627 from Rhizobium loti (Mesorhizobium loti) (392 aa), FASTA scores: opt: 696, E(): 1.1e-35, (36.8% identity in 383 aa overlap); Q9KUR0|VC0455 from Vibrio cholerae (391 aa), FASTA scores: opt: 691, 2.2e-35, (32.65% identity in 386 aa overlap); P54304|HEMN_BACSU from Bacillus subtilis (366 aa), FASTA scores: opt: 668 , E(): 5.6e-34; (34.9% identity in 327 aa overlap); etc. Equivalent to AAK46752 from Mycobacterium tuberculosis strain CDC1551 (390 aa) but shorter 375 aa.  BELONGS TO THE ANAEROBIC COPROPORPHYRINOGEN III OXIDASE FAMILY. PROBABLE OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE HEMN (COPROPORPHYRINOGENASE) (COPROGEN OXIDASE)	InterProMatches:IPR004559; Molecular Function: coproporphyrinogen oxidase activity (GO:0004109), Cellular Component: cytoplasm (GO:0005737), Biological Process: porphyrin biosynthesis (GO:0006779) coproporphyrinogen III oxidase	oxygen-independent coproporphyrinogen oxidase III	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark oxidoreductase	Oxygen-independent coproporphyrinogen III oxidase	Oxygen-independent coproporphyrogen III oxidase	
CHLTR00055	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00056	Oxoglutarate Dehydrogenase	Transketolase:Dehydrogenase, E1 component	2-oxoglutarate dehydrogenase E1 component	SucA protein	Probable oxoglutarate dehydrogenase oxidoreductase protein	2-oxoglutarate dehydrogenase E1 component	2-oxoglutarate dehydrogenase, E1 subunit	conserved gene 2-oxoglutarate dehydrogenase E1 component)	2-oxoglutarate dehydrogenase, E1 subunit	identified by similarity to EGAD:6612; match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM TIGR00239 2-oxoglutarate dehydrogenase, E1 component	2-oxoglutarate dehydrogenase E1 component	Oxoglutarate dehydrogenase	2-oxoglutarate dehydrogenase E1	2-oxoglutarate dehydrogenase, E1 component	alpha-ketoglutarate dehydrogenase 2-oxoglutarate dehydrogenase E1 component	2-oxoglutarate dehydrogenase E1 component	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark oxoglutarate dehydrogenase	2-oxoglutarate dehydrogenase E1 component	2-oxoglutarate dehydrogenase (decarboxylase component)	2-oxoglutarate dehydrogenase complex, E1 component	similar to Salmonella typhi CT18 2-oxoglutarate dehydrogenase E1 component 2-oxoglutarate dehydrogenase E1 component	Highly similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 2-oxoglutarate dehydrogenase e1 component suca or b0726 or c0803 or z0880 or ecs0751 SWALL:ODO1_ECOLI (SWALL:P07015) (933 aa) fasta scores: E(): 4.7e-115, 39.07% id in 934 aa, and to Mycobacterium bovis probable 2-oxoglutarate dehydrogenase suca suca or mb1280C SWALL:CAD94141 (EMBL:BX248338) (1214 aa) fasta scores: E(): 5e-120, 39.95% id in 911 aa 2-oxoglutarate dehydrogenase E1 component	similar to BR1923, 2-oxoglutarate dehydrogenase, E1 component SucA, 2-oxoglutarate dehydrogenase, E1 component	Oxoglutarate dehydrogenase	Alpha-ketoglutarate dehydrogenase	oxoglutarate dehydrogenase	2-oxoglutarate dehydrogenase E1 component	Putative 2-oxoglutarate dehydrogenase E1 component	Ortholog of S. aureus MRSA252 (BX571856) SAR1425 2-oxoglutarate dehydrogenase E1 component	
CHLTR00057	Dihydrolipoamide Succinyltransferase	identified by similarity to EGAD:12827; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01347 2-oxoglutarate dehydrogenase, E2 component, dihydroipoamide succinyltransferase	Dihydrolipoamide succinyltransferase E2 component	Dihydrolipoamide S-succinyltransferase	Dihydrolipoamide succinyltransferase	2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase	InterProMatches:IPR006255; Molecular Function: dihydrolipoyllysine-residue succinyltransferase activity (GO:0004149), Biological Process: tricarboxylic acid cycle (GO:0006099), Cellular Component: oxoglutarate dehydrogenase complex (GO:0045252) 2-oxoglutarate dehydrogenase complex (dihydrolipoamide transsuccinylase, E2 subunit)	dihydrolipoamide S-succinyltransferase 2-oxoglutarate dehydrogenase E2 component	Similar to Escherichia coli, and Escherichia coli O157:H7 dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex SucB or b0727 or z0881 or ecs0752 SWALL:ODO2_ECOLI (SWALL:P07016) (404 aa) fasta scores: E(): 1.3e-49, 42.85% id in 364 aa, and to Arabidopsis thaliana 2-oxoglutarate dehydrogenase E2 subunit SWALL:Q9ZRQ1 (EMBL:AJ223803) (462 aa) fasta scores: E(): 4e-54, 46.27% id in 376 aa dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex	similar to BR1922, 2-oxoglutarate dehydrogenase, E2 dihydrolipoamide succinyltransferase SucB, 2-oxoglutarate dehydrogenase, E2 dihydrolipoamide succinyltransferase	Dihydrolipoamide S-succinyltransferase	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex	dihydrolipoamide succinyltransferase	Ortholog of S. aureus MRSA252 (BX571856) SAR1424 dihydrolipoamide succinyltransferase E2 component of 2-oxoglutarate dehydrogenase complex	dihydrolipoamide succinyltransferase	2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase	dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex	dihydrolipoyltranssuccinase E2 component 2-oxoglutarate dehydrogenase	go_component: mitochondrial matrix [goid 0005759]; go_process: tricarboxylic acid cycle [goid 0006099]; go_process: 2-oxoglutarate metabolism [goid 0006103] 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase	dihydrolipoamide S-succinyltransferase	Dihydrolipoamide succinyl transferase (E2) of 2-oxoglutarate dehydrogenase	2-oxoglutarate dehydrogenase complex, E2 component (dihydrolipoamide succinyltransferase)	dihydrolipoamide succinyltransferase	ortholog to Escherichia coli bnum: b0727; MultiFun: Metabolism 1.3.4 dihydrolipoamide succinyltransferase E2 component	Dihydrolipoamide succinyltransferase	Similar to Bacillus subtilis dihydrolipoamide succinyltransferase E2 component of 2-oxoglutarate dehydrogenase complex OdhB SW:ODO2_BACSU (P16263) (417 aa) fasta scores: E(): 1.4e-72, 56.840% id in 424 aa, and to Deinococcus radiodurans 2-oxoglutarate dehydrogenase, dihydrolipoamide succinyltransferase E2 component DR0083 TR:Q9RY67 (EMBL:AE001871) (417 aa) fasta scores: E(): 1.7e-53, 44.000% id in 425 aa dihydrolipoamide succinyltransferase E2 component of 2-oxoglutarate dehydrogenase complex	dihydrolipoamide S-succinyltransferase	Dihydrolipoamide acetyltransferase component	
CHLTR00058	Putative uncharacterized protein	Similar to unknown protein YfiH of Escherichia coli	hypothetical protein	Putative uncharacterized protein	UPF0124 protein XF_0940	Uncharacterized YfiH family conserved protein	Putative uncharacterized protein TTHA0362	putative inner membrane protein	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Similar to several proteins of undefined function including: Chlamydia trachomatis hypothetical protein Ct056 SWALL:O84059 (EMBL:AE001280) (243 aa) fasta scores: E(): 3.2e-56, 60.97% id in 246 aa, and to Brucella melitensis hypothetical cytosolic protein Bmei0486 bmei0486 SWALL:Q8YIF8 (EMBL:AE009491) (265 aa) fasta scores: E(): 1.9e-12, 28.06% id in 196 aa conserved hypothetical protein	similar to BMEI0486, identified by sequence similarity to BR1530, conserved hypothetical protein TIGR00726 conserved hypothetical protein TIGR00726	Putative uncharacterized protein yfiH	COG1496 conserved hypothetical protein	Putative inner membrane protein	Putative uncharacterized protein	Protein of unknown function DUF152	Code: S; COG: COG1496 conserved hypothetical protein	Protein of unknown function DUF152	Putative uncharacterized protein	COG1496, Uncharacterized conserved protein.  pfam02578, DUF152, Uncharacterized ACR, YfiH family COG1496 conserved hypothetical protein TIGR00726	Code: S; COG: COG1496 conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Protein of unknown function DUF152	uncharacterized conserved protein COG1496	Code: S; COG: COG1496; orf conserved hypothetical protein	conserved hypothetical protein similarity:fasta; with=UniProt:Q92N75_RHIME (EMBL:SME591790); Rhizobium meliloti (Sinorhizobium meliloti).; Hypothetical protein SMc02683. Hypothetical protein SMc02683.; length=264; id 71.863; 263 aa overlap; query 1-263; subject 1-263	protein of unknown function DUF152 PFAM: protein of unknown function DUF152: (2e-40) KEGG: dra:DR1966 conserved hypothetical protein, ev=6e-88, 69% identity	conserved hypothetical protein	
CHLTR00059	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	Similar to several proteins involved in terpenoid biosynthesis including: Synechococcus elongatus 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase ispg or tlr0996 SWALL:ISPG_SYNEL (SWALL:Q8DK70) (402 aa) fasta scores: E(): 1.1e-43, 47.55% id in 286 aa, and to Catharanthus roseus gcpe protein SWALL:Q84XR5 (EMBL:AY184810) (740 aa) fasta scores: E(): 6.2e-58, 41.1% id in 669 aa 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase	GcpE protein	Similar to Arabidopsis thaliana GcpE protein SWALL:Q9FF59 (EMBL:AB005246) (716 aa) fasta scores: E(): 4.8e-51, 41.96% id in 653 aa, and to Bacteroides thetaiotaomicron GcpE, 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase BT2517 SWALL:Q8A4T0 (EMBL:AE016936) (613 aa) fasta scores: E(): 4.4e-208, 86.98% id in 607 aa putative GcpE terpenoid biosynthesis protein	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase	IspG protein	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase identified by match to protein family HMM PF04551; match to protein family HMM TIGR00612	IspG protein	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase identified by match to protein family HMM PF04551; match to protein family HMM TIGR00612	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase	IspG protein	1-hydroxy-2-methyl-2-butenyl 4-diphosphate synthase	IspG protein	IspG protein	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	Deoxyxylulose biosynthesis protein cytoplasmic protein	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase KEGG: cch:Cag_0349 IspG protein TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase PFAM: IspG family protein	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase	Deoxyxylulose biosynthesis protein cytoplasmic protein	GcpE protein COG821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis [Lipid metabolism]	GcpE protein	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase	GcpE protein COG821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis [Lipid metabolism]	GcpE	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, putative chloroplast precursor (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) (ISPG) go_function: oxidoreductase activity; go_process: terpenoid biosynthesis; isoprenoid biosynthesis	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase	
CHLTR00060	Putative uncharacterized protein	ATPase associated with chromosome architecture	hypothetical membrane spanning protein	Putative membrane protein	Putative membrane protein	
CHLTR00060	Putative uncharacterized protein	ATPase associated with chromosome architecture	hypothetical membrane spanning protein	Putative membrane protein	Putative membrane protein	
CHLTR00061	Ferredoxin	similar to fer2, 2Fe-2S iron-sulfur cluster binding domain. 2Fe-2S ferredoxin	ferredoxin [2Fe-2S] IV	ferredoxin	ferredoxin PFAM: ferredoxin KEGG: rsp:RSP_3190 2Fe-2S ferredoxin	Ferredoxin	Uncharacterized flavoprotein-like protein	Ferredoxin	Ferredoxin	Ferredoxin	Ferredoxin	Ferredoxin	
CHLTR00062	Flagellar Secretion Protein	Pfam: FHIPEP family (Flagellar/Hr/Invasion proteins export pore) Citation: Type III secretion machines: bacterial devices for protein delivery into host cells.  Science. 1999 May 21;284(5418):1322-8. Rev Flagellar biosynthesis pathway, component FlhA	type III secretory flagellar biosynthesis	FlhA flagellar biosynthesis protein	flagellar biosynthesis protein FlhA TIGRFAM: flagellar biosynthesis protein FlhA PFAM: type III secretion FHIPEP protein KEGG: rsp:RSP_1320 flagellar biosynthesis pathway, component FlhA	Flagellar biosynthesis protein	Flagellar biosynthesis protein	Flagellar biosynthesis protein FlhA	Flagellar biosynthesis protein	
CHLTR00062	Flagellar Secretion Protein	Pfam: FHIPEP family (Flagellar/Hr/Invasion proteins export pore) Citation: Type III secretion machines: bacterial devices for protein delivery into host cells.  Science. 1999 May 21;284(5418):1322-8. Rev Flagellar biosynthesis pathway, component FlhA	type III secretory flagellar biosynthesis	FlhA flagellar biosynthesis protein	flagellar biosynthesis protein FlhA TIGRFAM: flagellar biosynthesis protein FlhA PFAM: type III secretion FHIPEP protein KEGG: rsp:RSP_1320 flagellar biosynthesis pathway, component FlhA	Flagellar biosynthesis protein	Flagellar biosynthesis protein	Flagellar biosynthesis protein FlhA	Flagellar biosynthesis protein	
CHLTR00063	Sigma-28/WhiG Family	RNA polymerase sigma factor	RNA polymerase sigma factor	RNA polymerase sigma factor	identified by similarity to SP:P31804; match to protein family HMM PF04542; match to protein family HMM PF04545 RNA polymerase sigma factor, sigma-F	InterProMatches:IPR000943; regulon includes genes involved in flagellar synthesis, motility, chemotaxis, autolysis,Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352) RNA polymerase sigma-28 factor (sigma-D)	DNA-directed RNA polymerase sigma-28 factor sigma-D	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark RNA polymerase sigma factor FliA	IPR000943: Sigma-70 factor family sigma F (sigma 28) factor of RNA polymerase, transcription of late flagellar genes (class 3a and 3b operons)	similar to Salmonella typhi CT18 RNA polymerase sigma transcription factor for flagellar operon RNA polymerase sigma transcription factor for flagellar operon	Similar to many including: Streptomyces coelicolor RNA polymerase sigma factor WhiG or sco5621 or sc2e1.38 SWALL:RPSW_STRCO (SWALL:P17211) (280 aa) fasta scores: E(): 5.2e-30, 38.71% id in 248 aa and Streptomyces coelicolor RNA polymerase sigma factor SWALL:Q59836 (EMBL:J03169) (258 aa) fasta scores: E(): 2e-30, 37.89% id in 256 aa putative RNA polymerase sigma factor	RNA polymerase sigma factor	RNA polymerase sigma factor	RNA polymerase sigma factor flagellar operon FliA	Flagellar biosynthesis sigma factor FliA	DNA-directed RNA polymerase specialized sigma 28 subunit	RNA polymerase sigma factor for flagellar operon	RNA polymerase sigma factor	identified by similarity to SP:P29248; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02479 motility sigma factor FliA	identified by similarity to SP:P29248; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02479 RNA polymerase sigma factor for flagellar operon	identified by match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02479 motility sigma factor FliA	Sigma-70 region 4	Sigma-70 region 4	Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4	flagellar biosynthesis; regulation of flagellar operons; Code: K; COG: COG1191 alternative sigma factor 28	identified by similarity to SP:P10726; similarity to SP:P31804; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02479 RNA polymerase sigma factor for flagellar operon	RNA polymerase sigma factor	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 7590326, 8550423; Product type f : factor Polar Flagellar-specific RNA polymerase sigma factor FliA (sigma F)	Gene neighborhood linkage with flagellar biosynthesis proteins sigma factor FliA (Sigma-28 group, flagellar)	
CHLTR00064	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	tyrosyl tRNA synthetase	Tyrosyl-tRNA synthetase 1	Tyrosyl-tRNA synthetase	identified by match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234 tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	identified by similarity to SP:P00951; match to protein family HMM PF00579; match to protein family HMM TIGR00234 tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Mb1715, tyrS, len: 424 aa. Equivalent to Rv1689, len: 424 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 424 aa overlap). Probable tyrS, Tyrosyl-tRNA synthase (EC 6.1.1.1), highly similar to many e.g. SYY_ECOLI|P00951 Escherichia coli (EC 6.1.1.1) (423 aa), FASTA scores: opt: 1271, E(): 0, (47.3% identity in 419 aa overlap). Contains PS00178 Aminoacyl-transfer RNA synthetases class-I signature. BELONGS TO CLASS-I AMINOACYL-TRNA SYNTHETASE FAMILY. Probable Tyrosyl-tRNA synthase tyrS (TYRRS)	InterProMatches:IPR002307; Molecular Function: tyrosine-tRNA ligase activity (GO:0004831), Molecular Function: ATP binding (GO:0005524), Biological Process: tyrosyl-tRNA aminoacylation (GO:0006437) tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	COG0162 Tyrosyl-tRNA synthetase tyr-tRNA synthetase	Tyrosyl-tRNA synthetase	IPR001412: Aminoacyl-tRNA synthetase, class I; IPR002307: Tyrosyl-tRNA synthetase, class Ib; IPR002942: RNA-binding S4 tyrosine tRNA synthetase	Tyrosyl-tRNA synthetase	similar to Salmonella typhi CT18 tyrosyl-tRNA synthetase tyrosyl-tRNA synthetase	Similar to Escherichia coli, and Escherichia coli O157:H7 tyrosyl-tRNA synthetase TyrS or b1637 or z2650 or ecs2346 SWALL:SYY_ECOLI (SWALL:P00951) (423 aa) fasta scores: E(): 1.6e-54, 41.72% id in 417 aa and Bacillus stearothermophilus tyrosyl-tRNA synthetase TyrS SWALL:SYY_BACST (SWALL:P00952) (419 aa) fasta scores: E(): 1.6e-55, 41.41% id in 425 aa tyrosyl-tRNA synthetase	similar to BR0926, tyrosyl-tRNA synthetase TyrS, tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	
CHLTR00065	6-phosphogluconate dehydrogenase, decarboxylating	6-phosphogluconate dehydrogenase, decarboxylating	6-phosphogluconate dehydrogenase, decarboxylating	6-phosphogluconate dehydrogenase, decarboxylating	identified by match to protein family HMM PF00393; match to protein family HMM PF03446; match to protein family HMM TIGR00873 6-phosphogluconate dehydrogenase, decarboxylating	6-phosphogluconate dehydrogenase	6-phosphogluconate dehydrogenase, decarboxylating	6-phosphogluconate dehydrogenase, decarboxylating	6-phosphogluconate dehydrogenase, decarboxylating	6-phosphogluconate dehydrogenase, decarboxylating	6-phosphogluconate dehydrogenase, decarboxylating	Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616), Biological Process: pentose-phosphate shunt (GO:0006098) 6-phosphogluconate dehydrogenase, decarboxylating YqjI	6-phosphogluconate dehydrogenase, decarboxylating	6-phosphogluconate dehydrogenase, decarboxylating	COG0362 6-phosphogluconate dehydrogenase 6-phosphogluconate dehydrogenase	6-phosphogluconate dehydrogenase, decarboxylating	IPR006183: 6-phosphogluconate dehydrogenase; IPR006184: 6-phosphogluconate-binding site gluconate-6-phosphate dehydrogenase, decarboxylating	similar to Salmonella typhi CT18 6-phosphogluconate dehydrogenase, decarboxylating 6-phosphogluconate dehydrogenase, decarboxylating	Similar to Haemophilus influenzae 6-phosphogluconate dehydrogenase, decarboxylating Gnd or Hi0553 SWALL:6PGD_HAEIN (SWALL:P43774) (484 aa) fasta scores: E(): 4.5e-105, 57.56% id in 469 aa, and to Actinobacillus actinomycetemcomitans 6-phosphogluconate dehydrogenase, decarboxylating gnD SWALL:6PGD_ACTAC (SWALL:P70718) (484 aa) fasta scores: E(): 3.7e-103, 55.43% id in 469 aa 6-phosphogluconate dehydrogenase, decarboxylating	similar to BRA0111, 6-phosphogluconate dehydrogenase, decarboxylating Gnd, 6-phosphogluconate dehydrogenase, decarboxylating	phosphogluconate dehydrogenase (decarboxylating)	6-phosphogluconate dehydrogenase, decarboxylating	6-phosphogluconate dehydrogenase,decarboxylating	Ortholog of S. aureus MRSA252 (BX571856) SAR1589 6-phosphogluconate dehydrogenase, decarboxylating	Phosphogluconate dehydrogenase, decarboxylating	phosphogluconate dehydrogenase (decarboxylating)	6-phosphogluconate dehydrogenase	identified by match to protein family HMM PF00393; match to protein family HMM PF03446; match to protein family HMM TIGR00873 6-phosphogluconate dehydrogenase, decarboxylating	
CHLTR00066	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding membrane protein	GTP-binding protein lepA	GTP-binding protein lepA	Similar to GTP-binding elongation factor hypothetical protein	conserved gene GTP binding elongation factor LepA	Similar to GTP-binding elongation factor hypothetical protein	GTP-binding protein lepA 1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01393 GTP-binding protein LepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein	identified by similarity to SP:P37949; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF06421; match to protein family HMM TIGR00231; match to protein family HMM TIGR01393 GTP-binding protein LepA	GTP-binding protein lepA	GTP-binding protein	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF06421; match to protein family HMM TIGR00231; match to protein family HMM TIGR01393 GTP-binding protein LepA	GTP-binding protein lepA	GTP-binding protein LepA	GTP-binding protein lepA	Mb2427c, lepA, len: 653 aa. Equivalent to Rv2404c, len: 653 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 653 aa overlap). Probable lepA, GTP-binding protein (a protein of unknown function, but apparently with membrane-related functions and very similar to protein synthesis elongation factors; see citations below). Equivalent to P53530|LEPA_MYCLE|ML0611|B1937_F3_81 GTP-BINDING PROTEIN from Mycobacterium leprae (646 aa), FASTA scores: opt: 3610, E(): 1.2e-205, (88.0% identity in 649 aa overlap).  Also highly similar to many GTP-BINDING PROTEINS LEPA e.g.  Q9RDC9|LEPA_STRCO|SCC77.29c from Streptomyces coelicolor (622 aa), FASTA scores: opt: 3046, E(): 2.3e-172, (74.3% identity in 626 aa overlap); P37949|LEPA_BACSU from B.  subtilis (612 aa), FASTA scores: opt: 2430, E(): 5.3e-136, (58.7% identity in 610 aa overlap); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop), and PS00301 GTP-binding elongation factors signature. BELONGS TO THE GTP-BINDING ELONGATION FACTOR FAMILY, LEPA SUBFAMILY. PROBABLE GTP-BINDING PROTEIN LEPA (GTP-BINDING ELONGATION FACTOR)	InterProMatches:IPR006297; Molecular Function: GTP binding (GO:0005525) GTP-binding protein	
CHLTR00067	ADP,ATP carrier protein 1	Putative uncharacterized protein	Putative uncharacterized protein	conserved hypothetical protein	ADP,ATP carrier protein	ATP/ADP translocase	ADP/ATP translocase	putative membrane protein	nucleotide transport protein	conserved hypothetical protein KEGG: xfa:XF1738 hypothetical protein	putative transporter identified by similarity to SP:O84068	ADP,ATP carrier protein	AAA family transporter: ADP/ATP (chloroplast) go_component: integral to membrane; go_function: ATP:ADP antiporter activity; ATP binding; go_process: transport	ATP/ADP translocase	ADP,ATP carrier protein	ATP/ADP translocase	ATP/ADP translocase	ADP,ATP carrier protein	ADP,ATP carrier protein	major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1 KEGG: mfa:Mfla_1799 major facilitator superfamily MFS_1	ADP,ATP carrier protein	Putative membrane protein	Putative transmembrane protein	Major facilitator superfamily MFS_1	ADP,ATP carrier protein	ADP,ATP carrier protein	Putative uncharacterized protein	Putative uncharacterized protein	ADP/ATP carrier protein	
CHLTR00068	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00069	Uncharacterized metal-binding lipoprotein CT_067	High-affinity zinc transport system substrate- binding protein	Molecular Function: binding (GO:0005488), Cellular Component: periplasmic space (sensu Gram-negative Bacteria) (GO:0030288) manganese transport system substrate-binding protein	Mn2+/Zn2+ ABC transporter substrate-binding protein	Metal ABC transporter substrate-binding lipoprotein precursor	Similar to Bacillus subtilis manganese-binding lipoprotein MntA precursor SWALL:MNTA_BACSU (SWALL:O34385) (306 aa) fasta scores: E(): 1.3e-15, 25.56% id in 309 aa and Pirellula sp manganese ABC transporter substrate binding protein mtsa or rb12440 SWALL:CAD77589 (EMBL:BX294155) (366 aa) fasta scores: E(): 1.5e-16, 29.37% id in 320 aa ABC transporter, substrate binding lipoprotein	Putative uncharacterized protein gbs1589	ABC transporter, periplasmic binding protein	identified by match to PFAM protein family HMM PF01297 manganese ABC transporter, manganese-binding adhesion liprotein	Putative periplasmic binding protein	ABC transporter substrate-binding protein - manganese transport.	Periplasmic solute binding protein	Best Blastp Hit: gb|AAG30300.1| (AY010757) periplasmic binding protein MntC [Neisseria gonorrhoeae] COG0803 Zn-binding (lipo) protein of the ABC-type Zn putative ABC transporter, periplasmic binding protein	identified by similarity to GB:AAD56936.1; match to protein family HMM PF01297 metal ABC transporter, metal-binding lipoprotein	Periplasmic solute binding protein	periplasmic solute binding protein	Periplasmic solute binding protein	putative cation ABC transporter,substrate-binding protein start codon not provided	Periplasmic solute binding protein	periplasmic solute binding protein PFAM: periplasmic solute binding protein: (1.9e-77) KEGG: dra:DR2523 adhesin B, ev=3e-98, 68% identity	conserved hypothetical protein	Periplasmic solute binding protein	Twin-arginine translocation pathway signal TIGRFAM: Twin-arginine translocation pathway signal: (0.078) PFAM: periplasmic solute binding protein: (9e-94) KEGG: sil:SPO3366 zinc/manganese/iron ABC transporter, periplasmic zinc/manganese/iron-binding protein, ev=1e-124, 73% identity	periplasmic solute binding protein	Periplasmic solute binding protein	ABC transporter, substrate binding protein, possibly Mn	ABC transporter, substrate binding protein, possibly Mn	Periplasmic solute binding protein	hypothetical protein similarity to COG0803 ABC-type Mn/Zn transport system, periplasmic Mn/Zn-binding (lipo)protein (surface adhesin A)(Evalue: 2E-73)	
CHLTR00070	Probable metal transport system ATP-binding protein CT_068	MntA manganese transport system ATP-binding protein	ABC transport protein, ATP-binding component	ABC transport protein, ATP-binding component	Zinc transport system ATP-binding protein TroB	ABC transporter related	ABC transport protein, ATP-binding component	
CHLTR00071	Probable metal transport system membrane protein CT_069	High-affinity zinc transport system permease protein	Similar to Bacillus subtilis manganese transport system membrane protein MntC SWALL:MNTC_BACSU (SWALL:O35024) (435 aa) fasta scores: E(): 2.7e-16, 23.52% id in 391 aa and Pirellula sp manganese ABC transporter permease protein Rb12437 SWALL:CAD77586 (EMBL:BX294155) (444 aa) fasta scores: E(): 2.6e-13, 23.51% id in 421 aa ABC transporter, membrane permease	ABC-3	ABC-3	ABC transporter of metals	ABC-3 PFAM: ABC-3: (2.2e-59) KEGG: sil:SPO3364 zinc/manganese/iron ABC transporter, permease protein, ev=1e-178, 81% identity	ABC-type Mn2+/Zn2+ transport systems permease components	hypothetical protein similarity to COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components(Evalue: 2E-84)	Mn2+/Zn2+ ABC transporter, permease	ABC-3	putative zinc/manganese/iron ABC transporter, permease protein	ABC-type Mn/Zn transport system, membrane protein	ABC-3 protein PFAM: transport system permease protein; ABC-3 protein KEGG: jan:Jann_2082 ABC-3	MntB manganese transport system membrane protein	ABC-3 PFAM: ABC-3 KEGG: jan:Jann_2082 ABC-3	ABC-3 protein	ABC-3 protein precursor	ABC-3 protein PFAM: ABC-3 protein KEGG: rrs:RoseRS_3068 ABC-3 protein	Metal cation ABC superfamily ATP binding cassette transporter, membrane protein	ABC-3 protein	ABC transport protein, membrane permease precursor	ABC transport protein, membrane permease precursor	Putative uncharacterized protein	ABC-3 protein	ABC transporter, permease protein	ABC-3 protein	ABC-type Mn/Zn transport system, permease component,	ABC-3 protein	
CHLTR00072	Probable metal transport system membrane protein CT_070	MntB Manganese transport system membrane protein	identified by similarity to GB:AAK33470.1; match to protein family HMM PF00950 zinc/manganese/iron ABC transporter, permease protein	Mn2+/Zn2+ ABC transporter permease	IPR001626: ABC transporter, family 3 iron transporter: fur regulated	similar to Salmonella typhi CT18 Iron transport protein, inner membrane component Iron transport protein, inner membrane component	Similar to Bacillus subtilis manganese transport system membrane protein MntC SWALL:MNTC_BACSU (SWALL:O35024) (435 aa) fasta scores: E(): 4.1e-14, 25% id in 268 aa and Fusobacterium nucleatum high-affinity zinc uptake system membrane protein ZnuB fn0670 SWALL:Q8RFM2 (EMBL:AE010578) (305 aa) fasta scores: E(): 5.4e-11, 25.17% id in 290 aa ABC transporter, membrane permease	Putative uncharacterized protein gbs1587	identified by match to PFAM protein family HMM PF00950 manganese ABC transporter, permease protein	ABC transporter component, possibly Mn transport	Fur regulated Salmonella iron transporter	identified by similarity to GB:AAD56938.1; match to protein family HMM PF00950 metal ABC transporter, permease protein	ABC-type Mn2+/Zn2+ transport system permease components	Code: P; COG: COG1108 Iron transport protein inner membrane component	Code: P; COG: COG1108 Iron transport protein, inner membrane component	ABC transporter component, possibly Mn transport	ABC-3	manganese/zinc/iron chelate ABC transporter (MZT) family, permease protein identified by similarity to GB:AAD56938.1; match to protein family HMM PF00950	ABC transporter component, possibly Mn transport	Code: P; COG: COG1108 Iron transport protein, inner membrane component	ABC transporter of metals	ABC-3 PFAM: ABC-3: (5.6e-26) KEGG: sil:SPO3363 zinc/manganese/iron ABC transporter, permease protein, ev=1e-143, 84% identity	Iron transport protein, inner membrane component	ABC transporter component, possibly Mn transport	ABC-3	hypothetical protein similarity to COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components(Evalue: 3E-76)	Mn2+/Zn2+ ABC transporter, permease	ABC transporter component, possibly Mn transport COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	ABC transporter component, possibly Mn transport	
CHLTR00073	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-d-xylulose 5-phosphate reductoisomerase	identified by match to protein family HMM PF02670; match to protein family HMM TIGR00243 1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	identified by match to protein family HMM PF02670; match to protein family HMM TIGR00243 1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	Mb2895c, dxr, len: 413 aa. Equivalent to Rv2870c, len: 413 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 413 aa overlap). Probable dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.-), equivalent to Q9CBU3|DXR|ML1583 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE from Mycobacterium leprae (406 aa), FASTA scores: opt: 2145, E(): 1e-124, (84.05% identity in 395 aa overlap). Also highly similar to others e.g. Q9AJD7|DXR from Kitasatospora griseola (Streptomyces griseolosporeus) (386 aa), FASTA scores: opt: 1176, E(): 5.2e-65, (56.45% identity in 388 aa overlap); Q9KYS1|DXR_STRCO|SC5H4.18 from Streptomyces coelicolor (401 aa), FASTA scores: opt: 1079, E(): 5.1e-59, (52.25% identity in 396 aa overlap); P45568|DXR|B0173 from Escherichia coli strain K12 (398 aa), FASTA scores: opt: 120, E(): 0.032, (52.9% identity in 34 aa overlap); etc. Contains PS00133 Zinc carboxypeptidases, zinc-binding region 2 signature.  BELONGS TO THE DXR FAMILY. N-terminus shortened since first submission. PROBABLE 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE DXR (DXP REDUCTOISOMERASE) (1-DEOXYXYLULOSE-5-PHOSPHATE REDUCTOISOMERASE)	InterProMatches:IPR003821; Molecular Function: catalytic activity (GO:0003824), Biological Process: isoprenoid biosynthesis (GO:0008299) 1-deoxy-D-xylulose-5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	similar to Salmonella typhi CT18 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1-deoxy-D-xylulose 5-phosphate reductoisomerase	Similar to Bacillus halodurans 1-deoxy-D-xylulose 5-phosphate reductoisomerase Dxr or bh2421 SWALL:DXR_BACHD (SWALL:Q9KA69) (382 aa) fasta scores: E(): 4.7e-53, 40.05% id in 382 aa and Listeria monocytogenes 1-deoxy-D-xylulose 5-phosphate reductoisomerase dxr or lmo1317 SWALL:DXR_LISMO (SWALL:Q8Y7G4) (380 aa) fasta scores: E(): 2.2e-53, 41.2% id in 381 aa 1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1-deoxy-D-xylulose 5-phosphate reductoisomerase	
CHLTR00075	Predicted OMP l	conserved hypothetical protein	predicted acetyltransferase and Hydrolase with the alpha/beta hydrolase fold COG1075	putative lipase Similar to codons 45 to 245 of Burkholderia glumae (Pseudomonas glumae) LipA lipase precursor (ec 3.1.1.3) (triacylglycerol lipase). UniProt:LIP_BURGL (EMBL:A16323) (358 aa),and to Bradyrhizobium japonicum bll2323 protein.  UniProt:Q89SS7 (EMBL:BA000040) (224 aa) similarity:fasta; with=UniProt:LIP_BURGL (EMBL:A16323); Burkholderia glumae (Pseudomonas glumae).; lipA; Lipase precursor (EC 3.1.1.3) (Triacylglycerol lipase).; length=358; id 26.214; 206 aa overlap; query 5-195; subject 50-243 similarity:fasta; with=UniProt:Q89SS7 (EMBL:BA000040); Bradyrhizobium japonicum.; Bll2323 protein.; length=224; id 47.664; 214 aa overlap; query 5-217; subject 15-221	outer membrane protein	lipase, putative KEGG: sil:SPO0890 lipase, putative, ev=4e-78, 63% identity	Hypothetical protein	conserved hypothetical protein	Lipase, putative	Acetyltransferase or hydrolase non-cytoplasmic protein	Acetyltransferase or hydrolase non-cytoplasmic protein	conserved hypothetical protein KEGG: abo:ABO_1607 hypothetical protein	esterase lipase	Hypothetical protein	Hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein precursor	Putative uncharacterized protein	Exported protein precursor	Exported protein precursor	PGAP1 family protein	Putative uncharacterized protein	conserved hypothetical protein KEGG: mex:Mext_1008 hypothetical protein	Lipase, putative	Putative uncharacterized protein	Putative uncharacterized protein	Exported protein	Conserved domain protein	
CHLTR00074	Putative zinc metalloprotease CT_072	Putative uncharacterized protein	Zinc metallopeptidase protein	Similar to many predicted metalloproteases including: Borrelia burgdorferi hypothetical zinc metalloprotease Bb0118 SWALL:Y118_BORBU (SWALL:O51145) (437 aa) fasta scores: E(): 1e-13, 27.95% id in 322 aa and Chlamydia trachomatis hypothetical zinc metalloprotease Ct072 SWALL:Y072_CHLTR (SWALL:O84075) (619 aa) fasta scores: E(): 4.2e-150, 59.51% id in 620 aa putative metalloprotease	Peptidase M50, putative membrane-associated zinc metallopeptidase	Putative membrane-associated Zn-dependent protease	membrane-associated Zn-dependent proteases EC 3.4.24.-	Zinc metalloprotease inner membrane protein	Zinc metalloprotease inner membrane protein	peptidase, M50A (S2P protease) subfamily identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054	membrane endopeptidase, M50 family	peptidase M50, putative membrane-associated zinc metallopeptidase	Putative membrane-associated zinc metalloprotease	Putative membrane-associated zinc metalloprotease	Peptidase M50	Putative membrane-associated zinc metalloprotease precursor	Membrane-associated protease	Putative membrane-associated zinc metalloprotease	integral membrane protein Code: M; COG: COG0750	Membrane-associated metallopeptidase, M50 family	Membrane-associated zinc metalloprotease	Peptidase M50 precursor	Membrane-associated zinc metalloprotease	Putative protease precursor	Putative protease precursor	Zinc metalloprotease	Putative membrane-associated Zn-dependent metalloprotease, M50B family ; putative membrane protein	Peptidase M50 precursor	Peptidase M50	
CHLTR00076	DNA replication and repair protein recF	DNA replication and repair protein recF	DNA replication and repair protein recF	RecF recombinational DNA repair ATPase	conserved gene DNA recombination and repair protein ATPase RecF	RecF recombinational DNA repair ATPase	DNA replication and repair protein recF	identified by similarity to EGAD:33333; match to protein family HMM PF00470; match to protein family HMM PF02463; match to protein family HMM TIGR00611 DNA replication and repair protein RecF	DNA replication and repair protein RecF	DNA replication and repair protein RecF	identified by similarity to SP:P13456; match to protein family HMM TIGR00611 DNA replication and repair protein RecF	DNA repair and genetic recombination protein	DNA replication and repair protein recF	DNA replication and repair protein recF	DNA replication and repair protein recF	DNA replication and repair protein recF	DNA replication and repair protein recF	DNA replication and repair protein recF	Mb0003, recF, len: 385 aa. Equivalent to Rv0003, len: 385 aa, from Mycobacterium tuberculosis strain H37Rv, (99.5% identity in 385 aa overlap). recF, DNA replication and repair protein (see citations below), equivalent to others Mycobacterial DNA replication and repair proteins e.g. NP_301131.1|NC_002677 from Mycobacterium leprae (385 aa); Q9L7L5|RECF_MYCPA from Mycobacterium avium subsp.  paratuberculosis (385 aa); P50916|RECF_MYCSM from Mycobacterium smegmatis (384 aa); etc. Also highly similar to others e.g. P36176|RECF_STRCO DNA REPLICATION AND REPAIR PROTEIN from Streptomyces coelicolor (373 aa); NP_440892.1|NC_000911 from Synechocystis sp. strain PCC 6803 (384 aa); NP_469352.1|NC_003212 from Listeria innocua (370 aa); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop), PS00617 RecF protein signature 1, and PS00618 RecF protein signature 2. BELONGS TO THE RECF FAMILY. DNA REPLICATION AND REPAIR PROTEIN RECF (SINGLE-STRAND DNA BINDING PROTEIN)	InterProMatches:IPR001238; DNA repair and genetic recombination,Molecular Function: single-stranded DNA binding (GO:0003697), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281) DNA repair RecF	DNA replication and repair protein RecF	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark DNA replication and repair RecF protein	RecF DNA repair and genetic recombination protein	RecF protein	DNA replication and repair protein recF	IPR001238: RecF protein; IPR002017: Spectrin repeat gap repair protein	Recombinational DNA repair ATPase, RecF	similar to Salmonella typhi CT18 recF protein recF protein	Similar to Bacillus halodurans DNA replication and repair protein RecF or bh0004 SWALL:RECF_BACHD (SWALL:Q9RC99) (371 aa) fasta scores: E(): 4.8e-34, 35.12% id in 373 aa and Clostridium acetobutylicum DNA replication and repair protein RecF or cac0004 SWALL:RECF_CLOAB (SWALL:Q97N32) (363 aa) fasta scores: E(): 1.1e-33, 32.32% id in 365 aa DNA replication and repair protein	
CHLTR00077	DNA polymerase III subunit beta	DNA polymerase III, beta chain	DNA polymerase III subunit beta	DnaN protein	DNA polymerase III, beta chain	Probable dna polymerase III (Beta chain) protein	DNA polymerase III, beta chain	DNA polymerase III, beta chain	conserved gene DNA polymerase III beta chain	DNA polymerase III, beta chain	DNA-directed DNA polymerase III, beta chain	identified by similarity to EGAD:16050; match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663 DNA polymerase III, beta subunit	DNA polymerase III beta subunit	identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663 DNA polymerase III, beta subunit	DNA-directed DNA polymerase, beta subunit	DNA polymerase III, beta chain	DNA polymerase III, beta chain	DNA POLYMERASE III, BETA CHAIN	DNA polymerase III beta subunit	identified by similarity to OMNI:NTL01CJ00004; match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663 DNA polymerase III, beta subunit	DNA polymerase III subunit beta	DNA polymerase III, beta subunit	DNA polymerase III subunit beta	Mb0002, dnaN, len: 402 aa. Equivalent to Rv0002, len: 402 aa, from Mycobacterium tuberculosis strain H37Rv, (99.8% identity in 402 aa overlap). dnaN, DNA polymerase III (beta chain) (EC 2.7.7.7) (see citations below), equivalent to other Mycobacterial DNA POLYMERASES III BETA CHAIN e.g. NP_301130.1|NC_002677 from Mycobacterium leprae (399 aa); Q9L7L6|DP3B_MYCPA from Mycobacterium avium subsp. paratuberculosis (399 aa); P52851|DP3B_MYCSM from Mycobacterium smegmatis (397 aa); etc. Also highly similar to others e.g. P27903|DP3B_STRCO DNA POLYMERASE III BETA CHAIN from Streptomyces coelicolor (376 aa), FASTA scores: opt: 1189, E(): 0, (52.8% identity in 337 aa overlap); P21174|DP3B_MICLU from Micrococcus luteus (310 aa); P52023|DP3B_SYNP7 from Synechococcus sp. strain PCC 7942 (375 aa); etc. Overlaps and extends CDS in neighbouring cosmid MTCY10H4.01. DNA POLYMERASE III (BETA CHAIN) DNAN (DNA NUCLEOTIDYLTRANSFERASE)	InterProMatches:IPR001001; Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA replication (GO:0006260), Molecular Function: 3'-5'-exonuclease activity (GO:0008408) DNA polymerase III (beta subunit)	DNA-directed DNA polymerase III beta subunit DnaN	DNA polymerase III beta-subunit	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark DNA polymerase III beta chain	DNA polymerase III, beta chain	
CHLTR00079	Thiamine biosynthesis lipoprotein apbE	ApbE family	Thiamine biosynthesis lipoprotein ApbE	identified by similarity to SP:P41780; match to protein family HMM PF02424 thiamin biosynthesis lipoprotein ApbE	putative thiamine biosynthesis lipoprotein	similar to Salmonella typhi Ty2 thiamine biosynthesis protein thiamine biosynthesis protein	Similar to Haemophilus influenzae thiamine biosynthesis lipoprotein ApbE precursor hi0172 SWALL:APBE_HAEIN (SWALL:P44550) (346 aa) fasta scores: E(): 3.4e-23, 29.44% id in 326 aa, and to Vibrio cholerae thiamin biosynthesis lipoprotein ApbE vc2289 SWALL:Q9KPS3 (EMBL:AE004300) (367 aa) fasta scores: E(): 1.1e-22, 29.29% id in 314 aa thiamine biosynthesis lipoprotein	Thiamine biosynthesis lipoprotein ApbE	Thiamine biosynthesis lipoprotein	Putative thiamine biosynthesis protein	Thiamin biosynthesis lipoprotein ApbE	COG1477 maturation factor of nitrous oxide reductase	iron-sulfur cluster assembly/repair protein ApbE	Similar to: HI0172, APBE_HAEIN thiamine biosynthesis lipoprotein ApbE	Similar to Salmonella typhimurium thiamine biosynthesis lipoprotein ApbE precursor or STM2266 SWALL:APBE_SALTY (SWALL:P41780) (350 aa) fasta scores: E(): 1.1e-26, 31.57% id in 304 aa, and to Bacteroides thetaiotaomicron thiamine biosynthesis lipoprotein ApbE precursor BT4560 SWALL:AAO79665 (EMBL:AE016945) (338 aa) fasta scores: E(): 3.7e-98, 76.27% id in 333 aa, and to Vibrio cholerae thiamin biosynthesis lipoprotein ApbE vc2289 SWALL:Q9KPS3 (EMBL:AE004300) (367 aa) fasta scores: E(): 2.8e-31, 36.67% id in 349 aa. Putative alternative start site at codon 9 putative thiamine biosynthesis lipoprotein	Membrane-associated lipoprotein involved in thiamine biosynthesis ApbE protein	Thiamine biosynthesis lipoprotein, putative	Thiamine biosynthesis lipoprotein ApbE	Probable thiamine biosynthesis protein apbE	Thiamine biosynthesis lipoprotein apbE	Thiamine biosynthesis lipoprotein APBE precursor	thiamine biosynthesis lipoprotein ApbE precursor	identified by similarity to SP:P41780; match to protein family HMM PF02424 thiamin biosynthesis lipoprotein ApbE	thiamine biosynthesis lipoprotein	identified by match to protein family HMM PF02424 thiamine biosynthesis lipoprotein, putative	identified by match to protein family HMM PF02424 ApbE family superfamily	ApbE-like lipoprotein	Best Blastp Hit: pir||F81184 thiamin biosynthesis lipoprotein ApbE NMB0563 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225790|gb|AAF40991.1| (AE002412) thiamine biosynthesis lipoprotein ApbE [Neisseria meningitidis MC58] COG1477 Membrane-associated lipoprotein ApbE putative thiamine biosynthesis protein	ApbE-like lipoprotein	
CHLTR00078	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SmpB protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	similar to SsrA-binding protein hypothetical protein	conserved gene SsrA (tmRNA) binding protein	similar to SsrA-binding protein hypothetical protein	SsrA-binding protein	identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086 SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein tmRNA binding protein SmpB	identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086 SsrA-binding protein	SsrA-binding protein	tmRNA-binding protein SsrA	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086 SsrA-binding protein	SsrA-binding protein	SsrA-binding (TmRNA-binding) protein	SsrA-binding protein	Mb3127c, smpB, len: 160 aa. Equivalent to Rv3100c, len: 160 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 160 aa overlap). Probable smpB, small protein b related to several bacterial small protein b homologs e.g. O32881|SSRP_MYCLE|ML0671|MLCB1779.19c from Mycobacterium leprae (160 aa), FASTA scores: opt: 914, E(): 1.1e-52, (84.9% identity in 159 aa overlap); Q9L1S9|SMPB from Streptomyces coelicolor (159 aa), FASTA scores: opt: 568, E(): 3.3e-30, (55.15% identity in 145 aa overlap); O32230|SSRP_BACSU from Bacillus subtilis (156 aa), FASTA scores: opt: 511, E(): 1.7e-26, (47.05% identity in 153 aa overlap); etc. BELONGS TO THE SSRP FAMILY. PROBABLE SSRA-BINDING PROTEIN SMPB	InterProMatches:IPR000037; Molecular Function: RNA binding (GO:0003723), Biological Process: protein biosynthesis (GO:0006412) tmRNA-binding protein	
CHLTR00080	Bifunctional protein folD	Bifunctional protein folD	Bifunctional protein folD	Bifunctional protein folD	identified by similarity to EGAD:45761; match to protein family HMM PF00763; match to protein family HMM PF02882 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	Methylenetetrahydrofolate dehydrogenase	FolD bifunctional protein	identified by similarity to SP:P54382; match to protein family HMM PF00763; match to protein family HMM PF02882 folD bifunctional protein	Methylenetetrahydrofolate dehydrogenase	Bifunctional protein folD	Bifunctional protein folD	identified by match to protein family HMM PF00763; match to protein family HMM PF02882 folD bifunctional protein	Bifunctional protein folD	Mb3391c, folD, len: 281 aa. Equivalent to Rv3356c, len: 281 aa, from Mycobacterium tuberculosis strain H37Rv, (99.6% identity in 281 aa overlap). Probable folD, bifunctional enzyme include methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5) and methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9), equivalent to O32879|FOLD|ML0674 METHYLENETETRAHYDROFOLATE DEHYDROGENASE (PUTATIVE METHYLENETETRAHYDROFOLATE DEHYDROGENASE/METHENYLTETRAHYDROFOLATE CYCLOHYDROLASE) from Mycobacterium leprae (282 aa), FASTA scores: opt: 1624, E(): 1.2e-93, (86.45% identity in 281 aa overlap).  Also similar to many others e.g. Q9K3J6|FOLD from Streptomyces coelicolor (284 aa), FASTA scores: opt: 1223, E(): 9.5e-69, (66.65% identity in 279 aa overlap); Q9K966|FOLD from Bacillus halodurans (279 aa), FASTA scores: opt: 886, E(): 7.7e-48, (47.15% identity in 280 aa overlap); P54382|FOLD_BACSU from Bacillus subtilis (283 aa), FASTA scores: opt: 820, E(): 9.7e-44, (45.7% identity in 280 aa overlap); P51696|FOLD_PHOPO from Photobacterium phosphoreum (285 aa), FASTA scores: opt: 778, E(): 4e-41, (44.9% identity in 283 aa overlap); P24186|FOLD_ECOLI|ADS|B0529 from Escherichia coli (287 aa), FASTA scores: opt: 741, E(): 0,44.4, (44.4% identity in 277 aa overlap); etc. Also highly similar to MLCB1779_9 from Mycobacterium leprae cosmid B1779 (282 aa) (86.5% identity in 281 aa overlap). SIMILAR TO OTHER DEHYDROGENASE/CYCLOHYDROLASE ENZYMES OR DOMAINS. PROBABLE BIFUNCTIONAL PROTEIN FOLD: METHYLENETETRAHYDROFOLATE DEHYDROGENASE + METHENYLTETRAHYDROFOLATE CYCLOHYDROLASE	InterProMatches:IPR000672, IPR000672; Molecular Function: catalytic activity (GO:0003824), Biological Process: folic acid and derivative biosynthesis (GO:0009396), Molecular Function: catalytic activity (GO:0003824), Biological Process: folic acid and derivative biosynthesis (GO:0009396) methylenetetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclohydrolase	Bifunctional protein folD	Bifunctional protein folD	Similar to Methylobacterium sp. bifunctional protein [includes: methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)], FolD SWALL:Q9X7F6 (EMBL:AJ011316) (306 aa) fasta scores: E(): 5.1e-43, 46.8% id in 282 aa, and to Chlamydia muridarum fold bifunctional protein [includes: methylenetetrahydrofolate dehydrogenase FolD or tc0350 SWALL:FOLD_CHLMU (SWALL:Q9PKW1) (287 aa) fasta scores: E(): 4.7e-77, 67.83% id in 286 aa putative hydrolase	Bifunctional protein folD	similar to BRA0781, FolD bifunctional protein FolD bifunctional protein	Bifunctional protein folD	Bifunctional protein folD	FolD bifunctional protein	FolD bifunctional protein	identified by match to PFAM protein family HMM PF00763 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	Ortholog of S. aureus MRSA252 (BX571856) SAR1037 FolD bifunctional protein [includes: methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase]	FolD bifunctional protein	NECESSARY FOR THE BIOSYNTHESIS OF PURINES, THYMYDYLATE, METHIONINE, HISTIDINE, PANTOTHENATE, AND FORMYL TRNA-MET.  Citation: Mortl et al. (1991) J. Biol. Chem.  266:23953-23958 putuative bifunctional Methylenetetrahydrofolate dehydrogenase Methenyltetrahydrofolate/cyclohydrolase	identified by match to protein family HMM PF00763; match to protein family HMM PF02882 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	
CHLTR00081	Putative uncharacterized protein	cell division related rod shape-determining membrane protein	hypothetical membrane associated protein	Putative integral membrane protein	Putative integral membrane protein	Putative integral membrane protein	
CHLTR00082	Late transcription unit B protein	late transcription unit B protein	late transcription unit B protein	Late transcription unit B protein	Late transcription unit B protein	Late transcription unit B protein	
CHLTR00084	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00085	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00086	Phopholipase D Superfamily	phospholipase D	phosphatidylcholine-hydrolyzing phospholipase D (PLD) family	Phospholipase D/Transphosphatidylase	phospholipase D/Transphosphatidylase PFAM: phospholipase D/Transphosphatidylase KEGG: rrs:RoseRS_3593 phospholipase D/transphosphatidylase	Phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein precursor	Phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein precursor	Phospholipase D/Transphosphatidylase precursor	Phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein	Phopholipase domain protein	
CHLTR00087	Uncharacterized protein CT_085	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	conserved gene oxidoreductase, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	Highly similar to 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases hypothetical protein	identified by similarity to SP:P26615; match to protein family HMM PF01977; match to protein family HMM TIGR00148 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative	3-polyprenyl-4-hydroxybenzoate decarboxylase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	Similar to Thermoplasma volcanium hypothetical protein tv0410 or tvg0397730 SWALL:Q97BP5 (EMBL:AP000992) (481 aa) fasta scores: E(): 2.5e-58, 36.12% id in 454 aa, and to Bacillus halodurans hypothetical protein Bh3930 bh3930 SWALL:Q9K605 (EMBL:AP001520) (610 aa) fasta scores: E(): 5.2e-52, 36.85% id in 559 aa conserved hypothetical protein	Putative uncharacterized protein yigC	Hypothetical protein JHP0985	3-polyprenyl-4-hydroxybenzoate decarboxylase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-polyprenyl-4-hydroxybenzoate decarboxylase	polyprenyl P-hydroxybenzoate decarboxylase 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	ortholog to Escherichia coli bnum: b3843; MultiFun: Metabolism 1.3.6, 1.5.3.11 3-octaprenyl-4-hydroxybenzoate decarboxylase	identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	Carboxylyase-related protein	UbiD family decarboxylases	Carboxylyase-related protein	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 9658014, 11029449; Product type e : enzyme 3-octaprenyl-4-hydroxybenzoate carboxylyase; ubiquinone biosynthesis, third step	Carboxylyase-related protein	conserved hypothetical protein	3-octaprenyl-4hydroxybenzoate decarboxylase	Carboxylyase-like protein	oxidoreductase	Carboxylyase-related protein	UbiD family decarboxylases	
CHLTR00088	50S ribosomal protein L28	50S ribosomal protein L28	50S ribosomal protein L28	50S ribosomal protein L28	50S ribosomal protein L28	50S ribosomal protein L28	conserved gene 50S ribosomal protein L28	50S ribosomal protein L28	50S ribosomal protein L28	50S ribosomal protein L28	50S ribosomal protein L28	50S ribosomal subunit protein L28	similar to Salmonella typhi CT18 50S ribosomal subunit protein L28 50S ribosomal subunit protein L28	Similar to Borrelia burgdorferi 50s ribosomal protein l28 RpmB or bb0350 SWALL:RL28_BORBU (SWALL:O51325) (92 aa) fasta scores: E(): 6.3e-09, 37.93% id in 87 aa and Neisseria meningitidis 50s ribosomal protein l28 RpmB or Nmb0321 SWALL:RL28_NEIMA (SWALL:Q9JQQ3) (77 aa) fasta scores: E(): 8.5e-05, 35.55% id in 90 aa 50s ribosomal protein l28	50S ribosomal protein L28	50S ribosomal protein L28	50S ribosomal protein L28	50S ribosomal protein L28	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type s : structure 50S ribosomal protein L28	50S ribosomal protein L28	LSU ribosomal protein L28P	Similar to: HI0951, RL28_HAEIN 50S ribosomal protein L28	Ribosomal protein L28 RpmB protein	50S ribosomal protein L28	Similar to AAP19069 (RL28_ECOLI) 50S ribosomal subunit protein L28 from E. coli (78 aa). FASTA: opt: 417 Z-score: 594.8 E(): 2.8e-25 Smith-Waterman score: 417; 77.922 identity in 77 aa overlap 50S ribosomal protein L28	Ribosomal protein L28	50S ribosomal protein L28	50S ribosomal protein L28	50S ribosomal protein L28	
CHLTR00089	4-alpha-glucanotransferase	4-alpha-glucanotransferase	4-alpha-glucanotransferase	Similar to Clostridium butyricum 4-alpha-glucanotransferase MalQ SWALL:MALQ_CLOBU (SWALL:Q59266) (487 aa) fasta scores: E(): 2.2e-19, 25.62% id in 484 aa and to Streptococcus pneumoniae, and Streptococcus pneumoniae 4-alpha-glucanotransferase MalQ or malm or sp2107 or spr1917 SWALL:MALQ_STRPN (SWALL:P29851) (505 aa) fasta scores: E(): 5e-23, 26.58% id in 504 aa 4-alpha-glucanotransferase	4-alpha-glucanotransferase	4-alpha-glucanotransferase	4-alpha-glucanotransferase MalQ protein	4-alpha-glucanotransferase	glycoside hydrolase, family 77	amylomaltase; Code: G; COG: COG1640 4-alpha-glucanotransferase	4-alpha-glucanotransferase	4-alpha-glucanotransferase	Citation: Takaha,T., Yanase,M., Okada,S., Smith,S.M., (1993) J. Biol. Chem. 268:1391-1396 putative 4-alpha-glucanotransferase	amylomaltase; Code: G; COG: COG1640 4-alpha-glucanotransferase	4-alpha-glucanotransferase identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217	Glycoside hydrolase, family 77	4-alpha-glucanotransferase identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217	4-alpha-glucanotransferase identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217	amylomaltase; Code: G; COG: COG1640 4-alpha-glucanotransferase	putative 4-alpha-glucanotransferase Codons 75 to the C-terminus are similar to codons 135 to the C-terminus of Escherichia coli 4-alpha-glucanotransferase malQ SWALL:MALQ_ECOLI (SWALL:P15977) (694 aa), and codons 70 to the C-terminus to Erwinia carotovora 4-alpha-glucanotransferase malQ SWALL:Q6CZL6 (EMBL:BX950851) (691 aa) similarity:fasta; SWALL:MALQ_ECOLI (SWALL:P15977); Escherichia coli; 4-alpha-glucanotransferase; malQ; length 694 aa; id=39.06; ungapped id=40.59; E()=1.7e-70; 558 aa overlap; query 75-618 aa; subject 137-687 aa similarity:fasta; SWALL:Q6CZL6 (EMBL:BX950851); Erwinia carotovora; 4-alpha-glucanotransferase; malQ; length 691 aa; id=39.2; ungapped id=40.37; E()=2.6e-73; 551 aa overlap; query 71-608 aa; subject 125-672 aa	4-alpha-glucanotransferase KEGG: ttj:TTHA1261 4-alpha-glucanotransferase (amylomaltase) (disproportionating enzyme) (D-enzyme), ev=1e-159, 55% identity TIGRFAM: 4-alpha-glucanotransferase: (4.9e-109) PFAM: glycoside hydrolase, family 77: (7.7e-217)	4-alpha-glucanotransferase EC 2.4.1.25	4-alpha-glucanotransferase	4-alpha-glucanotransferase	4-alpha-glucanotransferase	4-alpha-glucanotransferase	4-alpha-glucanotransferase (amylomaltase) protein Similar to malQ (YPO0126) [Yersinia pestis] and 4-alpha-glucanotransferase [Escherichia coli CFT073] Similar to swissprot:Q8ZJI1 Putative location:bacterial cytoplasm Psort-Score: 0.5188; go_function: transferase activity, transferring glycosyl groups [goid 0016757]; go_function: 4-alpha-glucanotransferase activity [goid 0004134]; go_function: transferase activity [goid 0016740]; go_process: carbohydrate metabolism [goid 0005975]	4-alpha-glucanotransferase KEGG: syf:Synpcc7942_1019 4-alpha-glucanotransferase TIGRFAM: 4-alpha-glucanotransferase PFAM: glycoside hydrolase, family 77	4-alpha-glucanotransferase precursor	
CHLTR00090	Secretion Chaperone	chaperone for secretion	secretion chaperone	Type III secretion chaperone	Type III secretion chaperone	Type III secretion chaperone	
CHLTR00091	Low Calcium Response E	low calcium response protein E	putative outer protein N	low calcium response protein E type III secreted protein SCTW	Low calcium response protein E	Low calcium response protein E	Low calcium response protein E	Type III secretion regulator YopN/LcrE/InvE/MxiC	
CHLTR00092	Low Calcium Response D	Hypersensitivity response secretion protein hrcV	Type III secretion protein SctV	Type III secretion system EscV protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark HrcV	Similar to Yersinia enterocolitica low calcium response locus protein D LcrD SWALL:LCRD_YEREN (SWALL:P21210) (704 aa) fasta scores: E(): 7.2e-118, 46.23% id in 703 aa and to Yersinia pestis, and Yersinia pseudotuberculosis low calcium response locus protein D LcrD or ypcd1.34c or y5044 or y0047 SWALL:LCRD_YERPE (SWALL:P31487) (704 aa) fasta scores: E(): 2.8e-117, 46.23% id in 703 aa putative membrane transport protein	Low calcium response locus protein D	HrcV protein	Type III secretion protein HrcV	type III secretory flagellar biosynthesis	Type III secretion FHIPEP precursor	HrcV protein	SctV identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399	membrane-bound Yop protein	putative type III secretion pore protein	HrcV protein HrcV protein (HrpC2 protein) identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	type III secretion protein, HrcV family TIGRFAM: type III secretion protein, HrcV family PFAM: type III secretion FHIPEP protein KEGG: bma:BMAA1630 type III secretion inner membrane protein SctV	type III secretion FHIPEP protein PFAM: type III secretion FHIPEP protein KEGG: bcn:Bcen_3510 type III secretion FHIPEP	Putative membrane low calcium response protein, LcrD, Type III secretion	type III secretion inner membrane protein SctV identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399	type III secretion protein LcrD/AscV identified by similarity to GB:AAA27643.1; similarity to GB:CAD30218.1; match to protein family HMM PF00771; match to protein family HMM TIGR01399	low calcium response protein D type III secretion inner membrane protein SCTV	Low calcium response locus membrane protein d	AscV protein	type III secretory apparatus protein PcrD	Type III secretion protein, HrcV family	Membrane-bound Yop protein	type III secretion FHIPEP PFAM: type III secretion FHIPEP KEGG: yps:pYV0060 putative membrane-bound Yop protein	Type III secretion protein, HrcV family	
CHLTR00093	Yop proteins translocation protein U	Type III secretion component protein SctU	Type III secretion system EscU protein	similar to YscU of the secretion system of Yersini; IPR006135: Type III secretion exporter Secretion system apparatus SsaU	similar to Salmonella typhi CT18 putative type III secretion protein putative type III secretion protein	Similar to Bacillus subtilis flagellar biosynthetic protein FlhB SWALL:FLHB_BACSU (SWALL:P35538) (360 aa) fasta scores: E(): 1.1e-30, 32.85% id in 350 aa, Chlamydophila caviae hypothetical protein SWALL:O34018 (EMBL:U88070) (360 aa) fasta scores: E(): 5.5e-126, 96.11% id in 360 aa and Yersinia pestis, and Yersinia pseudotuberculosis yop proteins translocation protein U YscU or ypcd1.47 or y5031 or y0034 SWALL:YSCU_YERPE (SWALL:P40300) (354 aa) fasta scores: E(): 3e-32, 32.76% id in 354 aa putative membrane transport protein	HrcU protein	Yop proteins translocation protein U	Secretion system apparatus protein ssaU	HrcU protein	identified by match to protein family HMM PF01312 type III secretion component, putative	type III secretion apparatus SpaS	type III secretory flagellar biosynthesis Yop translocation protein U	Type III secretion exporter	HrcU protein	Type III secretion exporter	type III secretion protein	HrcU protein HrcU protein (HrpC1 protein) identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	type III secretion exporter PFAM: type III secretion exporter KEGG: bbr:BB1635 putative type III secretion protein	Type III secretion apparatus protein	type III secretion exporter PFAM: type III secretion exporter KEGG: bcn:Bcen_3522 type III secretion exporter	type III secretion inner membrane protein identified by match to protein family HMM PF01312; match to protein family HMM TIGR01404	SctU type III secretion inner membrane protein	Putative type III secretion protein	AscU protein	Type III secretion protein, YscU/HrpY family	Type III secretion exporter	Type III secretion inner membrane protein	Putative uncharacterized protein	

CHLTR00094	GTP Binding Protein	Putative uncharacterized protein	Putative GTP-binding protein	YchF protein	GTP-binding protein	GTP-binding protein	Putative gtp-binding protein	Similar to probable GTP-binding protein YchF of Escherichia coli	Similar to GTP-binding protein hypothetical protein	conserved gene GTP binding protein	Similar to GTP-binding protein hypothetical protein	GTP-binding protein	identified by match to protein family HMM TIGR00092 conserved hypothetical protein TIGR00092	GTP-binding protein	probable translation factor GTP-binding protein	probable GTP binding protein	identified by match to protein family HMM PF06071; match to protein family HMM TIGR00092 GTP-binding protein YchF	Putative uncharacterized protein	GTP-binding protein	GTP-binding protein	GTP-binding protein	GTP-BINDING PROTEIN	Predicted GTPase, probable translation factor	identified by match to protein family HMM TIGR00092 GTP-binding protein YchF	Putative uncharacterized protein	GTP-binding protein	GTP-binding protein	Mb1142, -, len: 357 aa. Equivalent to Rv1112, len: 357 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 357 aa overlap). Probable GTP binding protein, similar to YCHF_HAEIN|P44681 probable gtp-binding protein (362 aa), FASTA scores: opt: 1189, E(): 0, (52.7% identity in 357 aa overlap). Equivalent to AL049491|MLCB1222_1 hypothetical protein from Mycobacterium leprae (356 aa) (85.9% identity in 354 aa overlap). Contains PS00017 ATP/GTP-binding site motif A (P-loop). Probable GTP binding protein	GTP-binding protein; Molecular Function: GTP binding (GO:0005525) GTP-dependent nucleic acid-binding protein EngD	
CHLTR00095	Riboflavin kinase/FAD Synthase	Cytidylyltransferase:Riboflavin kinase , FAD synthetase	Riboflavin kinase , FAD synthase	RibF protein	Probable riboflavin biosynthesis protein	Riboflavin kinase/FMN adenylyltransferase	Riboflavin biosynthesis protein RibF (Riboflavin kinase/FMN adenylyltransferase)	conserved gene riboflavin biosynthesis RibF	Riboflavin biosynthesis protein RibF (Riboflavin kinase/FMN adenylyltransferase)	Bifunctional protein: riboflavin kinase; FMN adenylyltransferase	identified by similarity to SP:P54575; match to protein family HMM PF01687; match to protein family HMM TIGR00083 riboflavin biosynthesis protein RibF	Riboflavin kinase/FAD synthetase	FMN adenylyltransferase Riboflavin kinase	hypothetical protein	identified by similarity to SP:P73651; match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083 riboflavin biosynthesis protein RibF	Riboflavin kinase	riboflavin kinase / FMN adenylyltransferase	Riboflavin biosynthesis protein	Riboflavin kinase	FAD synthase	identified by match to protein family HMM PF01687 riboflavin biosynthesis protein RibF, putative	RibF	Riboflavin biosynthesis protein RibF	Putative uncharacterized protein	Mb2809c, ribF, len: 331 aa. Equivalent to Rv2786c, len: 331 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 331 aa overlap). Probable ribF, FAD synthetase/riboflavin biosynthesis protein, bifunctional enzyme (EC 2.7.1.26; 2.7.7.2), equivalent to O32968|RIBF|ML0852 RIBOFLAVIN KINASE from Mycobacterium leprae (331 aa), FASTA scores: opt: 1923, E(): 2.3e-115, (87.45% identity in 327 aa overlap). Also highly similar to many e.g. Q59263|RIBF_CORAM from Corynebacterium ammoniagenes (Brevibacterium ammoniagenes) (338 aa), FASTA scores: opt: 899, E(): 5.7e-50, (45.8% identity in 321 aa overlap); Q9Z530|SC9F2.05c from Streptomyces coelicolor (318 aa), FASTA scores: opt: 862, E(): 1.3e-47, (52.45% identity in 324 aa overlap); P08391|RIBF_ECOLI|B0025|Z0029ECS0028 from Escherichia coli strains K12 and O157:H7 (313 aa), FASTA scores: opt: 517, E(): 1.3e-25, (36.05% identity in 305 aa overlap); etc. PROBABLE BIFUNCTIONAL FAD SYNTHETASE/RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBF: RIBOFLAVIN KINASE (FLAVOKINASE) + FMN ADENYLYLTRANSFERASE (FAD PYROPHOSPHORYLASE) (FAD SYNTHETASE)(FAD DIPHOSPHORYLASE) (FLAVIN ADENINE DINUCLEOTUDE SYNTHETASE)	InterProMatches:IPR002606; Molecular Function: riboflavin kinase activity (GO:0008531), Biological Process: vitamin B2 biosynthesis (GO:0009231) riboflavin kinase and FAD synthase	Includes: riboflavin kinase; FMN adenylyltransferase riboflavin biosynthesis protein RibC	Riboflavin biosynthesis protein RibF	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark riboflavin biosynthesis protein	
CHLTR00096	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	conserved gene tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431 tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431 tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	identified by similarity to SP:Q9WZW0; match to protein family HMM PF01509; match to protein family HMM TIGR00431 tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	Mb2816c, truB, len: 298 aa. Equivalent to Rv2793c, len: 298 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 298 aa overlap). Probable truB, tRNA pseudouridine synthase (EC 4.2.1.70), equivalent to Q9Z5I4|TRUB_MYCLE|ML1546 OR MLCB596.24 TRNA PSEUDOURIDINE SYNTHASE B from Mycobacterium leprae (320 aa), FASTA scores: opt: 1403, E(): 2.9e-83, (74.05% identity in 293 aa overlap). Also highly similar to many e.g.  Q9Z528|TRUB_STRCO|SC9F2.07c from Streptomyces coelicolor (301 aa), FASTA scores: opt: 870, E(): 7.6e-49, (50.7% identity in 296 aa overlap); P09171|TRUB_ECOLI|P35|B3166|Z4527|ECS4047 from Escherichia coli strains K12 and O157:H7 (314 aa), FASTA scores: opt: 574, E(): 1e-29, (42.5% identity in 214 aa overlap); Q9PGR1|TRUB_XYLFA|XF0237 from Xylella fastidiosa (302 aa), FASTA scores: opt: 569, E(): 2.1e-29, (41.05% identity in 285 aa overlap); etc. BELONGS TO THE TRUB FAMILY OF PSEUDOURIDINE SYNTHASES. PROBABLE TRNA PSEUDOURIDINE SYNTHASE B TRUB (TRNA PSEUDOURIDINE 55 SYNTHASE) (PSI55 SYNTHASE) (PSEUDOURIDYLATE SYNTHASE) (URACIL HYDROLYASE)	InterProMatches:IPR004510; Molecular Function: pseudouridylate synthase activity (GO:0004730), Biological Process: tRNA processing (GO:0008033) tRNA pseudouridine 55 synthase	tRNA pseudouridine synthase B	
CHLTR00097	Ribosome-binding factor A	identified by similarity to EGAD:9902; match to protein family HMM PF02033; match to protein family HMM TIGR00082 ribosome-binding factor A	ribosome binding factor A	Ribosome-binding factor A	Ribosome-binding factor A	InterProMatches:IPR000238; Biological Process: rRNA processing (GO:0006364) ribosome-binding factor A	ribosome-binding factor A	Similar to Clostridium tetani ribosome-binding factor a RbfA or ctc01276 SWALL:RBFA_CLOTE (SWALL:Q895J7) (121 aa) fasta scores: E(): 2.1e-09, 37.16% id in 113 aa and to Clostridium perfringens ribosome-binding factor a RbfA or cpe1685 SWALL:RBFA_CLOPE (SWALL:Q8XJR9) (116 aa) fasta scores: E(): 7.2e-08, 33.91% id in 115 aa ribosome-binding factor A	ribosome-binding factor A (P15B PROTEIN)	Ortholog of S. aureus MRSA252 (BX571856) SAR1246 putative ribosome-binding factor A	ribosome-binding factor A (P15B PROTEIN)	Ribosome-binding factor A	identified by similarity to SP:P32731; match to protein family HMM PF02033; match to protein family HMM TIGR00082 ribosome-binding factor A	Ribosome-binding factor A	ribosome-binding factor A	ribosome-binding factor A	identified by match to protein family HMM PF02033; match to protein family HMM TIGR00082 ribosome-binding factor A	identified by similarity to SP:P09170; match to protein family HMM PF02033; match to protein family HMM TIGR00082 ribosome-binding factor A	identified by match to protein family HMM PF02033; match to protein family HMM TIGR00082 ribosome-binding factor A	Ribosome-binding factor A	Similar to Escherichia coli ribosome-binding factor A RbfA SW:RBFA_ECOLI (P09170) (132 aa) fasta scores: E(): 1.8e-12, 42.609% id in 115 aa, and to Bacillus subtilis ribosome-binding factor A RbfA SW:RBFA_BACSU (P32731) (117 aa) fasta scores: E(): 1.1e-23, 60.714% id in 112 aa putative ribosome-binding factor A	ribosome-binding factor A	Ribosome-binding factor A	ribosome-binding factor A	identified by similarity to EGAD:9902; match to protein family HMM PF02033; match to protein family HMM TIGR00082 ribosome-binding factor A	similar to gi|27467865|ref|NP_764502.1| [Staphylococcus epidermidis ATCC 12228], percent identity 84 in 113 aa, BLASTP E(): 5e-48 ribosome-binding factor A	identified by similarity to SP:P32731; match to protein family HMM PF02033; match to protein family HMM TIGR00082 ribosome-binding factor A	Ribosome-binding factor A	Ribosome-binding factor A	
CHLTR00098	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	protein synthesis initiation factor 2	Translation initiation factor IF-2	Translation initiation factor IF-2	conserved gene initiation factor IF2-beta (IF-2 gamma, IF-2 alpha)	Translation initiation factor IF-2	Translation initiation factor IF-2	identified by similarity to SP:P17889; match to protein family HMM PF00009; match to protein family HMM PF02131; match to protein family HMM PF03144; match to protein family HMM PF04760; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487 translation initiation factor IF-2	Translation initiation factor IF-2	identified by similarity to SP:P02995; match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF04760; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487 translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	identified by similarity to SP:P17889; match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF04760; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487 translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Mb2864c, infB, len: 900 aa. Equivalent to Rv2839c, len: 900 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 900 aa overlap). Probable infB, translation initiation factor IF-2, highly similar, but in part, to Q9Z5I9|IF2_MYCLE|ML1556|MLCB596.14 TRANSLATION INITIATION FACTOR IF-2 from Mycobacterium leprae (924 aa), FASTA scores: opt: 4548, E(): 2.4e-132, (83.6% identity in 933 aa overlap). Also similar in part to others e.g.  Q9K3E2|SC5H4.30 from Streptomyces coelicolor (835 aa), FASTA scores: opt: 2559, E(): 1.3e-71, (59.9% identity in 833 aa overlap); P17889|IF2_BACSU|INFB from Bacillus subtilis (716 aa), FASTA scores: opt: 1782, E(): 6.6e-48, (46.65% identity in 686 aa overlap); P02995|IF2_ECOLI|INFB|SSYG|B3168|Z4529|ECS4049 from Escherichia coli strains O157:H7 and K12 (890 aa), FASTA scores: opt: 1708, E(): 1.3e-45, (46.2% identity in 662 aa overlap); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE IF-2 FAMILY. PROBABLE TRANSLATION INITIATION FACTOR IF-2 INFB	InterProMatches:IPR005225, IPR000178; Molecular Function: GTP binding (GO:0005525), Molecular Function: translation initiation factor activity (GO:0003743), Molecular Function: GTP binding (GO:0005525), Biological Process: translational initiation (GO:0006413) initiation factor IF-2	translation initiation factor IF-2	Translation initiation factor IF-2	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark protein chain initiation factor IF-2	translation initiation factor IF-2	Translation initiation factor IF-2	IPR000178: Initiation factor 2; IPR000795: Elongation factor, GTP-binding; IPR004161: Elongation factor Tu, domain 2;IPR005225: Small GTP-binding protein domain;IPR006847: Translation initiation factor IF-2, N-terminal protein chain initiation factor IF-2	
CHLTR00099	Transcription antitermination factor	S1 RNA binding domain:KH domain:Type 1 KH domain	Transcription termination-antitermination factor	NusA protein	NusA-homolog	Probable n utilization substance transcription regulator protein	N utilization substance protein A	Transcription elongation protein nusA	conserved gene N utilization substance protein A	Transcription elongation protein nusA	Transcription termination-antitermination factor NusA	identified by similarity to EGAD:10045; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM TIGR01953 N utilization substance protein A, putative	N-utilization substance protein a	N utilization substance protein A	transcription termination-antitermination factor N utilization substance protein A	identified by match to protein family HMM PF00013; match to protein family HMM TIGR01953; match to protein family HMM TIGR01954 transcription termination factor NusA	N utilization substance transcription regulator protein	transcription termination-antitermination factor	N utilization substance protein A	Transcription termination-antitermination factor	Transcription elongation factor NusA	identified by match to protein family HMM PF00013; match to protein family HMM TIGR01953 transcription termination factor NusA	NusA	N-utilization substance protein A	Transcription elongation protein nusA	Mb2866c, nusA, len: 347 aa. Equivalent to Rv2841c, len: 347 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 347 aa overlap). Probable nusA, N-utilization substance protein A, equivalent to Q9Z5J1|NUSA|ML1558 PROBABLE TRANSCRIPTION TERMINATION/ANTITERMINATION FACTOR from Mycobacterium leprae (347 aa), FASTA scores: opt: 2054, E(): 5.4e-120, (91.95% identity in 347 aa overlap). Also highly similar to others e.g. Q9KYR1|SC5H4.28 PUTATIVE TRANSCRIPTIONAL TERMINATION/ANTITERMINATION FACTOR from Streptomyces coelicolor (340 aa), FASTA scores: opt: 1346, E(): 4.3e-76, (63.35% identity in 341 aa overlap); P32727|NUSA_BACSU N UTILIZATION SUBSTANCE PROTEIN A (371 aa), FASTA scores: opt: 847, E(): 4.1e-45, (43.95% identity in 346 aa overlap); Q9KA74|NUSA|BH2416 TRANSCRIPTIONAL TERMINATOR from Bacillus halodurans (382 aa), FASTA scores: opt: 846, E(): 4.8e-45, (43.15% identity in 373 aa overlap); etc. BELONGS TO THE NUSA FAMILY. PROBABLE N UTILIZATION SUBSTANCE PROTEIN A NUSA	InterProMatches:IPR010213; transcription termination NusA	transcriptional elongation protein	Transcription pausing; L factor	
CHLTR00100	30S ribosomal protein S1	Ribosomal protein S1:S1 RNA binding domain	RpsA protein	Probable 30s ribosomal subunit protein s1	30S ribosomal protein S1	30S ribosomal protein S1	conserved gene 30S ribosomal protein S1	30S ribosomal protein S1	SSU ribosomal protein S1P	identified by similarity to SP:P02349; match to protein family HMM PF00575; match to protein family HMM TIGR00717 ribosomal protein S1	30S ribosomal protein S1	30S ribosomal protein S1	identified by similarity to SP:P02349; match to protein family HMM PF00575 ribosomal protein S1	Ribosomal protein S1	30S ribosomal protein S1	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 30S ribosomal protein S1	30S ribosomal protein S1	IPR000110: Ribosomal protein S1; IPR003029: RNA binding S1 30S ribosomal subunit protein S1	Ribosomal protein S1	similar to Salmonella typhi CT18 30S ribosomal protein S1 30S ribosomal protein S1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 30s ribosomal protein S1 RpsA SWALL:RS1_ECOLI (SWALL:P02349) (557 aa) fasta scores: E(): 1.7e-83, 45.16% id in 527 aa and to Chlorobium tepidum ribosomal protein S1 RpsA SWALL:AAM71534 (EMBL:AE012807) (550 aa) fasta scores: E(): 9.4e-89, 45.64% id in 517 aa 30s ribosomal protein S1	Ribosomal protein S1	similar to BR0027, ribosomal protein S1 RpsA, ribosomal protein S1	Putative uncharacterized protein gbs1225	30S ribosomal protein S1	30s ribosomal protein s1	30S ribosomal protein S1	identified by match to PFAM protein family HMM PF00575 ribosomal protein S1	30S ribosomal protein S1	
CHLTR00101	Thioredoxin reductase	Thioredoxin reductase	thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	conserved gene thioredoxin reductase	Thioredoxin reductase	thioredoxin reductase	identified by match to protein family HMM PF00070; match to protein family HMM TIGR01292 thioredoxin-disulfide reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Mb3944, trxB2, len: 335 aa. Equivalent to Rv3913, len: 335 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 335 aa overlap). Probable trxB2, thioredoxin reductase (EC 1.6.4.5) (see citation below), equivalent to O30973|TRXB_MYCSM THIOREDOXIN REDUCTASE from Mycobacterium smegmatis (311 aa), FASTA scores: opt: 1575, E(): 1.8e-87, (78.35% identity in 305 aa overlap); and highly similar, but shorter at C-terminus, to P46843|TRXB_MYCLE|TRXB/A|TRX|ML2703 BIFUNCTIONAL THIOREDOXIN REDUCTASE/THIOREDOXIN from Mycobacterium leprae (458 aa), FASTA scores: opt: 1766, E(): 8.7e-99, (83.25% identity in 328 aa overlap). Also highly similar to many e.g. P52215|TRXB_STRCO|SCH24.12 from Streptomyces coelicolor (321 aa), FASTA scores: opt: 1249, E(): 7.2e-68, (60.4% identity in 313 aa overlap); Q9Z8M4|TRXB_CHLPN from Chlamydia pneumoniae (Chlamydophila pneumoniae) (311 aa), FASTA scores: opt: 978, E(): 1.3e-51, (49.85% identity in 307 aa overlap); P09625|TRXB_ECOLI|B0888 from Escherichia coli strain K12 (320 aa), FASTA scores: opt: 948, E(): 8.6e-50, (49.2% identity in 309 aa overlap); etc. Contains PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. BELONGS TO THE PYRIDINE NUCLEOTIDE-DISULFIDE OXIDOREDUCTASES CLASS-II. COFACTOR: FAD (BY SIMILARITY). PROBABLE THIOREDOXIN REDUCTASE TRXB2 (TRXR) (TR)	Thioredoxin reductase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark thioredoxin reductase	Thioredoxin reductase	IPR000103: Pyridine nucleotide-disulphide oxidoreductase, class-II; IPR000759: Adrenodoxin reductase; IPR001100: Pyridine nucleotide-disulphide oxidoreductase, class I;IPR001327: FAD-dependent pyridine nucleotide-disulphide oxidoreductase;IPR008255: Pyridine nucleotide-disulphide oxidoreductase, class-II, active site thioredoxin reductase	Thioredoxin reductase	similar to Salmonella typhi CT18 thioredoxin reductase thioredoxin reductase	Similar to Prokaryotic and Eukaryotic thioredoxins including: Mycobacterium smegmatis thioredoxin reductase TrxB SWALL:TRXB_MYCSM (SWALL:O30973) (311 aa) fasta scores: E(): 2.4e-54, 50.64% id in 310 aa, and to Arabidopsis thaliana thioredoxin reductase 2 Ntr2 or at2g17420 or f5j6.18 SWALL:TRB2_ARATH (SWALL:Q39242) (383 aa) fasta scores: E(): 4.5e-69, 57.82% id in 313 aa thioredoxin reductase	Thioredoxin reductase	similar to BR1499, thioredoxin reductase TrxB, thioredoxin reductase	
CHLTR00102	Holo-[acyl-carrier-protein] synthase	Holo-[acyl-carrier-protein] synthase	Holo-[acyl-carrier-protein] synthase	Holo-[acyl-carrier-protein] synthase	Holo-[acyl-carrier-protein] synthase	Holo-[acyl-carrier-protein] synthase	identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556 holo-(acyl-carrier-protein) synthase	Holo-[acyl-carrier protein] synthase	Holo-[acyl-carrier-protein] synthase	holo-(acyl carrier protein) synthase	Holo-[acyl-carrier-protein] synthase	identified by similarity to SP:P24224; match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556 holo-(acyl-carrier-protein) synthase	holo-[acyl-carrier protein] synthase	Holo-[acyl-carrier-protein] synthase	Holo-[acyl-carrier-protein] synthase	Holo-[acyl-carrier-protein] synthase	IPR002582: Holo-acyl carrier protein synthase holo-[acyl-carrier-protein] synthase, subunit (CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase, phosphopanthetheinyltransferase)	Phosphopantetheinyl transferase (holo-ACP synthase)	similar to Salmonella typhi CT18 holo-[acyl-carrier protein] synthase holo-[acyl-carrier protein] synthase	Similar to many including: Escherichia coli holo-[acyl-carrier protein] synthase AcpS or SWALL:ACPS_ECOLI (SWALL:P24224) (125 aa) fasta scores: E(): 6e-06, 32.23% id in 121 aa and Clostridium perfringens holo-[acyl-carrier protein] synthase AcpS or cpe0291 SWALL:ACPS_CLOPE (SWALL:Q8XNP1) (133 aa) fasta scores: E(): 1.6e-08, 43.2% id in 125 aa holo-[acyl-carrier protein] synthase	Putative holo-[acyl-carrier protein] synthase	Holo-[acyl-carrier-protein] synthase	holo-ACP synthase	Holo-[acyl-carrier-protein] synthase	identified by match to PFAM protein family HMM PF01648 holo-(acyl-carrier-protein) synthase	Holo-[acyl-carrier-protein] synthase	Holo-(Acyl-carrier protein) synthase	Ortholog of S. aureus MRSA252 (BX571856) SAR2159 holo-[acyl-carrier protein] synthase	holo-ACP synthase	
CHLTR00103	Putative uncharacterized protein	hypothetical protein	hypothetical membrane associated protein	Putative membrane protein precursor	Putative membrane protein precursor	Putative membrane protein	
CHLTR00104	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative membrane protein	Putative membrane protein	Putative membrane protein	
CHLTR00106	Enoyl-Acyl-Carrier Protein Reductase	FabI protein	Probable enoyl-[acyl-carrier-protein] reductase [nadh] oxidoreductase	similar to Enoyl-[acyl-carrier-protein] reductase hypothetical protein	conserved gene enoyl reductase	similar to Enoyl-[acyl-carrier-protein] reductase hypothetical protein	Enoyl-[acyl-carrier protein] reductase	enoyl-[acyl-carrier protein] reductase (NADH)	Enoyl-[acyl-carrier-protein] reductase	Enoyl-[acyl-carrier-protein] reductase	identified by similarity to SP:Q9ZFE4; match to protein family HMM PF00106 enoyl-(acyl-carrier-protein) reductase	InterProMatches:IPR002198, IPR002347; Biological Process: metabolism (GO:0008152), Molecular Function: oxidoreductase activity (GO:0016491) enoyl-acyl carrier protein reductase	enoyl-[acyl-carrier-protein] reductase [NADH]	Enoyl-[acyl carrier protein] reductase	NADH-dependent enoyl-ACP reductase	Enoyl-[acyl-carrier-protein] reductase (NADH)	Similar to several Prokaryotic and Eukaryotic reductases including: Chlamydia muridarum enoyl- tc0380 SWALL:Q9PKT2 (EMBL:AE002305) (298 aa) fasta scores: E(): 6.2e-96, 85.18% id in 297 aa and to Brassica napus enoyl-[acyl-carrier protein] reductase [NADH], chloroplast precursor SWALL:FABI_BRANA (SWALL:P80030) (385 aa) fasta scores: E(): 3.9e-71, 68.51% id in 289 aa. Note the N-terminal extension of the Eukaryotic orthologues putative short chain dehydrogenase	Enoyl-[acyl-carrier-protein] reductase	Enoyl-[acyl-carrier-protein] reductase	Enoyl-ACP reductase	enoyl-[acyl-carrier-protein] reductase	Similar to sp|Q9ZDG4|FABI_RICPR sp|P58380|FAI1_RHIME rc||fabI sp|P58381|FAI2_RHIME; Ortholog to ERGA_CDS_02870 Putative Enoyl-[acyl-carrier-protein] reductase [NADH]	identified by similarity to SP:P54616; match to protein family HMM PF00106 enoyl-(acyl-carrier-protein) reductase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme NADH-dependent enoyl-ACP reductase	COG0623 FabI enoyl-[acyl-carrier-protein] reductase (NADH) similar to NP_385004.1 enoyl-[acyl-carrier-protein] reductase	Enoyl-(Acyl-carrier-protein) reductase	NADH dependent; COG0623 enoyl-[acyl-carrier-protein] reductase	NADH-dependent enoyl-ACP reductase; Similar to: HI1734, FABI_HAEIN enoyl-[acyl-carrier-protein] reductase [NADH]	Similar to Q87YS1 Enoyl-(acyl-carrier-protein) reductase from Pseudomonas syringae (pv. tomato) (264 aa).  FASTA: opt: 1071 Z-score: 1313.1 E(): 3e-65 Smith-Waterman score: 1071; 62.595 identity in 262 aa overlap. Enoyl-[acyl-carrier-protein] reductase (NADH)	
CHLTR00105	HAD superfamily hydrolase/phosphatase	Similar to many proteins of undefined function including: Chlamydia pneumoniae HAD-superfamily hydrolase/phosphatase cpn0407 or cpj0407 or cp0348 SWALL:Q9Z8D6 (EMBL:AE001624) (295 aa) fasta scores: E(): 3.5e-69, 60.55% id in 289 aa and to Staphylococcus epidermidis conserved hypothetical protein se0329 SWALL:Q8CTS0 (EMBL:AE016745) (292 aa) fasta scores: E(): 0.0001, 21.35% id in 295 aa conserved hypothetical protein	identified by sequence similarity; putative; ORF located using Blastx; COG0561 conserved hypothetical protein	identified by sequence similarity; putative; ORF located using Blastx; COG0561 conserved hypothetical protein	hydrolase HAD superfamily	HAD superfamily hydrolase/phosphatase	Putative uncharacterized protein	Putative uncharacterized protein	Cof-like hydrolase	Putative uncharacterized protein	HAD hydrolase, IIB family	
CHLTR00107	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00108	Pseudouridine synthase	Pseudouridine synthase	Pseudouridine synthase	Pseudouridine synthase	Pseudouridine synthase	Ribosomal large subunit pseudouridine synthase	conserved gene ribosomal large subunit (23S rRNA) pseudouridine synthase C	Ribosomal large subunit pseudouridine synthase	Pseudouridylate synthase	Pseudouridine synthase	Pseudouridine synthase	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 ribosomal large subunit pseudouridine synthases, RluD subfamily	Pseudouridine synthase	RluD ribosomal large subunit pseudouridine synthase	IPR002942: RNA-binding S4; IPR006224: Pseudouridine synthase, Rlu 23S rRNA pseudouridylate synthase	similar to Salmonella typhi CT18 ribosomal large subunit pseudouridine synthase C ribosomal large subunit pseudouridine synthase C	Similar to Rickettsia prowazekii ribosomal large subunit pseudouridine synthase C RluC or rp258 SWALL:RLUC_RICPR (SWALL:Q9ZDR7) (303 aa) fasta scores: E(): 1.2e-15, 29.82% id in 285 aa and to Chlamydia trachomatis predicted pseudouridine synthetase family YceC or ct106 SWALL:O84108 (EMBL:AE001284) (303 aa) fasta scores: E(): 8.4e-71, 61.13% id in 265 aa ribosomal large subunit pseudouridine synthase C	Ribosomal pseudouridine synthase	conserved hypothetical protein	Hypothetical RNA pseudouridine synthase JHP0890	Ortholog of S. aureus MRSA252 (BX571856) SAR0975 putative RNA pseudouridylate synthase	conserved hypothetical protein	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme 23S rRNA pseudouridylate synthase	COG0564 RluA pseudouridylate synthases, 23S RNA-specific ribosomal large subunit pseudouridine synthase	Pseudouridine synthase	Putative Ribosomal large subunit pseudouridine synthase D	ribosomal large subunit pseudouridine synthase C	Ribosomal large subunit pseudouridine synthase C	Ribosomal large subunit pseudouridine synthase C	
CHLTR00109	A/G-specific Adenine Glycosylase	HhH-GPD	Similar to A/G-specific adenine glycosylase	Probable a/g-specific adenine glycosylase protein	A/G-specific adenine glycosylase	Similar to A/G-specific adenine glycosylase hypothetical protein	conserved gene A/G specific adenine glycosylase	Similar to A/G-specific adenine glycosylase hypothetical protein	A/G-specific adenine glycosylase	identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 A/G-specific adenine glycosylase	A/G-specific adenine DNA glycosylase	mutator MutT protein	identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 A/G-specific adenine glycosylase	A/G-specific DNA glycosylase	A/G-specific adenine glycosylase	A/G-specific adenine glycosylase	A/G-specific adenine glycosylase	A/G-specific DNA glycosylase	A/G-specific adenine glycosylase	Cellular Component: intracellular (GO:0005622), Biological Process: base-excision repair (GO:0006284), Molecular Function: DNA N-glycosylase activity (GO:0019104) putative A/G-specific adenine glycosylase YfhQ	A/G-specific adenine DNA glycosylase	A/G-specific adenine glycosylase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark A/G-specific adenine glycosylase	A/G-specific adenine glycosylase	IPR000445: Helix-hairpin-helix motif; IPR003265: HhH-GPD; IPR003651: Iron-sulfur cluster loop;IPR004035: Endonuclease III, FCL;IPR004036: Endonuclease III, HhH;IPR005760: A/G-specific adenine glycosylase MutY adenine DNA glycosylase	similar to Salmonella typhi CT18 A/G-specific adenine glycosylase A/G-specific adenine glycosylase	Weakly similar to Escherichia coli A/G-specific adenine glycosylase MutY or MicA or b2961 SWALL:MUTY_ECOLI (SWALL:P17802) (350 aa) fasta scores: E(): 1.5e-31, 31.09% id in 312 aa. Note all 4 iron-sulfur (4fe-4s) binding sites are conserved between these two orthologues. Also similar to Bacillus halodurans adenine glycosylase bh0931 SWALL:Q9KEC2 (EMBL:AP001510) (372 aa) fasta scores: E(): 2.4e-44, 36.74% id in 362 aa putative A/G-specific adenine glycosylase	similar to BR0493, A/G-specific adenine glycosylase MutY, A/G-specific adenine glycosylase	Putative uncharacterized protein gbs1760	
CHLTR00110	UPF0135 protein CT_108	Putative uncharacterized protein	NGG1p interacting factor 3 homolog	YbgI protein	UPF0135 protein RSc2931	Similar to unknown protein YbgI of Escherichia coli	Similar to conserved hypothetical protein hypothetical protein	conserved gene hypothetical TIGR00486	Similar to conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein TTHA1606	putative cytoplasmic protein	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Similar to Chlamydophila caviae hypothetical protein cca00640 SWALL:Q822N9 (EMBL:AE016996) (251 aa) fasta scores: E(): 3.3e-83, 79.28% id in 251 aa, and to Chlamydophila pneumoniae TW-183 YbgI or cpb0138 SWALL:AAP98071 (EMBL:AE017157) (251 aa) fasta scores: E(): 9.1e-70, 68.12% id in 251 aa, and to Chlamydia pneumoniae hypothetical protein cpn0137/cp0635/cpj0137 SWALL:Y137_CHLPN (SWALL:Q9Z946) (251 aa) fasta scores: E(): 9.1e-70, 68.12% id in 251 aa. Only significant full-length database matches are to Chlamydiaceae proteins. conserved hypothetical protein	Putative uncharacterized protein	Hypothetical protein	Hypothetical protein	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein	Putative uncharacterized protein	NIF3-related protein	Similar to: HI0105, YBGI_HAEIN conserved hypothetical NIF3-like protein	Uncharacterized ACR Hypothetical protein	Putative uncharacterized protein	Similar to Q8KTX3 Putative YbgI protein from Vibrio fischeri (251 aa). FASTA: opt: 818 Z-score: 1022.1 E(): 4.9e-49 Smith-Waterman score: 818; 53.112 identity in 241 aa overlap. Contains a frameshift after aa 140 ORF ftt0606c pseudo conserved hypothetical protein, pseudogene	NGG1p interacting factor 3-like protein; contains 3 distinct domains NIF3	UPF0135 protein bbp_279	UPF0135 protein ybgI	conserved hypothetical protein	identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 conserved hypothetical protein TIGR00486	
CHLTR00111	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00112	60 kDa chaperonin	60 kDa chaperonin	60kD chaperonin 1 of Synechococcus PCC7942 GroEL protein	identified by similarity to SP:P20110; match to protein family HMM PF00118 chaperonin, 60 kDa	heat shock protein, chaperonin, 60 kDa	identified by match to protein family HMM PF00118 co-chaperonin GroEL	60 kDa chaperonin	60 kDa chaperonin 2	Mb0448, groEL2, len: 540 aa. Equivalent to Rv0440, len: 540 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 540 aa overlap). groEL2 (alternate gene names: groL2, groEL-2, hsp65, hsp60), 60 kDa chaperonin 2 (see first citation below). PURIFIED 65 kDa ANTIGEN CAN ELICIT A STRONG DELAYED-TYPE HYPERSENSITIVITY REACTION IN EXPERIMENTAL ANIMALS INFECTED WITH M.  TUBERCULOSIS. THIS PROTEIN IS ONE OF THE MAJOR IMMUNOREACTIVE PROTEINS OF THE MYCOBACTERIA. THIS ANTIGEN CONTAINS EPITOPES THAT ARE COMMON TO VARIOUS SPECIES OF MYCOBACTERIA. Contains PS00296 Chaperonins cpn60 signature. BELONGS TO THE CHAPERONIN (HSP60) FAMILY. 60 KDA CHAPERONIN 2 GROEL2 (PROTEIN CPN60-2) (GROEL PROTEIN 2) (65 KDA ANTIGEN) (HEAT SHOCK PROTEIN 65) (CELL WALL PROTEIN A) (ANTIGEN A)	chaperonin GroEL	GroEL 60 kDa chaperonin protein Cpn60 (GroEL protein) chaperonin	60 kDa chaperonin	Chaperonin GroEL (HSP60 family)	Similar to Rhodothermus marinus 60 kDa chaperonin GroL or GroEL SWALL:CH60_RHOMR (SWALL:Q9XCA9) (540 aa) fasta scores: E(): 8.3e-122, 65.99% id in 544 aa, and to Bradyrhizobium japonicum 60 kDa chaperonin GroEL or BLR7533 SWALL:Q89DA6 (EMBL:AP005962) (543 aa) fasta scores: E(): 2.1e-119, 65.07% id in 544 aa. Note the paralogue of this CDS CAB949 60 kDa chaperonin	60 kDa chaperonin	60 kDa chaperonin	GroEL protein (Chaperonin cpn60)	Similar to sp|P48213|CH60_COWRU sp|P42382|CH60_EHRCH sp|O34191|CH60_ANAPH sp|O34194|CH60_EHRCA; Ortholog to ERGA_CDS_06640 60 kDa chaperonin (Protein Cpn60) (groEL protein)	identified by similarity to SP:P28598; match to protein family HMM PF00118 chaperone protein GroEL	COG0459 GroL chaperonin GroEL (HSP60 family ) 60 kD chaperonin	60 kDa chaperonin 1	Chaperonin GroEL	HSP60; COG0459 60 kDa chaperonin, GroEL	, predicted protein, len = 595 aa, chaperonin hsp60, mitochondrial precursor; predicted pI = 6.3744; very similarity to CH60_LEIMA, chaperonin hsp60, mitochondrial precursor in Leishmania major and O97130, chaperonin hsp60 in Leishmania donovani chaperonin Hsp60, mitochondrial precursor, putative	Similar to Bacteroides forsythus 60 kDa chaperonin GroL or GroEL or MopA SWALL:CH60_BACFO (SWALL:P81284) (543 aa) fasta scores: E(): 2.6e-141, 79.22% id in 544 aa, and to Porphyromonas gingivalis 60 kDa chaperonin GroL or GroEL or MopA or PG0520 SWALL:CH60_PORGI (SWALL:P42375) (545 aa) fasta scores: E(): 2.7e-142, 79.08% id in 545 aa 60 kDa chaperonin	Chaperonin GroEL (HSP60 family) GroL protein	Similar to CH60_FRATU (P94798) 60 kDa chaperonin (protein Cpn60) from Francisella tularensis ssp. holarctica strain LVS (544 aa). FASTA: opt: 3359 Z-score: 3417.9 E(): 1.6e-182 99.265 identity in 544 aa overlap Chaperone protein, groEL	Chaperonin GroEL (HSP60 family)	
CHLTR00113	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin (Protein Cpn10) (groES protein) (Heat shock protein A)	conserved gene Hsp10, 10 kDa chaperonin GroES	10 kDa chaperonin (Protein Cpn10) (groES protein) (Heat shock protein A)	10 kDa chaperonin	10 kDa chaperonin GROES	10 kD chaperonin of Synechococcus PCC7942 GroES protein	identified by similarity to SP:P25969; match to protein family HMM PF00166 chaperonin, 10 kDa	10 kDa chaperonin	chaperonin, 10 kDa	10 kDa chaperonin	10 kDa chaperonin	identified by similarity to SP:P48225; match to protein family HMM PF00166 chaperonin GroES	10 kDa chaperonin	10 kDa chaperonin	Mb3452c, groES, len: 100 aa. Equivalent to Rv3418c, len: 100 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 100 aa overlap). groES (alternate gene names: cpn10, mpt57), 10 kDa chaperonin (protein cpn10) (see citations below), equivalent to P24301|CH10_MYCLE|MOPB|GROES|CHPA|ML0380|B1620_C3_227|B229 _ C3_247 from Mycobacterium leprae (99 aa), FASTA scores: opt: 568, E(): 2.1e-31, (89.9% identity in 99 aa overlap).  And also strongly identical to others e.g.  O86017|CH10_MYCAV|MOPB|GROES from Mycobacterium avium and Mycobacterium paratuberculosis (99 aa), FASTA scores: opt: 611, E(): 2.9e-34, (96.95% identity in 99 aa overlap); P15020|CH10_MYCBO|MOPB|GROES from Mycobacterium bovis (99 aa), FASTA scores: opt: 596, E(): 2.9e-33, (98.95% identity in 94 aa overlap); P40172|CH10_STRCO|GROES|SC6G4.39 from Streptomyces coelicolor and Streptomyces lividans (102 aa), FASTA scores: opt: 480, E(): 1.6e-25, (76.75% identity in 99 aa overlap); etc. Also identical to MSG10KAG_1, MT10KAG_1, MTBCGA_1. Contains PS00681 Chaperonins cpn10 signature.  BELONGS TO THE GROES CHAPERONIN FAMILY. 10 KDA CHAPERONIN GROES (PROTEIN CPN10) (PROTEIN GROES) (BCG-A HEAT SHOCK PROTEIN) (10 KDA ANTIGEN)	chaperonin GroES	10 kDa chaperonin	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 10kDa chaperonin	GroES 10 kDa chaperonin protein Cpn10 GroES protein cochaperonin	10 kDa chaperonin	10 kDa chaperonin	IPR001476: Chaperonin Cpn10 chaperone Hsp10, affects cell division	Co-chaperonin GroES (HSP10)	
CHLTR00114	Oligoendopeptidase	oligoendopeptidase F	Oligoendopeptidase F	identified by similarity to EGAD:13184; match to protein family HMM PF01432; match to protein family HMM TIGR00181 oligoendopeptidase F	Oligoendopeptidase F-zinc metalloprotease	Oligoendopeptidase F	oligopeptidase	Thimet oligopeptidase-like protein	Oligoendopeptidase F	Molecular Function: metalloendopeptidase activity (GO:0004222), Biological Process: proteolysis and peptidolysis (GO:0006508) oligoendopeptidase F,Pz peptidase	oligoendopeptidase F	endopeptidase F oligopeptidase	Oligoendopeptidase F homolog	Similar to Bacillus licheniformis Pz-peptidase SWALL:P70922 (EMBL:D88209) (628 aa) fasta scores: E(): 1.5e-82, 36.92% id in 612 aa, and to Chlamydophila caviae oligoendopeptidase F PepF or cca00641 SWALL:Q822N8 (EMBL:AE016996) (609 aa) fasta scores: E(): 0, 86.7% id in 609 aa putative peptidase	Group B oligopeptidase pepB	thimet oligopeptidase homologue	identified by match to PFAM protein family HMM PF01432 oligoendopeptidase B	Ortholog of S. aureus MRSA252 (BX571856) SAR0968 putative oligopeptidase	Oligoendopeptidase F	thimet oligopeptidase homologue	Oligoendopeptidase F	best blastp match gb|AAK34212.1| (AE006576) putative oligopeptidase [Streptococcus pyogenes M1 GAS] putative oligopeptidase	identified by similarity to SP:P54124; match to protein family HMM PF01432; match to protein family HMM TIGR00181 oligoendopeptidase F	Group B oligopeptidase	oligopeptidase	oligoendopeptidase F	ThiMet oligopeptidase	identified by sequence similarity; putative; ORF located using Blastx; COG1164 oligoendopeptidase F	identified by sequence similarity; putative; ORF located using Blastx; COG1164 oligoendopeptidase F	
CHLTR00115	Chaperone protein clpB	endopeptidase Clp ATP-binding chain B (ClpB)	conserved gene ClpB protein	endopeptidase Clp ATP-binding chain B (ClpB)	Chaperone protein clpB	ATP-dependent Clp protease, ATP-binding subunit	Chaperone protein clpB	identified by similarity to SP:Q9RA63; match to protein family HMM PF00004; match to protein family HMM PF02861 ATP-dependent chaperone protein ClpB	Chaperone protein clpB	Chaperone protein clpB	Mb0391c, clpB, len: 848 aa. Equivalent to Rv0384c, len: 848 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 848 aa overlap). Probable clpB (alternate gene name: htpM), endopeptidase ATP-binding protein, chain B (EC 3.-.-.-), equivalent to AC32007.1|AL583925 heat shock protein from Mycobacterium leprae (848 aa). Also highly similar to others e.g.  P53532|CLPB_CORGL|1163118|AAB49540.1|U43536|CGU43536_1 CLPB PROTEIN (heat-inducible expression) from Corynebacterium glutamicum (852 aa), FASTA scores: opt: 4113, E(): 0, (74.5% identity in 846 aa overlap); T36551|4753885|CAB42048.1|AL049754|clpB|SCOEDB|SCH10.39c probable ATP-dependent proteinase ATP-binding chain from Streptomyces coelicolor (853 aa); P03815|CLPB_ECOLI|1788943|AAC75641.1|AE000345 CLPB PROTEIN (HEAT SHOCK PROTEIN F84.1) from Escherichia coli strains K12 and O157:H7 (857 aa); etc. Also similar to Rv3596c|ClpC from Mycobacterium tuberculosis. Contains PS00870 and PS00871 Chaperonins clpA/B signatures and two PS000017 ATP/GTP-binding site motives A (P-loop). BELONGS TO THE CLPA/CLPB FAMILY. Contains probable coiled-coil domain from aa 411-503. PROBABLE ENDOPEPTIDASE ATP BINDING PROTEIN (CHAIN B) CLPB (CLPB PROTEIN) (HEAT SHOCK PROTEIN F84.1)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ATP-dependent Clp protease subunit	Chaperone protein clpB	ATP-dependent protease ATP-binding subunit	ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones	Similar to Brucella suis protein ClpB ATPase stress-respsonse protein or br1864 SWALL:Q9AEM5 (EMBL:AJ251205) (874 aa) fasta scores: E(): 3.3e-133, 50% id in 864 aa, and to Chlamydophila caviae ATP-dependent Clp protease, subunit B ClpB or cca00625 SWALL:Q822Q4 (EMBL:AE016996) (864 aa) fasta scores: E(): 0, 95.83% id in 864 aa, and to Caulobacter crescentus ATP-dependent Clp protease, ATP-binding subunit ClpB cc0878 SWALL:Q9A9T4 (EMBL:AE005764) (859 aa) fasta scores: E(): 5.5e-135, 51.1% id in 863 aa putative ClpB ATPase stress response protein	similar to BR1864, ATP-dependent Clp protease, ATP-binding subunit ClpB ClpB, ATP-dependent Clp protease, ATP-binding subunit ClpB	Chaperone protein clpB	Chaperone clpB	ATP-dependent protease, Hsp 100, part of novel multi-chaperone system with DnaK, DnaJ, and GrpE	ClpB protein	Similar to sp|P44403|CLPB_HAEIN sp|P03815|CLPB_ECOLI sp|O53719|CLPB_MYCTU sp|O83110|CLPB_TREPA sp|Q9RA63|CLPB_THETH sp|P03815|CLPB_ECOLI sp|P53533|CLPB_SYNP7 sp|O53719|CLPB_MYCTU sp|P44403|CLPB_HAEIN rc||clpB; Ortholog to ERGA_CDS_06620 ClpB protein	COG0542 ATPases with chaperone activity ATP-binding subunit ATP-dependent clp protease ATP-binding subunit	Class III stress response-related ATPase, truncation	COG0542 ATP-dependent Clp protease	ClpB protein	ATPases with chaperone activity, ATP-binding subunit ClpA protein	Chaperone protein clpB	ATP-dependent Clp protease, ATP-binding subunit	
CHLTR00116	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00117	Inclusion membrane protein D	Inclusion membrane protein D	Inclusion membrane protein D	
CHLTR00118	Inclusion membrane protein E	Inclusion membrane protein E	Inclusion membrane protein E	
CHLTR00119	Inclusion membrane protein F	Inclusion membrane protein F	Inclusion membrane protein F	
CHLTR00120	Inclusion membrane protein G	Inclusion membrane protein G	Inclusion membrane protein G	
CHLTR00121	Inclusion membrane protein A	inclusion membrane protein	inclusion membrane protein A	Inclusion membrane protein A precursor	Inclusion membrane protein A precursor	
CHLTR00122	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00123	Ribulose-phosphate 3-epimerase	Ribulose-phosphate 3-epimerase	Ribulose-5-phosphate 3-epimerase homolog	Rpe	Probable ribulose-phosphate 3-epimerase protein	Ribulose-phosphate 3-epimerase	ribulose-phosphate 3-epimerase	conserved gene D-ribulose-5-phosphate-3-epimerase	ribulose-phosphate 3-epimerase	Ribulose-phosphate 3-epimerase	identified by similarity to EGAD:101737; match to protein family HMM PF00834; match to protein family HMM TIGR01163 ribulose-phosphate 3-epimerase	D-ribulose-5-phosphate 3 epimerase	Ribulose-phosphate 3-epimerase	ribulose-phosphate 3-epimerase	identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163 ribulose-phosphate 3-epimerase	Ribulose-phosphate 3-epimerase	ribulose-phosphate 3-epimerase	D-ribulose-5-phosphate 3-epimerase	Ribulose-phosphate 3-epimerase	Ribulose-phosphate 3-epimerase	Ribulose-phosphate 3-epimerase	Mb1443, rpe, len: 232 aa. Equivalent to Rv1408, len: 232 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 232 aa overlap). Probable rpe, ribulose-phosphate 3-epimerase (EC 5.1.3.1), similar to many e.g. CXEC_ALCEU|P40117 (241 aa), FASTA scores: opt: 638, E(): 1.5e-34, (48.3% identity in 234 aa overlap); and RPE_ECOLI|P32661 ribulose-phosphate 3-epimerase (225 aa), FASTA scores: E(): 0, (46.2% identity in 221 aa overlap).  Contains PS01085 Ribulose-phosphate 3-epimerase family signature 1. BELONGS TO THE RIBULOSE-PHOSPHATE 3-EPIMERASE FAMILY. PROBABLE RIBULOSE-PHOSPHATE 3-EPIMERASE RPE (PPE) (R5P3E) (Pentose-5-phosphate 3-epimerase)	InterProMatches:IPR000056; Molecular Function: ribulose-phosphate 3-epimerase activity (GO:0004750), Biological Process: carbohydrate metabolism (GO:0005975) ribulose-5-phosphate 3-epimerase Rpe	ribulose-phosphate 3-epimerase	Ribulose-phosphate 3-epimerase	ribulose-5-phosphate 3-epimerase ribulose-phosphate 3-epimerase	Ribulose-phosphate 3-epimerase	Ribulose-phosphate 3-epimerase	IPR000056: Ribulose-phosphate 3-epimerase D-ribulose-5-phosphate 3-epimerase	
CHLTR00124	Elongation factor P 1	Elongation factor P-like protein	Elongation factor P-like protein	elongation factor	IPR001059: Elongation factor P (EF-P) putative elongation factor	similar to Salmonella typhimurium putative elongation factor putative elongation factor	Similar to many proposed elongation factors including: Staphylococcus epidermidis elongation factor P EfP or Se1213 SWALL:EFP_STAEP (SWALL:Q8CP34) (185 aa) fasta scores: E(): 2.6e-18, 32.79% id in 186 aa and to Thermotoga maritima elongation factor P EfP or tm1763 SWALL:EFP_THEMA (SWALL:Q9X284) (185 aa) fasta scores: E(): 1.2e-19, 38.17% id in 186 aa putative elongation factor	Elongation factor P-like protein	protein translation elongation factor P (EF-P)	Elongation factor P-like protein	elongation factor P	identified by match to protein family HMM PF01132; match to protein family HMM TIGR02178 elongation factor P-like protein YeiP	Translation elongation factor P	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type f : factor putative elongation factor P-like protein	translation elongation factor P identified by match to protein family HMM PF01132	translation elongation factor P (EF-P) translation initiation factor 5A (eIF-5A); COG0231	Protein Translation Elongation Factor P COG0231 [J] Translation elongation factor P (EF-P); translation initiation factor 5A (eIF-5A)	translation elongation factor P1	Elongation factor P-like protein	Translation elongation factor P	Putative elongation factor P	Elongation factor P (EF-P)	putative elongation factor P family protein	Elongation factor P/YeiP	Elongation factor P-like protein YeiP	Elongation factor P-like protein	Translation elongation factor P	Elongation factor P	translation elongation factor P EF-P	
CHLTR00125	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	Putative biotin carboxyl carrier protein of acetyl-coa carboxylase	identified by match to protein family HMM PF00364 acetyl-CoA carboxylase, biotin carboxyl carrier protein, putative	Acetyl-CoA carboxylase	identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531 acetyl-CoA carboxylase, biotin carboxyl carrier protein	Acetyl-CoA carboxylase, biotin carboxyl carrier protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark biotin carboxyl carrier protein of acetyl-CoA carboxilase	Similar to many biotin-binding proteins including: Bacillus halodurans acetyl-CoA carboxylase biotin carboxyl carrier subunit AccB or bh2788 SWALL:Q9K962 (EMBL:AP001516) (169 aa) fasta scores: E(): 6.9e-15, 40.74% id in 162 aa and Synechococcus elongatus biotin carboxyl carrier protein of acetyl-CoA carboxylase AccB or tlr1295 SWALL:Q8DJD2 (EMBL:AP005373) (161 aa) fasta scores: E(): 4.6e-12, 36.24% id in 149 aa putative biotin-binding protein	Biotin carboxyl carrier protein	hypothetical protein, similar to acetyl-CoA carboxylase (biotin carboxyl carrier subunit), accB homolog	BIOTIN CARBOXYL CARRIER PROTEIN	Ortholog of S. aureus MRSA252 (BX571856) SAR1686 putative biotin carboxyl carrier protein of acetyl-CoA carboxylase	hypothetical protein, similar to acetyl-CoA carboxylase (biotin carboxyl carrier subunit), accB homolog	Biotin / Lipoyl attachment:Acetyl-CoA biotin carboxyl carrier...	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	biotin carboxyl carrier protein of acetyl-CoA	AccB acetyl-CoA carboxylase biotin carboxyl carrier protein	Biotin carboxyl carrier protein	hypothetical protein, similar to acetyl-CoA carboxylase (biotin carboxyl carrier subunit), accB homolog	Similar to Bacillus subtilis biotin carboxyl carrier protein of acetyl-CoA carboxylase AccB SW:BCCP_BACSU (P49786) (159 aa) fasta scores: E(): 7.2e-08, 30.573% id in 157 aa, and to Aquifex aeolicus biotin carboxyl carrier protein AQ_1363 TR:O67375 (EMBL:AE000736) (154 aa) fasta scores: E(): 1e-07, 31.333% id in 150 aa putative biotin carboxyl carrier protein of acetyl-CoA carboxylase	acetyl-CoA biotin carboxyl carrier	similar to gi|27468126|ref|NP_764763.1| [Staphylococcus epidermidis ATCC 12228], percent identity 74 in 160 aa, BLASTP E(): 6e-58 biotin carboxyl carrier protein of acetyl-CoA carboxylase	Acetyl-CoA biotin carboxyl carrier	acetyl-CoA carboxylase, biotin carboxyl carrier protein identified by match to protein family HMM PF00364	acetyl-CoA carboxylase, biotin carboxyl carrier protein	Acetyl-CoA carboxylase, biotin carboxyl carrier protein	Biotin carboxyl carrier protein of acetyl-CoA carboxylase COG0511 [I] Biotin carboxyl carrier protein	acetyl-coenzyme A carboxylase carboxyl carrier protein	acetyl-CoA carboxylase, biotin carboxyl carrier protein	
CHLTR00126	Biotin Carboxylase	AccC protein	Probable biotin carboxylase protein	Acetyl-CoA carboxylase, biotin carboxylase subunit	identified by similarity to SP:P49787; match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514 acetyl-CoA carboxylase, biotin carboxylase	biotin carboxylase	identified by similarity to SP:P24182; match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514 acetyl-CoA carboxylase, biotin carboxylase	Acetyl-CoA carboxylase (Biotin carboxylase subunit) accC	Biotin carboxylase	identified by similarity to SP:P24182; match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514 acetyl-CoA carboxylase, biotin carboxylase	Acetyl-CoA carboxylase, biotin carboxylase	InterProMatches:IPR004549; Molecular Function: ligase activity (GO:0016874) acetyl-CoA carboxylase subunit (biotin carboxylase subunit)	biotin carboxylase subunit acetyl-CoA carboxylase	Similar to Bacillus subtilis biotin carboxylase AccC or BSU24340 SWALL:ACCC_BACSU (SWALL:P49787) (448 aa) fasta scores: E(): 1.4e-92, 53.6% id in 444 aa, and to Anabaena sp. biotin carboxylase AccC or ALR0939 SWALL:ACCC_ANASP (SWALL:Q06862) (447 aa) fasta scores: E(): 7.4e-101, 57.59% id in 441 aa biotin carboxylase	Biotin carboxylase	similar to BR0906, acetyl-CoA carboxylase, biotin carboxylase AccC, acetyl-CoA carboxylase, biotin carboxylase	Biotin carboxylase	acetyl-CoA carboxylase accC (biotin carboxylase subunit)	BIOTIN CARBOXYLASE	Ortholog of S. aureus MRSA252 (BX571856) SAR1604 biotin carboxylase subunit of acetyl-CoA carboxylase	acetyl-CoA carboxylase accC, biotin carboxylase subunit	acetyl-CoA carboxylase, biotin carboxylase subunit	pyruvate carboxylase subunit A	identified by similarity to SP:P49787; match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514 acetyl-CoA carboxylase, biotin carboxylase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme biotin carboxylase (A subunit of acetyl-CoA carboxylase)	biotin carboxylase; COG0439 acetyl-CoA carboxylase	Similar to Q9KV62 Acetyl-CoA carboxylase, biotin carboxylase subunit from Vibrio cholerae (447 aa). FASTA: opt: 2119 Z-score: 2505.5 E(): 1.2e-131 Smith-Waterman score: 2119; 70.270 identity in 444 aa overlap Acetyl-CoA carboxylase, biotin carboxylase subunit	Acetyl-CoA carboxylase, biotin carboxylase	biotin carboxylase	
CHLTR00127	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50s ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal subunit protein L13	conserved gene 50S ribosomal protein L13	50S ribosomal subunit protein L13	50S ribosomal protein L13	identified by similarity to EGAD:9427; match to protein family HMM PF00572; match to protein family HMM TIGR01066 ribosomal protein L13	50S ribosomal protein L13	LSU ribosomal protein L13P	50S ribosomal protein L13	identified by similarity to SP:P02410; match to protein family HMM PF00572; match to protein family HMM TIGR01066 ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S RIBOSOMAL PROTEIN L13	50S ribosomal protein L13	identified by similarity to SP:P02410; match to protein family HMM PF00572; match to protein family HMM TIGR01066 ribosomal protein L13	50S ribosomal protein L13	Ribosomal protein L13	50S ribosomal protein L13	Mb3473c, rplM, len: 147 aa. Equivalent to Rv3443c, len: 147 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 147 aa overlap). Probable rplM, 50S ribosomal protein L13, equivalent to P38014|RL13_MYCLE|RPLM|ML0364|B229_C3_232 from Mycobacterium leprae (147 aa), FASTA scores: opt: 917, E(): 7.5e-53, (91.15% identity in 147 aa overlap). Also highly similar to others e.g.  Q53874|RL13_STRCO|RPLM|SC6G4.12 from Streptomyces coelicolor (147 aa), FASTA scores: opt: 668, E(): 1.1e-36, (65.5% identity in 145 aa overlap); Q9X1G5|RL13_THEMA|RPLM|TM1454 from Thermotoga maritima (149 aa), FASTA scores: opt: 536, E(): 4.4e-28, (53.65% identity in 136 aa overlap); O67722|RL13_AQUAE|RPLM|AQ_1877 from Aquifex aeolicus (144 aa), FASTA scores: opt: 529, E(): 1.2e-27, (53.2% identity in 141 aa overlap); etc. BELONGS TO THE L13P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 50S RIBOSOMAL PROTEIN L13 RPLM	InterProMatches:IPR005823; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein L13	
CHLTR00128	30S ribosomal protein S9	30S ribosomal protein S9	SSU ribosomal protein S9P	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30s ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal subunit protein S9	conserved gene 30S ribosomal protein S9	30S ribosomal subunit protein S9	30S ribosomal protein S9	identified by match to protein family HMM PF00380 ribosomal protein S9	30S ribosomal protein S9	SSU ribosomal protein S9P	30S ribosomal protein S9	identified by similarity to SP:P02363; match to protein family HMM PF00380 ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S RIBOSOMAL PROTEIN S9	30S ribosomal protein S9	identified by similarity to SP:P02363; match to protein family HMM PF00380 ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	Mb3472c, rpsI, len: 151 aa. Equivalent to Rv3442c, len: 151 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 151 aa overlap). Probable rpsI, ribosomal protein S9, equivalent to P40828|RS9_MYCLE|ML0365|B229_C2_191 30S RIBOSOMAL PROTEIN S9 (153 aa), FASTA scores: opt: 800, E(): 2.1e-42, (83.85% identity in 155 aa overlap). Also highly similar to others e.g. Q53875|RS9_STRCO|SC6G4.13 from Streptomyces coelicolor (170 aa), FASTA scores: opt: 533, E(): 5.7e-26, (60.75% identity in 135 aa overlap); Q9KGD4|RPSI|BH0169 (BS10) from Bacillus halodurans (130 aa), FASTA scores: opt: 469, E(): 3.8e-22, (58.65% identity in 121 aa overlap); Q9CDG7|RPSI from Lactococcus lactis (subsp.  lactis) (Streptococcus lactis) (130 aa), FASTA scores: opt: 451, E(): 4.9e-21, (58.65% identity in 121 aa overlap); P07842|RS9_BACST|RPSI from Bacillus stearothermophilus (129 aa), FASTA scores: opt: 448, E(): 7.4e-21, (54.55% identity in 121 aa overlap); etc.  Contains PS00360 Ribosomal protein S9 signature. BELONGS TO THE S9P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 30S RIBOSOMAL PROTEIN S9 RPSI	
CHLTR00129	Predicted polysaccharide hydrolase-invasin repeat family	polysaccharide hydrolase-invasin repeat family	chitinase	Chitinase	Chitinase	Putative endopeptidase-related protein	Chitinase	
CHLTR00130	Adenylate kinase	Adenylate kinase	adenylate kinase	Adenylate kinase	Adenylate kinase	adenylate kinase	Adenylate kinase	Adenylate kinase	adenylate kinase	conserved gene adenylate kinase	adenylate kinase	Adenylate kinase	identified by similarity to EGAD:18647; match to protein family HMM PF00406; match to protein family HMM PF05191; match to protein family HMM TIGR01351 adenylate kinase	Adenylate kinase	Adenylate kinase	adenylate kinase	Adenylate kinase	adenylate kinase	Adenylate kinase	Adenylate kinase	Adenylate kinase	Adenylate kinase	Adenylate kinase	Adenylate kinase	Adenylate kinase	Mb0754, adk, len: 181 aa. Equivalent to Rv0733, len: 181 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 181 aa overlap). Probable adk, adenylate kinase (ATP-AMP transphosphorylase) (EC 2.7.4.3), equivalent to Z98756|MLCB24 92_28 probable adenylate kinase from Mycobacterium leprae (181 aa), FASTA scores: opt: 978, E(): 0, (83.6% identity in 177 aa overlap); and AAF86323.1|AF271342 putative adenylate kinase from Mycobacterium marinum (124 aa) (N-terminus shorter). Also highly similar to others e.g.  P43414|KAD_STRCO ADENYLATE KINASE from Streptomyces coelicolor (217 aa), FASTA score: (43.0% identity in 186 aa overlap); etc. Contains PS00113 Adenylate kinase signature. BELONGS TO THE ADENYLATE KINASE FAMILY. PROBABLE ADENYLATE KINASE ADK (ATP-AMP TRANSPHOSPHORYLASE)	InterProMatches:IPR006259; Molecular Function: phosphotransferase activity, phosphate group as acceptor (GO:0016776) adenylate kinase	ATP-AMP transphosphorylase adenylate kinase	Adenylate kinase	
CHLTR00131	ABC Amino Acid Transporter Permease	ABC amino acid transporter, inner membrane subunit	ABC transporter of amino acids	Amino acid ABC transporter, permease protein, 3- TM region, His/Glu/Gln/Arg/opine	Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine	GlnP glutamine transport system permease protein	ABC-type amino acid transport system, permease component	Putative ABC-membrane transport protein, inner membrane component	Putative ABC-membrane transport protein, inner membrane component	Polar amino acid ABC transporter, inner membrane subunit	Putative ABC-membrane transport protein, inner membrane component	Amino acid ABC transporter, permease protein	
CHLTR00132	ABC Amino Acid Transporter ATPase	Arginine/histidine ABC transporter, ATPase component, putative	ABC-type polar amino acid transport system, ATPase component	ABC-type polar amino acid transport system, ATPase component	Amino acid ABC transporter, ATP-binding protein SP1242	ABC transporter, ATP-binding component	ABC transporter, ATP-binding component	Putative glutamine ABC transporter, ATP-binding protein 1	Putative glutamine ABC transporter, ATP-binding protein 1	ABC transporter, ATP-binding component	
CHLTR00133	Possible Transmembrane Protein	conserved hypothetical protein	hypothetical membrane spanning protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00134	Putative uncharacterized protein	identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 ribonuclease BN, putative	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pe : putative enzyme putative ribonuclease (Rbn)	Similar to Porphyromonas gingivalis W83 ribonuclease BN, putative PG0958 SWALL:AAQ66088 (EMBL:AE017175) (411 aa) fasta scores: E(): 4.1e-72, 44.79% id in 413 aa, and to (although longer in its C-terminal region) Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 tRNA processing ribonuclease BN Rbn or B3886 or C4833 or Z5425 or ECS4809 SWALL:RBN_ECOLI (SWALL:P32146) (290 aa) fasta scores: E(): 6.1e-16, 28.45% id in 253 aa putative tRNA processing ribonuclease	conserved hypothetical protein	probable ribonuclease BN	Ribonuclease BN	Ribonuclease BN	ribonuclease BN, putative	Ribonuclease BN	ribonuclease BN-like family protein Predicted membrane protein; COG1295	tRNA-processing ribonuclease BN	Ribonuclease BN	membrane spanning protein ribonuclease BN-like family	putative ribonuclease BN TIGRFAM: putative ribonuclease BN PFAM: ribonuclease BN KEGG: hch:HCH_01524 ribonuclease BN-like family protein	ribonuclease BN, putative	Putative ribonuclease BN	putative ribonuclease BN TIGRFAM: putative ribonuclease BN PFAM: ribonuclease BN KEGG: gsu:GSU2460 ribonuclease BN, putative	YihY family protein identified by similarity to SP:P32146; match to protein family HMM PF03631; match to protein family HMM TIGR00765	ribonuclease BN	Complete genome	ribonuclease BN, putative	tRNA processing ribonuclease BN	putative ribonuclease BN TIGRFAM: putative ribonuclease BN PFAM: ribonuclease BN KEGG: sat:SYN_02541 membrane spanning protein ribonuclease BN-like family	Ribonuclease BN	Ribonuclease BN	ribonuclease BN	Ribonuclease BN	Putative ribonuclease BN	
CHLTR00135	Predicted rRNA methylase	methylase	conserved hypothetical protein	metallothionein family protein	Putative uncharacterized protein	Putative methyltransferase	Putative methyltransferase	Putative uncharacterized protein	SAM-dependent methyltransferase	Putative methyltransferase	Putative uncharacterized protein	
CHLTR00136	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00137	Putative uncharacterized protein	hypothetical protein	Putative exported protein precursor	Putative exported protein precursor	
CHLTR00138	Predicted Lysophospholipase esterase	serine esterase esterase	Esterase cytoplasmic protein	Esterase cytoplasmic protein	phospholipase/carboxylesterase family protein identified by match to protein family HMM PF02230	carboxylesterase	Lodderomyces elongisporus (LELG_04020.1) conserved hypothetical protein (translation)	Putative phospholipase-carboxylesterase family protein	Putative phospholipase-carboxylesterase family protein	Esterase	Putative uncharacterized protein	Putative phospholipase-carboxylesterase family protein	Phospholipase/carboxylesterase family protein	
CHLTR00139	SuA5 Superfamily-related Protein	Similar to putative translation initiation protein hypothetical protein	Sua5	Putative ribosome maturation factor rimN	Putative uncharacterized protein	Uncharacterized protein Rv1301/MT1340	Mb1333, -, len: 217 aa. Equivalent to Rv1301, len: 217 aa, from Mycobacterium tuberculosis strain H37Rv, (99.5% identity in 217 aa overlap). Conserved hypothetical protein, highly similar to YRFE_MYCLE|P45831 hypothetical 22.7 kd protein in rfe-hemk intergenic region, (220 aa), FASTA scores: opt: 1168, E(): 0, (82.8% identity in 215 aa overlap). Contains PS01147 Hypothetical SUA5/yciO/yrdC family signature. BELONGS TO THE SUA5/YRDC/YCIO/YWLC FAMILY. CONSERVED HYPOTHETICAL PROTEIN	Putative uncharacterized protein yfjA	Putative translation factor, SUA5	Weakly similar to many e.g. Clostridium perfringens hypothetical protein Cpe2200 SWALL:Q8XIC1 (EMBL:AP003193) (350 aa) fasta scores: E(): 1.6e-13, 32.35% id in 204 aa hypothetical protein	Putative uncharacterized protein	best blastp match gb|AAK34015.1| (AE006556) hypothetical protein [Streptococcus pyogenes M1 GAS] hypothetical protein	Similar to rp||RP848 rc||RC1315 sp|P39153|YWLC_BACSU sp|Q60369|Y062_METJA sp|P32579|SUA5_YEAST sp|P45748|YRDC_ECOLI sp|Q10618|YD01_MYCTU; Ortholog to ERGA_CDS_02950 Conserved hypothetical protein (putative translation factor SUA5 family)	conserved hypothetical protein	Similar to rp||RP848 rc||RC1315 sp|P39153|YWLC_BACSU sp|Q60369|Y062_METJA sp|P32579|SUA5_YEAST sp|P45748|YRDC_ECOLI sp|Q10618|YD01_MYCTU; Ortholog to ERWE_CDS_03010 Conserved hypothetical protein (putative translation factor SUA5 family)	identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057 Sua5/YciO/YrdC/YwlC family protein	Sua5/YciO/YrdC/YwlC	SUA5 protein	putative translation factor Sua5	Sua5/YciO/YrdC/YwlC-like protein	Sua5/YciO/YrdC/YwlC	Sua5/YciO/YrdC/YwlC family protein	Putative translation factor protein Sua5/YciO/YrdC/YwlC family	translation factor SUA5 family protein	sua5/YciO/YrdC/YwlC family protein	Sua5/YciO/YrdC/YwlC family protein identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057	SUA5/yciO/yrdC-like protein	Sua5/YciO/YrdC/YwlC family protein identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057	Sua5/YciO/YrdC/YwlC	
CHLTR00141	Oligopeptide Binding Protein	Periplasmic murein peptide-binding protein	Dipeptide ABC transporter	Similar to Bacillus subtilis oligopeptide-binding protein precursor OppA or spo0ka or bsu11430 SWALL:OPPA_BACSU (SWALL:P24141) (545 aa) fasta scores: E(): 1.3e-07, 26.23% id in 446 aa, and to Chlamydophila caviae peptide ABC transporter, periplasmic binding protein cca00599 SWALL:Q822T0 (EMBL:AE016996) (445 aa) fasta scores: E(): 9.6e-152, 81.16% id in 446 aa, and to Fusobacterium nucleatum subsp. vincentii ATCC 49256 dipeptide-binding protein fnv1219 SWALL:EAA24064 (EMBL:AABF01000057) (474 aa) fasta scores: E(): 2e-12, 26.73% id in 389 aa putative ABC transporter peptide periplasmic binding lipoprotein	similar to BRA0786, peptide ABC transporter, periplasmic peptide-binding protein, hypothetical peptide peptide ABC transporter, periplasmic peptide-binding protein	Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein	Similar to: HI0213, Y213_HAEIN putative ABC-type oligopeptide transport system, periplasmic component	ABC-type dipeptide/oligopeptide/nickel transport systems, periplasmic components OppA protein	oligopeptide ABC transporter, oligopeptide-binding protein	extracellular solute-binding protein, family 5	Code: E; COG: COG0747 putative hemin-binding lipoprotein	Bacterial extracellular solute-binding protein, family 5	identified by similarity to SP:P23847; match to protein family HMM PF00496 oligopeptide/dipeptide ABC transporter, peptide-binding protein	Code: E; COG: COG0747 putative hemin-binding lipoprotein	extracellular solute-binding protein, family 5	ABC dipeptide/oligopeptide/nickel family transporter, periplasmic ligand binding protein	Code: E; COG: COG4166 putative transport periplasmic protein	puative substrate-binding ABC transporter protein similarity:fasta; SWALL:Q92P42 (EMBL:AL591789); Rhizobium meliloti; putative peptide-binding periplasmic ABC transporter protein; length 538 aa; 511 aa overlap; query 29-538 aa; subject 25-535 aa	Extracellular solute-binding protein, family 5 precursor	Extracellular solute-binding protein, family 5	extracellular solute-binding protein, family 5	extracellular solute-binding protein, family 5 PFAM: extracellular solute-binding protein, family 5 KEGG: bur:Bcep18194_B1867 ABC dipeptide/oligopeptide/nickel family transporter, periplasmic ligand binding protein	extracellular solute-binding protein, family 5	extracellular solute-binding protein, family 5 PFAM: extracellular solute-binding protein, family 5 KEGG: pol:Bpro_0139 extracellular solute-binding protein, family 5	putative oligopeptide ABC transporter binding protein initiation of sporulation, competence development	extracellular solute-binding protein, family 5 PFAM: extracellular solute-binding protein, family 5 KEGG: bcn:Bcen_4203 extracellular solute-binding protein, family 5	ABC peptide transporter, periplasmic ligand binding protein	periplasmic murein peptide-binding protein identified by match to protein family HMM PF00496	OppA oligopeptide-binding protein	
CHLTR00140	Dipeptidase	Putative peptidase	Similar to Brevibacillus borstelensis thermostable dipeptidase Bdp SWALL:Q9KH70 (EMBL:AF268476) (307 aa) fasta scores: E(): 6.3e-11, 26.8% id in 332 aa conserved hypothetical protein	zinc-dependent dipeptidase	Zn-dependent dipeptidase, microsomal dipeptidase- like protein	dipeptidase family protein identified by match to protein family HMM PF01244	microsomal dipeptidase	probable dipeptidase	Renal dipeptidase family protein	Membrane dipeptidase	Dipeptidase 1	Zn-dependent dipeptidase, microsomal dipeptidase homolog	Membrane dipeptidase	Microsomal dipeptidase	Microsomal dipeptidase	Membrane dipeptidase	Membrane dipeptidase	Membrane dipeptidase	Membrane dipeptidase	Probable dipeptidase Bdp	Membrane dipeptidase	Microsomal dipeptidase like protein	Membrane dipeptidase	Membrane dipeptidase	Microsomal dipeptidase	Renal dipeptidase family protein	Membrane dipeptidase	Dipeptidase family protein	peptidase M19 renal dipeptidase PFAM: peptidase M19 renal dipeptidase; KEGG: sil:SPO1542 renal dipeptidase family protein	
CHLTR00142	Putative uncharacterized protein ypdP	identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697 membrane protein, putative	Hypothetical protein SE1126	conserved protein YpdP	transporter	Putative uncharacterized protein TTHA0221	Similar to Staphylococcus aureus hypothetical protein SAV1432 or SA1265 or MW1321 SWALL:Q99U56 (EMBL:AP003362) (234 aa) fasta scores: E(): 9e-13, 28.38% id in 229 aa, and to Bacillus subtilis hypothetical protein YpdP or BSU21980 SWALL:YPDP_BACSU (SWALL:P54163) (229 aa) fasta scores: E(): 6.2e-10, 27.52% id in 218 aa conserved hypothetical membrane protein	conserved hypothetical protein	Ortholog of S. aureus MRSA252 (BX571856) SAR1445 putative membrane protein	Conserved hypothetical integral membrane protein	conserved hypothetical protein	Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT1567 SWALL:AAO76674 (EMBL:AE016932) (226 aa) fasta scores: E(): 5.4e-80, 90.26% id in 226 aa, and to Corynebacterium glutamicum uncharacterized Acr CGL0233 SWALL:Q8NTR9 (EMBL:AP005274) (246 aa) fasta scores: E(): 3.6e-24, 37.37% id in 206 aa, and to Corynebacterium efficiens conserved hypothetical protein ce0202 SWALL:Q8FU19 (EMBL:AP005214) (275 aa) fasta scores: E(): 9.8e-22, 36.27% id in 204 aa putative transmembrane protein	hypothetical protein, similar to membrane transporter protein	identified by match to protein family HMM TIGR00697 membrane protein, putative	Similar to Bacillus subtilis hypothetical protein YpdP SW:YPDP_BACSU (P54163) (229 aa) fasta scores: E(): 3.3e-37, 46.575% id in 219 aa, and to Archaeoglobus fulgidus conserved hypothetical protein AF2110 TR:O28170 (EMBL:AE000958) (241 aa) fasta scores: E(): 3.4e-29, 38.559% id in 236 aa putative membrane protein	conserved hypothetical membrane protein	identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697 membrane protein, putative	similar to gi|27468044|ref|NP_764681.1| [Staphylococcus epidermidis ATCC 12228], percent identity 76 in 234 aa, BLASTP E(): e-103 conserved hypothetical protein	putative membrane protein identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697	probable membrane protein	Putative integral membrane protein	conserved hypothetical protein	Conserved hypothetical integral membrane protein	conserved hypothetical protein	Conserved hypothetical protein inner membrane protein	Conserved hypothetical protein inner membrane protein	Protein of unknown function DUF165	conserved hypothetical membrane protein conserved hypothetical membrane proteins, 42% identity (59% similarity) to TrEMBL;Q73PF0 Has PF02592;Uncharacterized ACR, YhhQ family COG1738;IPR003744:This is a family of uncharacterized proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins. no signal peptide. 4 TMH. Conserved hypothetical protein	hypothetical membrane spanning protein	
CHLTR00143	Protein Translocase	preprotein translocase secA subunit	preprotein translocase subunit-like protein	Protein translocase	Protein translocase	Protein translocase	
CHLTR00144	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00145	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00146	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative membrane protein	Putative membrane protein	
CHLTR00147	Serine/threonine-protein kinase pkn1	serine/threonine protein kinase EC 2.7.1.-	serine/threonine protein kinase PFAM: protein kinase; protein of unknown function DUF323 SMART: tyrosine protein kinase; serine/threonine protein kinase KEGG: aba:Acid345_2578 serine/threonine protein kinase	serine/threonine-protein kinase PKN1 hypothetical protein	Protein kinase	Serine/threonine protein kinase, putative	jgi|Helro1|82669	Serine-threonine-protein kinase	Serine-threonine-protein kinase	Serine/threonine protein kinase	Putative serine/threonine protein kinase	Serine/threonine protein kinase	Serine-threonine-protein kinase	
CHLTR00148	DNA ligase	DNA ligase	DNA ligase	DNA ligase	Lig	DNA ligase	DNA ligase	DNA ligase	DNA ligase	conserved gene DNA ligase	DNA ligase	DNA ligase	identified by similarity to SP:O87703; match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 DNA ligase, NAD-dependent	DNA ligase	NAD-dependent DNA ligase	DNA ligase	identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 DNA ligase, NAD-dependent	DNA ligase	DNA ligase	DNA ligase	DNA ligase	DNA ligase	DNA ligase	identified by similarity to SP:O87703; match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03120; match to protein family HMM TIGR00575 DNA ligase, NAD-dependent	DNA ligase, NAD-dependent	DNA ligase	Mb3039c, ligA, len: 691 aa. Equivalent to Rv3014c, len: 691 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 691 aa overlap). Probable ligA (alternate gene name: lig), DNA ligase NAD-dependent (EC 6.5.1.2), equivalent to O33102|DNLJ_MYCLE|LIGA|LIG|ML1705|MLCB637.10 DNA LIGASE from Mycobacterium leprae (694 aa), FASTA scores: opt: 3844, E(): 0, (84.7% identity in 687 aa overlap). Also highly similar to many prokaryotic and eukaryotic ligases e.g. Q9Z585|LIGA|SC8D9.06 from Streptomyces coelicolor (735 aa), FASTA scores: opt: 2002, E(): 4e-113, (59.4% identity in 714 aa overlap); P49421|DNLJ_RHOMR|LIGA|LIG from Rhodothermus marinus (712 aa), FASTA scores: opt: 1835, E(): 4.6e-103, (45.55% identity in 685 aa overlap); P15042|DNLJ_ECOLI|LIGA|LIG|DNAL|PDEC|LOP|B2411 from Escherichia coli strain K12 (671 aa), FASTA scores: opt: 1696, E(): 1.1e-94, (43.8% identity in 680 aa overlap); etc. BELONGS TO THE NAD-DEPENDENT DNA LIGASE FAMILY. PROBABLE DNA LIGASE [NAD DEPENDENT] LIGA (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+])	InterProMatches:IPR001679; Molecular Function: DNA ligase (NAD+) activity (GO:0003911), Biological Process: DNA replication (GO:0006260), Biological Process: DNA repair (GO:0006281) DNA ligase	NAD-dependent polydeoxyribonucleotide synthase DNA ligase	
CHLTR00149	Putative uncharacterized protein	Similar to Chlamydophila caviae hypothetical protein cca00616 SWALL:Q822R3 (EMBL:AE016996) (1458 aa) fasta scores: E(): 0, 60.35% id in 1468 aa, and to Chlamydia trachomatis hypothetical protein Ct147 SWALL:O84149 (EMBL:AE001288) (1449 aa) fasta scores: E(): 5.3e-40, 24.63% id in 1498 aa, and to Chlamydia pneumoniae ct147 hypothetical protein cpj0150 SWALL:Q9JSI7 (EMBL:AP002545) (1537 aa) fasta scores: E(): 1.8e-37, 27.09% id in 1480 aa putative transmembrane protein	GRIP and coiled-coil domain containing 2 [Source:HGNC Symbol;Acc:23218]	myosin heavy chain major plasmodial	hypothetical membrane spanning protein	Putative integral membrane protein	Putative integral membrane protein	Putative uncharacterized protein	Putative integral membrane protein	
CHLTR00150	Monooxygenase	identified by match to protein family HMM PF01360; match to protein family HMM PF01494; match to protein family HMM PF07992 FAD-binding monooxygenase, PheA/TfdB family	Monooxygenase, FAD-binding:FAD dependent oxidoreductase	pentachlorophenol 4-monooxygenase EC 1.14.13.50	monooxygenase, FAD-binding	3-(3-hydroxy-phenyl)propionate hydroxylase	monooxygenase, FAD-binding	monooxygenase, FAD-binding	FAD-dependent monooxygenase	3-(3-hydroxy-phenyl) propionate hydroxylase	Pentachlorophenol monooxygenase	Monooxygenase, FAD-binding	Monooxygenase FAD-binding precursor	FAD-dependent monooxygenase	FAD-dependent monooxygenase	Monooxygenase FAD-binding	FAD dependent oxidoreductase	Monooxygenase FAD-binding	FAD-dependent monooxygenase	FAD binding protein	monooxygenase FAD-binding protein PFAM: monooxygenase FAD-binding; KEGG: psb:Psyr_2377 hypothetical protein	
CHLTR00151	Possible hydrolase	conserved hypothetical protein	alpha/beta hydrolase family protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00152	50S ribosomal protein L33	50S ribosomal protein L33	IPR001705: Ribosomal protein L33 50S ribosomal subunit protein L33	similar to Salmonella typhi CT18 50S ribosomal subunit protein L33 50S ribosomal subunit protein L33	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri 50s ribosomal protein L33 SWALL:RL33_ECOLI (SWALL:P02436) (54 aa) fasta scores: E(): 1.7e-05, 54.16% id in 48 aa, and to Buchnera aphidicola 50s ribosomal protein l33 RpmG or busg078 SWALL:AAM67648 (EMBL:AE014083) (55 aa) fasta scores: E(): 2.3e-07, 50.94% id in 53 aa 50s ribosomal protein l33	50S ribosomal protein L33	50S ribosomal protein L33	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type s : structure 50S ribosomal protein L33	LSU ribosomal protein L33P	Similar to: HI0950, RL33_HAEIN 50S ribosomal protein L33	Ribosomal protein L33 RpmG protein	50S ribosomal protein L33	50S ribosomal protein L33	50S ribosomal protein L33	50S ribosomal protein L33	50S ribosomal protein L33	identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023 ribosomal protein L33	identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023 ribosomal protein L33	Ribosomal protein L33	Ribosomal protein L33	Code: J; COG: COG0267 50S ribosomal subunit protein L33	Ribosomal protein L33	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 9098043, 9044258; Product type s : structural protein 50S ribosomal subunit protein L33	Code: J; COG: COG0267 50S ribosomal subunit protein L33	ribosomal protein L33	50S ribosomal protein L33	Ribosomal protein L33	Code: J; COG: COG0267 50S ribosomal subunit protein L33	ribosomal protein L33 PFAM: ribosomal protein L33: (2.5e-18) KEGG: dra:DR2049 50S ribosomal protein L33, ev=3e-23, 92% identity	
CHLTR00153	Putative uncharacterized protein	ABC transporter	lipoprotein releasing system transmembrane protein LolE	lipoprotein release inner membrane protein	Lipoprotein releasing system transmembrane protein	Lipoprotein releasing system, transmembrane protein, LolC/E family	Lipoprotein releasing systen, inner membrane component precursor	Lipoprotein releasing systen, inner membrane component precursor	Lipoprotein releasing system, transmembrane protein, LolC/E family	Lipoprotein releasing system, transmembrane protein, LolC/E family	Lipoprotein-releasing system, transmembrane protein, LolE	Lipoprotein releasing systen, inner membrane component	
CHLTR00154	ABC Transporter ATPase	Lipoprotein release ATP-binding component	Lipoprotein release ATP-binding component	
CHLTR00155	Putative uncharacterized protein	MAC/perforin family protein	MAC/perforin family protein	MAC/perforin family protein	MAC/perforin family protein	
CHLTR00156	Phospholipase D Endonuclease Superfamily	pseudo	pseudo	
CHLTR00157	Phospholipase D Endonuclease Superfamily	Phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein	Phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein	
CHLTR00159	Phospholipase D Endonuclease Superfamily	Phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein	Phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein	
CHLTR00160	Phospholipase D endonuclease superfamily	pseudo	pseudo	

CHLTR00162	Putative uncharacterized protein	pseudo	pseudo	
CHLTR00163	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00164	Putative uncharacterized protein	pseudo	pseudo	
CHLTR00165	Putative uncharacterized protein	Putative membrane protein	Putative membrane protein	
CHLTR00166	Putative uncharacterized protein	Putative membrane protein	Putative membrane protein	
CHLTR00167	Putative uncharacterized protein	


CHLTR00170	Putative uncharacterized protein	pseudo	pseudo	
CHLTR00171	Trp operon repressor homolog	Trp operon repressor	IPR000831: Trp repressor transcriptional repressor for trp operon and aroH (TrpR family)	similar to Salmonella typhi CT18 probable trp operon repressor probable trp operon repressor	Trp operon repressor	Trp operon repressor	Similar to: HI0830, TRPR_HAEIN Trp operon repressor	Trp operon repressor TrpR protein	Trp operon repressor	Code: K; COG: COG2973 regulator for trp operon and aroH; trp aporepressor	trp aporepressor; Code: K; COG: COG2973 regulator for trp operon and aroH	tryptophan operon repressor	trp aporepressor; Code: K; COG: COG2973 regulator for trp operon and aroH	transcription factor/trp operon repressor	Trp operon repressor	Trp operon repressor	Putative Trp operon repressor	Trp operon repressor	Trp operon repressor	Trp repressor	Trp operon repressor	trp operon repressor	Putative trp operon repressor	Trp operon repressor TIGRFAM: trp operon repressor PFAM: Trp repressor KEGG: son:SO3419 trp operon repressor	Trp operon repressor Code: K; COG: COG2973	Trp operon repressor TIGRFAM: trp operon repressor PFAM: Trp repressor KEGG: son:SO3419 trp operon repressor	Trp operon repressor	Trp operon repressor	trp operon repressor	
CHLTR00172	Tryptophan synthase beta chain	Tryptophan synthase beta chain	tryptophan synthase, beta subunit	Tryptophan synthase beta chain	Tryptophan synthase beta chain	Tryptophan synthase beta chain	tryptophan synthase beta subunit	conserved gene tryptophan synthetase, beta subunit	tryptophan synthase beta subunit	Tryptophan synthase beta chain	identified by match to protein family HMM PF00291; match to protein family HMM TIGR00263 tryptophan synthase, beta subunit	tryptophan synthase beta subunit	identified by match to protein family HMM PF00291; match to protein family HMM TIGR00263 tryptophan synthase, beta subunit	Tryptophan synthase beta chain	tryptophan synthase, beta subunit	Tryptophan synthase beta chain	Tryptophan synthase beta chain	identified by match to protein family HMM PF00291; match to protein family HMM TIGR00263 tryptophan synthase, beta subunit	TrpB	Tryptophan synthase, beta subunit	Tryptophan synthase beta chain	Mb1638, trpB, len: 410 aa. Equivalent to Rv1612, len: 410 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 410 aa overlap). Probable trpB, tryptophan synthase beta chain (EC 4.2.1.20). Equivalent to AL049913|MLCB1610_25 from Mycobacterium leprae (340 aa) (88.5% identity in 331 aa overlap). Similar to others e.g.  TRPB_CAUCR|P12290 tryptophan synthase beta chain from Caulobacter crescentus (406 aa), FASTA scores: opt: 1662, E(): 0, (60.6% identity in 404 aa overlap). BELONGS TO THE TRPB FAMILY. TETRAMER OF TWO ALPHA AND TWO BETA CHAINS. Probable tryptophan synthase, beta subunit trpB	InterProMatches:IPR006654; Molecular Function: tryptophan synthase activity (GO:0004834), Biological Process: tryptophan metabolism (GO:0006568) tryptophan synthase (beta subunit)	tryptophan synthase beta chain	Tryptophan synthase beta chain	Tryptophan synthase beta chain	Tryptophan synthase beta chain	IPR001926: Pyridoxal-5'-phosphate-dependent enzyme, beta family; IPR006653: Tryptophan synthase, beta chain and related tryptophan synthase, beta protein	similar to Salmonella typhi CT18 tryptophan synthase beta chain tryptophan synthase beta chain	
CHLTR00173	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	tryptophan synthase, alpha subunit	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	tryptophan synthase, alpha subunit	conserved gene tryptophan synthetase, alpha chain TrpA	tryptophan synthase, alpha subunit	Tryptophan synthase alpha chain	identified by similarity to EGAD:17750; match to protein family HMM PF00290; match to protein family HMM TIGR00262 tryptophan synthase, alpha subunit	tryptophan synthase alpha chain	identified by match to protein family HMM PF00290; match to protein family HMM TIGR00262 tryptophan synthase, alpha subunit	Tryptophan synthase alpha chain	tryptophan synthase, alpha subunit	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	identified by match to protein family HMM PF00290; match to protein family HMM TIGR00262 tryptophan synthase, alpha subunit	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	Mb1639, trpA, len: 270 aa. Equivalent to Rv1613, len: 270 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 270 aa overlap). Probable trpA, tryptophan synthase alpha chain (EC 4.2.1.20). FASTA best: O68906|TRPA_MYCIT TRYPTOPHAN SYNTHASE ALPHA CHAIN from Mycobacterium intracellulare (271 aa), opt: 1442, E(): 0, (85.3% identity in 265 aa overlap). Probable tryptophan synthase, alpha subunit trpA	InterProMatches:IPR002028; Molecular Function: tryptophan synthase activity (GO:0004834), Biological Process: tryptophan metabolism (GO:0006568) tryptophan synthase (alpha subunit)	tryptophan synthase alpha chain	Tryptophan synthase alpha chain	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark tryptophan synthase alpha chain	Tryptophan synthase alpha chain	Tryptophan synthase alpha chain	
CHLTR00174	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00175	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00176	Putative uncharacterized protein	
CHLTR00177	Putative uncharacterized protein	
CHLTR00178	Oligopeptide binding protein permease	OppA oligopeptide-binding protein	ABC-type oligopeptide transport system, periplasmic component	oligopeptide transporter, periplasmic-binding protein	Extracellular solute-binding protein family 5	Extracellular solute-binding protein family 5 precursor	Oligopeptide transport system binding protein precursor	Oligopeptide transport system binding protein precursor	ABC transporter, oligopeptide-binding protein	Oligopeptide ABC transporter, oligopeptide- binding protein	Putative oligopeptide ABC transporter, oligopeptide-binding protein	jgi|Capca1|129349|e_gw1.26375.2.1	Oligopeptide transport system binding protein	Extracellular solute-binding protein family 5	Extracellular solute-binding protein family 5	
CHLTR00179	Probable disulfide formation protein	disulfide oxidoreductase disulfide formation protein	Similar to Bacillus subtilis disulfide bond formation protein C BdbC or Bsu33470 SWALL:BDBC_BACSU (SWALL:O32217) (138 aa) fasta scores: E(): 3.1e-14, 40.79% id in 125 aa and to Coxiella burnetii probable disulfide formation protein Cbu0888 SWALL:BDBC_COXBU (SWALL:Q83D55) (147 aa) fasta scores: E(): 1.3e-20, 48.12% id in 133 aa putative disulfide bond formation lipoprotein	identified by match to protein family HMM PF02600 disulfide bond formation protein, DsbB family	disulfide bond formation protein (disulfide bond oxidoreductase)	disulfide bond formation protein	protein-disulfide oxidoreductase EC 1.8.4.-	Disulphide bond formation protein DsbB	Disulphide bond formation protein DsbB PFAM: Disulphide bond formation protein DsbB KEGG: rfr:Rfer_0415 disulphide bond formation protein DsbB	disulfide bond formation protein B	Disulfide oxidoreductase	Disulfide bond formation protein	Disulphide bond formation protein DsbB PFAM: Disulphide bond formation protein DsbB KEGG: cps:CPS_2701 disulfide bond formation protein, DsbB family	Thiol-disulfide oxdoreductase BdbC	Disulphide bond formation protein DsbB	Disulfide bond formation protein, DsbB family	BdbC	Disulphide bond formation protein DsbB	Disulphide bond formation protein DsbB	Disulphide bond formation protein DsbB	Disulphide bond formation protein DsbB PFAM: Disulphide bond formation protein DsbB KEGG: rrs:RoseRS_1773 disulphide bond formation protein DsbB	Disulfide dehydrogenase C	Probable disulfide formation protein	Disulfide bond formation protein B	Disulfide bond formation protein C	Disulfide bond formation protein C	Disulfide bond formation protein B	Disulphide bond formation protein DsbB precursor	Disulphide bond formation protein DsbB precursor	
CHLTR00180	Possible Disulfide Bond Chaperone	Similar to Coxiella burnetii hypothetical protein Cbu0889 SWALL:Q83D54 (EMBL:AE016962) (218 aa) fasta scores: E(): 1.2e-10, 33.18% id in 220 aa and to Vibrio parahaemolyticus putative membrane protein Vpa0994 SWALL:Q87HH1 (EMBL:AP005087) (262 aa) fasta scores: E(): 8.1e-05, 25.98% id in 204 aa putative exported protein	disulfide bond chaperone	possible disulfide bond chaperone	BdbD	Disulfide dehydrogenase D	DSBA oxidoreductase	Disulfide bond chaperone	Putative disulfide bond formation protein D	Putative disulfide bond formation protein D	Disulfide bond chaperone	Thiol:disulfide interchange protein	Disulfide bond chaperone	
CHLTR00181	Putative uncharacterized protein	hypothetical protein	Permease of the major facilitator superfamily COG0477	conserved hypothetical protein	hypothetical membrane spanning protein	Putative integral membrane protein	Putative integral membrane protein	Vitamin K epoxide reductase	Putative integral membrane protein	
CHLTR00182	Putative uncharacterized protein	Putative membrane protein	Putative membrane protein	Putative membrane protein	
CHLTR00183	ABC Transport ATPase	ABC transporter ATP-binding protein	ABC transporter, ATP-binding protein	ABC transporter, ATP-binding protein	
CHLTR00184	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00185	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	conserved gene 3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	hypothetical protein	identified by match to protein family HMM PF02348 3-deoxy-D-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	identified by similarity to SP:P04951; match to protein family HMM PF02348; match to protein family HMM TIGR00466 3-deoxy-D-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase protein	3-deoxy-manno-octulosonate cytidylyltransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 3-deoxy-manno-octulosonate cytidylyltransferase	CTP:CMP-3-deoxy-D-manno-octulosonate transferase	similar to Salmonella typhi CT18 3-deoxy-manno-octulosonate cytidylyltransferase 3-deoxy-manno-octulosonate cytidylyltransferase	Similar to Escherichia coli 3-deoxy-manno-octulosonate cytidylyltransferase KpsU SWALL:KSU5_ECOLI (SWALL:P42216) (245 aa) fasta scores: E(): 5.4e-28, 40.83% id in 240 aa, and to Chlamydia muridarum 3-deoxy-manno-octulosonate cytidylyltransferase KdsB or tc0454 SWALL:KDSB_CHLMU (SWALL:Q9PKL1) (254 aa) fasta scores: E(): 8.9e-64, 68.14% id in 248 aa 3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	similar to BR0038, 3-deoxy-manno-octulosonate cytidylyltransferase KdsB, 3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	Putative 3-deoxy-manno-octulosonate cytidylyltransferase	putative 3-deoxy-manno-octulosonate cytidylyltransferase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme 3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase	
CHLTR00186	CTP synthase	CTP synthase	CTP synthase	CTP synthase	PyrG	CTP synthetase	CTP synthase	CTP synthase	CTP synthase	conserved gene CTP synthase PyrG	CTP synthase	CTP synthase	identified by match to protein family HMM PF00117; match to protein family HMM TIGR00337 CTP synthase	CTP synthase	CTP synthase	CTP synthetase	identified by match to protein family HMM PF00117; match to protein family HMM PF06418; match to protein family HMM TIGR00337 CTP synthase	CTP synthase	CTP synthetase	CTP synthase	CTP synthase	CTP synthase	CTP synthase	identified by match to protein family HMM PF00117; match to protein family HMM TIGR00337 CTP synthase	CTP synthase	CTP synthase	CTP synthase	Mb1725, pyrG, len: 586 aa. Equivalent to Rv1699, len: 586 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 586 aa overlap). pyrG, CTP synthase (EC 6.3.4.2) highly similar to many e.g. PYRG_ECOLI|P08398 ctp synthase from Escherichia coli (544 aa), FASTA scores: opt: 1786, E():0, (51.8% identity in 548 aa overlap).  Contains PS00442 Glutamine amidotransferases class-I active site. CTP synthase pyrG	InterProMatches:IPR004468; Molecular Function: CTP synthase activity (GO:0003883), Biological Process: pyrimidine nucleotide biosynthesis (GO:0006221) CTP synthetase	
CHLTR00187	Putative Holliday junction resolvase	identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250 conserved hypothetical protein TIGR00250	identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250 conserved hypothetical protein TIGR00250	Putative Holliday junction resolvase	Putative Holliday junction resolvase	Holliday junction resolvase protein	Putative Holliday junction resolvase	Mb2584c, -, len: 170 aa. Equivalent to Rv2554c, len: 170 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 170 aa overlap). Conserved hypothetical protein, equivalent to Q9CCS9|ML0513 HYPOTHETICAL PROTEIN from Mycobacterium leprae (184 aa), FASTA scores: opt: 701, E(): 2e-34, (72.05% identity in 161 aa overlap). Also highly similar to Q9KXQ0|SC9C5.24c HYPOTHETICAL 17.7 KDA PROTEIN from Streptomyces coelicolor (167 aa), FASTA scores: opt: 461, E(): 2.3e-20, (54.65% identity in 150 aa overlap); and similar to other hypothetical proteins e.g. Q9KDE4 from Bacillus halodurans (140 aa), FASTA scores: opt: 291, E(): 1.9e-10, (38.7% identity in 137 aa overlap); P74662|SLL1547 from Synechocystis sp. strain PCC 6803 (152 aa), FASTA scores: opt: 290, (36.55% identity in 145 aa overlap); Q52673|YQGF_RHOCA from Rhodobacter capsulatus (Rhodopseudomonas capsulata) (159 aa), FASTA scores: opt: 246, E(): 8.4e-08, (34.8% identity in 135 aa overlap); etc. CONSERVED HYPOTHETICAL PROTEIN	holliday junction resolvase	Putative Holliday junction resolvase	Similar to Chlamydophila caviae putative holliday junction resolvase cca00598 SWALL:RUVX_CHLCV (SWALL:Q822T1) (163 aa) fasta scores: E(): 1.7e-43, 81.75% id in 148 aa, and to Aquifex aeolicus putative holliday junction resolvase aq_1498 SWALL:RUVX_AQUAE (SWALL:O67469) (131 aa) fasta scores: E(): 2.8e-09, 40% id in 135 aa, and to Thermoanaerobacter tengcongensis putative holliday junction resolvase tte1250 SWALL:RUVX_THETN (SWALL:Q8R5S9) (139 aa) fasta scores: E(): 3.5e-09, 36.09% id in 133 aa putative Holliday junction resolvase	similar to BRA0597, conserved hypothetical protein TIGR00250 conserved hypothetical protein TIGR00250	Putative Holliday junction resolvase	Putative Holliday junction resolvase	conserved hypothetical protein	identified by Glimmer2; putative conserved hypothetical protein TIGR00250	Ortholog of S. aureus MRSA252 (BX571856) SAR1695 conserved hypothetical protein	conserved hypothetical protein	conserved hypothetical protein similar to NP_965963.1 hypothetical protein	Similar to Bacteroides thetaiotaomicron putative holliday junction resolvase BT0419 SWALL:RUVX_BACTN (SWALL:Q8AAP5) (138 aa) fasta scores: E(): 6e-41, 89.13% id in 138 aa, and to Porphyromonas gingivalis W83 hypothetical protein PG2202 SWALL:AAQ67144 (EMBL:AE017179) (138 aa) fasta scores: E(): 7.3e-27, 61.94% id in 134 aa, and to Streptococcus mutans putative holliday junction resolvase SMU.2078C SWALL:RUVX_STRMU (SWALL:Q8DRX8) (139 aa) fasta scores: E(): 6.4e-12, 36.49% id in 137 aa putative Holliday junction resolvase	DNA integration/recombination/invertion protein	Putative Holliday junction resolvase	RNase H-like ribonuclease	putative Hollyday junction resolvase	similar to unknown protein	Similar to Bacillus subtilis hypothetical protein YrrK SW:YRRK_BACSU (O34634) (138 aa) fasta scores: E(): 2.5e-29, 58.696% id in 138 aa, and to Bacillus halodurans hypothetical protein BH1269 TR:Q9KDE4 (EMBL:AP001511) (140 aa) fasta scores: E(): 3.8e-27, 60.000% id in 135 aa conserved hypothetical protein	Similar to predicted endonuclease involved in recombination Conserved hypothetical protein	identified by similarity to GB:AAM80404.1; match to protein family HMM PF03652; match to protein family HMM TIGR00250 conserved hypothetical protein TIGR00250	Conserved hypothetical protein 250	
CHLTR00188	Glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	Mb1482c, zwf2, len: 514 aa. Equivalent to Rv1447c, len: 514 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 514 aa overlap). Probable zwf2 (ZWF), Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49), highly similar to many e.g. G6PD_SYNY3|P73411 Synechocystis sp.  (509 aa), FASTA scores: opt: 1578, E(): 0, (46.8% identity in 509 aa overlap). Also similar to Mycobacterium tuberculosis Rv1121, zwf glucose-6-phosphate 1-dehydrogenase. Contains PS00069 Glucose-6-phosphate dehydrogenase active site. M. tuberculosis has two genes for ZWF. This one looks like a classical ZWF. BELONGS TO THE GLUCOSE-6-PHOSPHATE DEHYDROGENASE FAMILY. PROBABLE GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE ZWF2 (G6PD)	InterProMatches:IPR001282; Molecular Function: glucose-6-phosphate 1-dehydrogenase activity (GO:0004345), Biological Process: glucose metabolism (GO:0006006) glucose-6-phosphate 1-dehydrogenase	glucose-6-phosphate 1-dehydrogenase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark glucose-6-phosphate 1-dehydrogenase	COG0364 Glucose-6-phosphate 1-dehydrogenase glucose-6-p 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	Similar to many including: Anabaena sp.  glucose-6-phosphate 1-dehydrogenase Zwf or all4019 SWALL:G6PD_ANASP (SWALL:P48992) (509 aa) fasta scores: E(): 4e-87, 44.48% id in 499 aa and Synechocystis sp.  glucose-6-phosphate 1-dehydrogenase zwf or slr1843 SWALL:G6PD_SYNY3 (SWALL:P73411) (509 aa) fasta scores: E(): 3.2e-89, 44.98% id in 498 aa glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	glucose-6-phosphate 1-dehydrogenase	Ortholog of S. aureus MRSA252 (BX571856) SAR1582 putative glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate dehydrogenase	identified by match to protein family HMM PF00479; match to protein family HMM PF02781; match to protein family HMM TIGR00871 glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase	glucose-6-phosphate 1-dehydrogenase	G6PD; Similar to: HI0558, G6PD_HAEIN glucose-6-phosphate 1-dehydrogenase	CHR34_tmp.0080, predicted protein, len = 563 aa, probably glucose-6-phosphate dehydrogenase; predicted pI = 5.7141; good similarity to Q8I911, glucose-6-phosphate dehydrogenase (EC 1.1.1.49) (562 aa, Leishmania amazonensis, EMBL: AY099298, AAM64228); Fasta scores: E():0, 92.171% identity (92.171% ungapped) in 562 aa overlap, (aa 1-562 of CHR34_tmp.0080, aa 1-562 of Q8I911) glucose-6-phosphate dehydrogenase	Similar to Rhizobium meliloti glucose-6-phosphate 1-dehydrogenase Zwf or r00704 or SMC03070 SWALL:G6PD_RHIME (SWALL:Q9Z3S2) (491 aa) fasta scores: E(): 1.2e-82, 43.41% id in 486 aa, and to Bacteroides thetaiotaomicron glucose-6-phosphate 1-dehydrogenase BT1221 SWALL:AAO76328 (EMBL:AE016931) (498 aa) fasta scores: E(): 2.3e-181, 84.13% id in 498 aa, and to Vibrio cholerae glucose-6-phosphate 1-dehydrogenase vca0896 SWALL:Q9KL52 (EMBL:AE004417) (501 aa) fasta scores: E(): 2.6e-111, 54.67% id in 503 aa putative glucose-6-phosphate 1-dehydrogenase	Glucose-6-phosphate 1-dehydrogenase Zwf protein	
CHLTR00190	DNA Pol III Gamma and Tau	Weakly similar to many including: Escherichia coli DNA polymerase III subunit Tau DnaX or DnaZ SWALL:DP3X_ECOLI (SWALL:P06710) (643 aa) fasta scores: E(): 5e-05, 27.14% id in 210 aa and Wigglesworthia glossinidia brevipalpis DNA polymerase III subunit Tau wigbr5250 SWALL:Q8D230 (EMBL:AB063522) (365 aa) fasta scores: E(): 1.7e-06, 34.28% id in 140 aa. Note also similar to CAB327 28.151% id in 238 aa overlap which is thought to encode DNA polymerase III subunit Tau and gamma putative DNA polymerase III subunit	probable DNA polymerase III delta prime subunit	Ortholog of S. aureus MRSA252 (BX571856) SAR0485 putative DNA polymerase III, delta' subunit	probable DNA polymerase III, delta prime subunit	Similar to Bacillus subtilis DNA polymerase III, delta' subunit protein HolB SW:HOLB_BACSU (P37540) (329 aa) fasta scores: E(): 3.3e-25, 31.699% id in 306 aa, and to Bacillus halodurans DNA polymerase III delta' subunit HolB TR:Q9KGL7 (EMBL:AP001507) (328 aa) fasta scores: E(): 9.1e-23, 30.421% id in 309 aa putative DNA polymerase III, delta' subunit	identified by similarity to EGAD:13071 DNA polymerase III, delta prime subunit, putative	DNA polymerase III delta subunit	probable DNA polymerase III delta prime subunit	DNA polymerase III gamma/tau EC 2.7.7.7	DNA polymerase III subunit gamma/tau	Probable DNA polymerase III delta prime subunit	DNA-directed DNA polymerase KEGG: sav:SAV0484 probable DNA polymerase III delta prime subunit	DNA-directed DNA polymerase	DNA polymerase III delta subunit	DNA-directed DNA polymerase III delta' subunit	DNA polymerase III subunit gamma/tau	DNA polymerase III subunit gamma/tau	DNA polymerase III, delta prime subunit KEGG: cth:Cthe_2105 DNA polymerase III, delta prime subunit	DNA polymerase III subunit gamma/tau	DNA polymerase III, delta prime subunit, putative	Putative uncharacterized protein	
CHLTR00189	6-phosphogluconolactonase	conserved gene 6-phosphogluconolactonase	similar to 6-phosphogluconolactonase hypothetical protein	6-phosphogluconolactonase	DevB	6-phosphogluconolactonase protein	6-phosphogluconolactonase	Mb1480c, devB, len: 247 aa. Equivalent to Rv1445c, len: 247 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 247 aa overlap). Possible devB (PGL), 6-phosphogluconolactonase (EC 3.1.1.31), belongs to a different family to the upstream gene zwf2. Similar to e.g. DEVB_ANASP|P46016 putative glucose-6-phosphate 1-dehydrogenase (239 aa), FASTA scores: opt: 439, E(): 2.6e-20, (34.0% identity in 247 aa overlap). BELONGS TO THE GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE FAMILY. 6-PHOSPHOGLUCONOLACTONASE SUBFAMILY. PROBABLE 6-PHOSPHOGLUCONOLACTONASE DEVB (6PGL)	Similar in the C-terminal regiopns to sveral including: Actinobacillus actinomycetemcomitans 6-phosphogluconolactonase Pgl or DevB SWALL:6PGL_ACTAC (SWALL:P70715) (232 aa) fasta scores: E(): 9.7e-15, 33.33% id in 201 aa and Haemophilus influenzae 6-phosphogluconolactonase Pgl or DevB SWALL:6PGL_HAEIN (SWALL:Q57039) (232 aa) fasta scores: E(): 3.2e-16, 34.34% id in 198 aa probable 6-phosphogluconolactonase	similar to BRA0779, 6-phosphogluconolactonase Pgl, 6-phosphogluconolactonase	6-phosphogluconolactonase	Putative 6-phosphogluconolactonase (DevB, Pgl)	6-phosphogluconolactonase	6-phosphogluconolactonase	6PGL; Similar to: HI0556, 6PGL_HAEIN 6-phosphogluconolactonase	LmjF26.2700, predicted protein, len = 268 aa, probably 6-phosphogluconolactonase; predicted pI = 5.5723; very good similarity to Q869B6, 6-phosphogluconolactonase in Leishmania mexicana; contains a possible glucosamine-6-phosphate isomerases/6-phosphogluconolactonase domain 6-phosphogluconolactonase	Similar to Treponema pallidum 6-phosphogluconolactonase Pgl or DevB or tp0477 SWALL:6PGL_TREPA (SWALL:O83490) (241 aa) fasta scores: E(): 7.1e-28, 40.8% id in 223 aa, and to Bacteroides thetaiotaomicron 6-phosphogluconolactonase BT1220 SWALL:AAO76327 (EMBL:AE016931) (229 aa) fasta scores: E(): 2.7e-69, 73.89% id in 226 aa, and to Vibrio parahaemolyticus DevB protein vp1709 SWALL:BAC59972 (EMBL:AP005079) (238 aa) fasta scores: E(): 8.1e-29, 40.69% id in 231 aa putative 6-phosphogluconolactonase	6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase NagB protein	6-Phosphogluconolactonase	6-phosphogluconolactonase	6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase	GDH/6PGL endoplasmic bifunctional protein precursor [Includes: Glucose 1-dehydrogenase (EC 1.1.1.47) (Hexose-6- phosphate dehydrogenase); 6- phosphogluconolactonase (EC 3.1.1.31) (6PGL)].,Oxidizes glucose-6-phosphate and glucose as well as other hexose-6-phosphates. 6-phosphogluconolactonase	identified by similarity to GB:AAD22666.1; match to protein family HMM TIGR01198 6-phosphogluconolactonase	6-phosphogluconolactonase	6-phosphogluconolactonase	6-phosphogluconolactonase	6-phosphogluconolactonase	6-phosphogluconolactonase	6-phosphogluconolactonase:Glucosamine/galactosami ne-6-phosphate isomerase	
CHLTR00191	Thymidylate kinase	Thymidylate kinase	thymidylate kinase	Thymidylate kinase	Thymidylate kinase	thymidylate kinase	Thymidylate kinase	Thymidylate kinase	Similar to thymidylate kinase hypothetical protein	conserved gene thymidylate kinase	Similar to thymidylate kinase hypothetical protein	Thymidylate kinase	identified by similarity to EGAD:20762; match to protein family HMM PF02223; match to protein family HMM TIGR00041 thymidylate kinase	Thymidylate kinase	Thymidylate kinase	thymidylate kinase	identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041 thymidylate kinase	Thymidylate kinase	thymidylate kinase	Thymidylate kinase	Thymidylate kinase	Thymidylate kinase	Thymidylate kinase	Thymidylate kinase	InterProMatches:IPR000062; Molecular Function: thymidylate kinase activity (GO:0004798), Molecular Function: ATP binding (GO:0005524), Biological Process: dTDP biosynthesis (GO:0006233), Biological Process: dTTP biosynthesis (GO:0006235) thymidylate kinase	thymidylate kinase	Thymidylate kinase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark thymidylate kinase	COG0125 Thymidylate kinase thymidylate (dTMP) kinase	
CHLTR00192	DNA gyrase subunit A	DNA gyrase/topoisomerase IV, subunit A	DNA gyrase subunit A	GyrA protein	DNA gyrase subunit A	DNA gyrase subunit A	Probable dna gyrase (Subunit a)(Type II topoisomerase) protein	DNA gyrase subunit A	DNA gyrase, subunit A, type II topoisomerase	conserved gene DNA gyrase, A subunit	DNA gyrase, subunit A, type II topoisomerase	DNA gyrase, A subunit	identified by similarity to SP:P20831; match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063 DNA gyrase, A subunit	DNA gyrase subunit A	DNA gyrase subunit A	DNA gyrase A subunit	identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063 DNA gyrase, A subunit	DNA gyrase, subunit A	DNA gyrase A subunit	DNA gyrase subunit A	DNA gyrase subunit A	DNA Gyrase Subunit A	DNA gyrase A subunit	identified by similarity to SP:Q03470; match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063 DNA gyrase, A subunit	GyrA	DNA gyrase, A subunit	DNA gyrase subunit A	Mb0006, gyrA, len: 838 aa. Equivalent to Rv0006, len: 838 aa, from Mycobacterium tuberculosis strain H37Rv, (99.5% identity in 838 aa overlap). gyrA, DNA gyrase subunit A (EC 5.99.1.3) (see citations below), equivalent, except in N-terminus, to other Mycobacterial DNA GYRASES SUBUNIT A e.g. Q57532|GYRA_MYCLE|T10006 from Mycobacterium leprae (1273 aa); P48354|GYRA_MYCSM from Mycobacterium smegmatis (842 aa); etc. Also highly similar to others e.g. P35885|GYRA_STRCO DNA GYRASE SUBUNIT A from Streptomyces coelicolor (864 aa); NP_346654.1|NC_003030 from Clostridium acetobutylicum (830 aa); NP_387888.1|NC_000964 from Bacillus subtilis (821 aa); etc. Contains PS00018 EF-hand calcium-binding domain. DNA GYRASE (SUBUNIT A) GYRA (DNA TOPOISOMERASE (ATP-HYDROLYSING)) (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE)	InterProMatches:IPR005743; initation of replication cycle and DNA elongation, Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA topoisomerase (ATP-hydrolyzing) activity (GO:0003918), Cellular Component: chromosome (GO:0005694), Biological Process: DNA topological change (GO:0006265), Biological Process: DNA unwinding DNA gyrase (subunit A)	
CHLTR00193	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase, subunit B (type II topoisomerase)	conserved gene DNA gyrase subunit B	DNA gyrase, subunit B (type II topoisomerase)	DNA gyrase subunit B	identified by similarity to SP:P20832; match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059 DNA gyrase, B subunit	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase B subunit	identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059 DNA gyrase, B subunit	DNA gyrase subunit B	DNA gyrase B subunit	DNA gyrase subunit B	DNA gyrase subunit B	DNA Gyrase Subunit B	DNA gyrase subunit B	identified by similarity to SP:P55992; match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059 DNA gyrase, B subunit	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	Mb0005, gyrB, len: 714 aa. Equivalent to Rv0005, len: 714 aa, from Mycobacterium tuberculosis strain H37Rv, (99.9% identity in 714 aa overlap). gyrB, DNA gyrase subunit B (EC 5.99.1.3) (see citations below), equivalent, except in N-terminus, to other Mycobacterial DNA GYRASES SUBUNIT B e.g. T10005 from Mycobacterium leprae (697 aa); Q9L7L3|GYRB_MYCPA from Mycobacterium avium subsp.  paratuberculosis (677 aa) (has its N-terminus shorter); P48355|GYRB_MYCSM from Mycobacterium smegmatis (675 aa); etc. Also highly similar to others e.g. T10969 from Streptomyces coelicolor (686 aa); P50075|GYBS_STRSH from Streptomyces spheroides (684 aa); etc. Contains PS00177 DNA topoisomerase II signature. BELONGS TO THE TYPE II TOPOISOMERASE FAMILY. DNA GYRASE (SUBUNIT B) GYRB (DNA TOPOISOMERASE (ATP-HYDROLYSING)) (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE)	InterProMatches:IPR000565; initation of replication cycle and DNA elongation,Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA topoisomerase (ATP-hydrolyzing) activity (GO:0003918), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA metabolism (GO:0006259), Biological Process: DNA topological DNA gyrase (subunit B)	
CHLTR00194	Putative uncharacterized protein	conserved hypothetical protein	hypothetical cytosolic protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00195	Putative uncharacterized protein	Candidate inclusion membrane protein	Candidate inclusion membrane protein	
CHLTR00196	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Similar to queuine tRNA-ribosyltransferase hypothetical protein	conserved gene queuine/archaeosine tRNA-ribosyltransferase	Similar to queuine tRNA-ribosyltransferase hypothetical protein	Queuine tRNA-ribosyltransferase	identified by match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449 queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	tRNA-guanine transglycosylase	Queuine tRNA-ribosyltransferase	queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase)	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	InterProMatches:IPR004803, IPR002616; Molecular Function: queuine tRNA-ribosyltransferase activity (GO:0008479), Biological Process: queuosine biosynthesis (GO:0008616), Biological Process: tRNA modification (GO:0006400), Molecular Function: queuine tRNA-ribosyltransferase activity (GO:0008479 tRNA-guanine transglycosylase	queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	tRNA-guanine transglycosylase	Queuine/archaeosine tRNA-ribosyltransferase	similar to Salmonella typhi CT18 queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase	Similar to Thermoanaerobacter tengcongensis queuine tRNA-ribosyltransferase Tgt or TTE1183 SWALL:TGT_THETN (SWALL:Q8RAM9) (375 aa) fasta scores: E(): 2.3e-36, 38.83% id in 376 aa, and to Bacillus subtilis queuine tRNA-ribosyltransferase Tgt or BSU27710 SWALL:TGT_BACSU (SWALL:O32053) (381 aa) fasta scores: E(): 1.6e-30, 33.6% id in 375 aa putative queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	
CHLTR00197	Mg++ Transporter	CBS domain:Divalent cation transporter	Mg2 transporter	identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400 magnesium transporter	Probable magnesium transporter	Mg2+ transporter	MG2+ TRANSPORT PROTEIN	Mg/Co/Ni transporter MgtE	Magnesium transporter	similar to Mg2+ transporter; Biological Process: cation transport (GO:0006812), Molecular Function: cation transporter activity (GO:0008324) Divalent cation transporter	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark Mg++ transporter	Mg/Co/Ni transporter MgtE	Similar to many putative membrane transport proteins including: Bacillus halodurans magnesium transporter bh3224 SWALL:Q9K7Y3 (EMBL:AP001518) (454 aa) fasta scores: E(): 3e-33, 28.47% id in 460 aa, and to Chlamydophila caviae magnesium transporter MgtE or cca00496 SWALL:Q823C9 (EMBL:AE016995) (470 aa) fasta scores: E(): 8e-171, 98.5% id in 469 aa putative magnesium transporter	Mg++ transporter	hypothetical protein, similar to Mg2+ transporter	Putative divalent cation (Mg++/Co++/Ni++) transport protein	Hypothetical inner membrane protein	Ortholog of S. aureus MRSA252 (BX571856) SAR0976 putative divalent cation transport protein	hypothetical protein, similar to Mg2+ transporter	MgtE family, putative magnesium transport protein	Similar to rp||mgtE rc||mgtE; Ortholog to ERGA_CDS_04720 Magnesium transporter	COG2239 Mg/Co/Ni transporter	Mg(2+) transporter MgtE	Magnesium transporter	Mg/Co/Ni transporter MgtE (contains CBS domain)	Mg++ transporter	identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400 magnesium transporter	hypothetical protein, similar to Mg2+ transporter	Similar to rp||mgtE rc||mgtE; Ortholog to ERWE_CDS_04820 Magnesium transporter	
CHLTR00198	Putative uncharacterized protein	conserved hypothetical protein	hypothetical membrane spanning protein	Putative integral membrane protein	Putative integral membrane protein	Putative integral membrane protein	
CHLTR00199	Putative uncharacterized protein	Candidate inclusion membrane protein	Candidate inclusion membrane protein	
CHLTR00200	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Similar to O-sialoglycoprotein endopeptidase hypothetical protein	conserved gene O-sialoglycoprotein endopeptidase	Similar to O-sialoglycoprotein endopeptidase hypothetical protein	Probable O-sialoglycoprotein endopeptidase	identified by match to protein family HMM PF00814; match to protein family HMM TIGR00329 metalloendopeptidase, putative, glycoprotease family	Probable O-sialoglycoprotein endopeptidase	O-sialoglycoprotein endopeptidase	probable o-sialoglycoprotein endopeptidase	identified by similarity to SP:P05852; match to protein family HMM PF00814; match to protein family HMM TIGR00329 O-sialoglycoprotein endopeptidase, putative	Probable O-sialoglycoprotein endopeptidase	glycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	O-sialoglycoprotein endopeptidase	O-SIALOGLYCOPROTEIN ENDOPEPTIDASE	Probable O-sialoglycoprotein endopeptidase	identified by similarity to SP:P40731; match to protein family HMM PF00814; match to protein family HMM TIGR00329 O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	O-sialoglycoprotein endopeptidase protein	Probable O-sialoglycoprotein endopeptidase	Mb3453c, -, len: 344 aa. Equivalent to Rv3419c, len: 344 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 344 aa overlap). Probable gcp, glycoprotease (EC 3.4.24.57), equivalent to P37969|GCP_MYCLE|GCP|ML0379|U229E|U1620c|B229_C3_246|B1620 _ C3_226 PROBABLE GLYCOPROTEASE from Mycobacterium leprae (351 aa), FASTA scores: opt: 1898, E(): 2.4e-101, (86.1% identity in 345 aa overlap). Highly similar to others e.g.  O86793|GCP_STRCO|GCP|SC6G4.30 from Streptomyces coelicolor (374 aa), FASTA scores: opt: 1282, E(): 4.1e-66, (60.45% identity in 344 aa overlap); Q9WXZ2|TM0145 from Thermotoga maritima (327 aa), FASTA scores: opt: 867, E(): 1.9e-42, (45.4% identity in 337 aa overlap); P05852|GCP_ECOLI|B3064 from Escherichia coli strain K12 (337 aa), FASTA scores: opt: 838, E(): 9e-41, (46.55% identity in 346 aa overlap); etc. Shows some similarity to Q50707|YY21_MYCTU|Rv3421c|MTCY78.08 (33.9% identity in 127 aa overlap). Contains PS01016 Glycoprotease family signature. BELONGS TO PEPTIDASE FAMILY M22; ALSO KNOWN AS THE GLYCOPROTEASE FAMILY. PROBABLE O-SIALOGLYCOPROTEIN ENDOPEPTIDASE GCP (GLYCOPROTEASE)	InterProMatches:IPR000905; Biological Process: proteolysis and peptidolysis (GO:0006508), Molecular Function: O-sialoglycoprotein endopeptidase activity (GO:0008450) O-sialoglycoprotein endopeptidase	
CHLTR00201	Oligopeptide Binding Protein	Oligopeptide-binding protein OppA	Dipeptide-binding protein dppE	Oligopeptide transport system binding protein precursor	Oligopeptide transport system binding protein precursor	
CHLTR00202	Oligopeptide Permease	ABC transporter of peptides	OppB oligopeptide transport system permease protein	Oligopeptide transport system membrane permease	Oligopeptide transport system membrane permease	Oligopeptide transport system membrane permease	
CHLTR00203	Oligopeptide Permease	Oligopeptide ABC trasporter permease protein	IPR000515: Binding-protein-dependent transport systems inner membrane component ABC superfamily (membrane), oligopeptide transport protein	similar to Salmonella typhimurium ABC superfamily (membrane), oligopeptide transport protein ABC superfamily (membrane), oligopeptide transport protein	Similar to Bacillus subtilis oligopeptide transport system permease protein OppC or spo0kc or bsu11450 SWALL:OPPC_BACSU (SWALL:P24139) (305 aa) fasta scores: E(): 2.8e-39, 39.03% id in 269 aa, and to Chlamydophila caviae peptide ABC transporter, permease protein OppC_1 or cca00603 SWALL:Q822S6 (EMBL:AE016996) (302 aa) fasta scores: E(): 1.1e-103, 93.7% id in 286 aa, and to Thermoanaerobacter tengcongensis ABC-type dipeptide/oligopeptide/nickel transport systems, permease components DppC4 or tte0613 SWALL:Q8RC35 (EMBL:AE013030) (305 aa) fasta scores: E(): 1.3e-40, 41.44% id in 263 aa putative peptide ABC transport system permease protein	Oligopeptide ABC transporter, permease protein	Oligopeptide transport system permease protein oppC	oligopeptide ABC transporter, permease	similar to Salmonella oligopeptide transport permease protein; Code: EP; COG: COG1173 oligopeptide transport permease protein-like protein	similar to Salmonella oligopeptide transport permease protein; Code: EP; COG: COG1173 OppC	oligopeptide transport system permease protein	putative transmembrane component of ABC transporter protein similarity:fasta; with=UniProt:OPPC_ECOLI (EMBL:ECD763); Escherichia coli O157:H7.; oppC; Oligopeptide transport system permease protein oppC.; length=302; id 52.443; 307 aa overlap; query 1-305; subject 1-302	ABC transporter of peptides	Binding-protein-dependent transport systems inner membrane component	Oligopeptide transport system permease protein OppC	binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component KEGG: gka:GK0813 oligopeptide ABC transporter (permease)	Binding-protein-dependent transport systems inner membrane component	Oligopeptide ABC transporter, permease protein	hypothetical protein similarity to COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components(Evalue: 5E-66)	Oligopeptide ABC transporter, permease protein	ABC-type dipeptide/oligopeptide/nickel transport systems, permease component	binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component KEGG: jan:Jann_3052 binding-protein-dependent transport systems inner membrane component	ABC-type dipeptide/oligopeptide/nickel transport system, permease component	Dipeptide transport system permease protein dppC	putative oligopeptide ABC transporter, permease protein identified by similarity to SP:P24139; match to protein family HMM PF00528	OppC oligopeptide transport system permease protein	Oligopeptide transport system permease protein OppC	Binding-protein-dependent transport systems inner membrane component	Oligopeptide transport permease protein	
CHLTR00204	Oligopeptide Transport ATPase	transcript_id=ENSTBET00000009631	Oligopeptide/dipeptide ABC transporter, ATPase subunit	OppD oligopeptide transport ATP-binding protein	Oligopeptide transport ATP-binding protein	Oligopeptide transport system ATP-binding protein	Oligopeptide transport system ATP-binding protein	Oligopeptide/dipeptide ABC transporter, ATPase subunit	Oligopeptide transport system ATP-binding protein	
CHLTR00205	Oligopeptide Transport ATPase	putative transporter component similarity:fasta; SWALL:AAQ87143 (EMBL:AY316746); Rhizobium sp.; transporter; orfnames=rngr00118;; length 328 aa; 326 aa overlap; query 1-326 aa; subject 1-326 aa	OppF oligopeptide transport ATP-binding protein	Putative ABC transporter ATP-binding	Oligopeptide transport system ATP-binding protein	Oligopeptide transport system ATP-binding protein	Oligopeptide ABC transporter ATP binding protein	
CHLTR00206	Uncharacterized protein CT_203	conserved hypothetical protein	protein of unknown function DUF1186 PFAM: SEC-C motif domain protein; protein of unknown function DUF1186 KEGG: ana:alr7019 hypothetical protein	hypothetical membrane associated protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00207	Dicarboxylate Translocator	identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785 anion transporter family protein	2-oxoglutarate/malate translocator-like protein	Molecular Function: transporter activity (GO:0005215), Biological Process: sodium ion transport (GO:0006814), Cellular Component: membrane (GO:0016020) Sodium/sulphate symporter	cation transport protein 2-oxoglutarate-malate translocator	Similar to Bacillus subtilis YflS protein SWALL:O34726 (EMBL:Z99108) (478 aa) fasta scores: E(): 1e-99, 52.25% id in 465 aa, and to Chlamydophila caviae sodium:sulfate symporter family protein cca00607 SWALL:Q822S2 (EMBL:AE016996) (470 aa) fasta scores: E(): 1.2e-175, 94.24% id in 469 aa putative sodium:sulfate symporter	2-oxoglutarate/malate translocator homolog	Putative integral membrane transport protein	Ortholog of S. aureus MRSA252 (BX571856) SAR2775 sodium:sulfate symporter family protein	2-oxoglutarate/malate translocator homolog	Di- and tricarboxylate transporters CitT protein	2-oxoglutarate/malate translocator homologue	Sodium/sulphate symporter	Similar to the C-terminal region of Spinacia oleracea 2-oxoglutarate/malate translocator, chloroplast precursor SODiT1 SW:SOT1_SPIOL (Q41364) (569 aa) fasta scores: E(): 4.1e-81, 46.03% id in 467 aa, and to the full length Bacillus subtilis hypothetical protein YflS TR:O34726 (EMBL:Z99108) (478 aa) fasta scores: E(): 3.4e-100, 54.77% id in 471 aa sodium:sulfate symporter family protein	Best Blastp Hit: pir||A81194 C4-dicarboxylate transporter NMB0470 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225698|gb|AAF40907.1| (AE002404) C4-dicarboxylate transporter [Neisseria meningitidis MC58] COG0471 Cation transporters conserved hypothetical protein	identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785 anion transporter family protein	similar to gi|49487472|ref|YP_044693.1| [Staphylococcus aureus subsp. aureus MSSA476], percent identity 76 in 471 aa, BLASTP E(): 0.0 putative di-and tricarboxylate transporter	identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785 anion transporter family protein	2-oxoglutarate/malate translocator identified by match to protein family HMM PF00939; match to protein family HMM PF06808; match to protein family HMM TIGR00785	2-oxoglutarate-malate translocator	anion transporter	2-oxoglutarate/malate translocator COG0471 [P] Di- and tricarboxylate transporters	dicarboxylase translocator sodium:sulfate symporter family protein	2-oxoglutarate/malate translocator	Arsenic transporter family protein	sodium, sulfate symporter, putative	anion transporter	Di-and tricarboxylate transporter	anion transporter TIGRFAM: anion transporter PFAM: sodium/sulphate symporter KEGG: bsu:BG12951 similar to 2-oxoglutarate/malate translocator	
CHLTR00208	Fructose-6-P Phosphotransferase	pyrophosphate--fructose 6-phosphate 1-phosphotransferase beta chain	pyrophosphate--fructose 6-phosphate 1-phosphotransferase	phosphofructokinase PFAM: phosphofructokinase KEGG: tde:TDE1550 phosphofructokinase, pyrophosphate-dependent	6-phosphofructokinase PFAM: phosphofructokinase KEGG: sru:SRU_2111 phosphofructokinase subfamily	Diphosphate--fructose-6-phosphate 1- phosphotransferase	6-phosphofructokinase	Pyrophosphate--fructose 6-phosphate 1- phosphotransferase	Pyrophosphate--fructose 6-phosphate 1- phosphotransferase	6-phosphofructokinase	Phosphofructokinase	Pyrophosphate--fructose 6-phosphate 1- phosphotransferase, beta subunit	6-phosphofructokinase	Diphosphate/fructose-6-phosphate 1- phosphotransferase	Pyrophosphate--fructose 6-phosphate 1- phosphotransferase	6-phosphofructokinase, pyrophosphate-dependent	Putative diphosphate--fructose-6-phosphate 1- phosphotransferase	
CHLTR00209	Predicted acyltransferase family protein	acyltransferase	alpha/beta hydrolase	Hydrolase of the alpha/beta superfamily-like protein	Putative uncharacterized protein	Putative uncharacterized protein	Alpha/beta superfamily hydrolase	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase -like protein	Hydrolases of the alpha/beta superfamily	Dienelactone hydrolase	Putative hydrolase	Putative uncharacterized protein	PGAP1 family protein	Putative uncharacterized protein	Putative uncharacterized protein	Dienelactone hydrolase family protein	PGAP1 family protein KEGG: pjd:Pjdr2_0873 PGAP1 family protein	Putative hydrolase	
CHLTR00210	Fructose-6-P Phosphotransferase	pyrophosphate--fructose 6-phosphate 1-phosphotransferase beta chain	pyrophosphate--fructose 6-phosphate 1-phosphotransferase	Pyrophosphate--fructose 6-phosphate 1- phosphotransferase	Pyrophosphate--fructose 6-phosphate 1- phosphotransferase	Pyrophosphate--fructose 6-phosphate 1- phosphotransferase	
CHLTR00211	KdtA protein	Probable 3-deoxy-d-manno-octulosonic-acid transferase transmembrane protein	3-deoxy-D-manno-octulosonic-acid transferase	3-Deoxy-D-manno-oct-2-ulosonic acid transferase	conserved gene 3-deoxy-D-manno-oct-2-ulosonic acid transferase	3-Deoxy-D-manno-oct-2-ulosonic acid transferase	identified by similarity to SP:P23282; match to protein family HMM PF04413 3-deoxy-D-manno-octulosonic acid transferase	Probable 3-deoxy-D-manno-octulosonic-acid transferase	3-deoxy-D-manno-octulosonic acid transferase	identified by similarity to SP:P23282; match to protein family HMM PF04413 3-deoxy-D-manno-octulosonic-acid transferase	3-deoxy-D-manno-octulosonic acid transferase protein	3-deoxy-D-manno-octulosonic-acid transferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 3-deoxy-D-manno-octulosonic acid transferase	3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)	similar to Salmonella typhi CT18 3-deoxy-D-manno-octulosonic-acid transferase 3-deoxy-D-manno-octulosonic-acid transferase	Identical to previously sequenced Chlamydophila abortus 3-deoxy-D-manno-2-octulosonic acid transferase GseA SWALL:P71136 (EMBL:U72500) (411 aa) fasta scores: E(): 1.6e-169, 100% id in 411 aa, and to Chlamydia psittaci 3-deoxy-D-manno-2-octulosonic acid GseA SWALL:Q06380 (EMBL:X69476) (411 aa) fasta scores: E(): 1.2e-163, 95.37% id in 411 aa, and to Chlamydophila caviae 3-deoxy-D-manno-2-octulosonic acid transferase KdtA or cca00611 SWALL:Q822R8 (EMBL:AE016996) (434 aa) fasta scores: E(): 9.1e-149, 80.18% id in 434 aa. Possible alternative start site at codon 23. 3-deoxy-D-manno-2-octulosonic acid transferase	3-Deoxy-D-manno-octulosonic-acid transferase	similar to BRA0215, 3-deoxy-D-manno-octulosonic-acid transferase KdtA, 3-deoxy-D-manno-octulosonic-acid transferase	3-deoxy-D-manno-octulosonic acid transferase	3-deoxy-d-manno-octulosonic-acid transferase	3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE	3-deoxy-D-manno-octulosonic-acid transferase	3-deoxy-D-manno-octulosonic-acid transferase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme 3-deoxy-D-manno-2-octulosonate transferase	3-deoxy-D-manno-octulosonic-acid transferase	3-deoxy-D-manno-octulosonic-acid transferase	KDO transferase; Similar to: HI0652, KDTA_HAEIN 3-deoxy-D-manno-octulosonic acid transferase	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 3-deoxy-D-manno-octulosonic-acid transferase KdtA or WaaA or B3633 or C4457 or Z5057 or ECS4508 SWALL:KDTA_ECOLI (SWALL:P23282) (425 aa) fasta scores: E(): 6.1e-20, 28.72% id in 369 aa, and to Bacteroides thetaiotaomicron 3-deoxy-D-manno-octulosonic-acid transferase BT2747 SWALL:Q8A456 (EMBL:AE016937) (407 aa) fasta scores: E(): 2.1e-147, 87.46% id in 407 aa 3-deoxy-D-manno-octulosonic-acid transferase	
CHLTR00212	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	leucyl-tRNA synthetase	Leucyl-tRNA synthetase	identified by match to protein family HMM PF00133; match to protein family HMM TIGR00396 leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Mb0042, leuS, len: 969 aa. Equivalent to Rv0041, len: 969 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 969 aa overlap). Probable leucyl-tRNA synthetase (EC 6.1.1.4), equivalent to NP_301156.1|NC_002677|MLCB628_3 leucyl-tRNA synthase from Mycobacterium leprae (972 aa), FASTA score: (83.6% identity in 972 aa overlap); and highly similar to MLCB1770_20 from Mycobacterium leprae (824 aa), FASTA score: (82.8% identity in 824 aa overlap). Also highly similar to others e.g. CAB66249.1|AL136518 leucyl-tRNA synthetase from Streptomyces coelicolor (966 aa); NP_244147.1|NC_002570 leucyl-tRNA synthetase from Bacillus halodurans (806 aa); SYL_BACSU|P36430 leucyl-tRNA synthetase from Bacillus subtilis (804 aa), FASTA scores: opt: 714, E(): 3.1e-38, (43.7% identity in 938 aa overlap); etc. Contains PS00178 Aminoacyl-transfer RNA synthetases class-I signature. BELONGS TO CLASS-I AMINOACYL-TRNA SYNTHETASE FAMILY. PROBABLE LEUCYL-tRNA SYNTHETASE LEUS (LEUCINE--tRNA LIGASE) (LEURS)	InterProMatches:IPR002302; Molecular Function: leucine-tRNA ligase activity (GO:0004823), Molecular Function: ATP binding (GO:0005524), Biological Process: leucyl-tRNA aminoacylation (GO:0006429) leucyl-tRNA synthetase	leucyl-tRNA synthetase	Leucyl-tRNA synthetase	LeuS COG0495 Leucyl-tRNA synthetase leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Similar to Bacillus subtilis leucyl-tRNA synthetase LeuS or bsu30320 SWALL:SYL_BACSU (SWALL:P36430) (804 aa) fasta scores: E(): 1.4e-140, 50.89% id in 835 aa, and to Chlamydophila caviae leucyl-trna synthetase LeuS or cca00612 SWALL:SYL_CHLCV (SWALL:Q822R7) (820 aa) fasta scores: E(): 0, 89.51% id in 820 aa, and to Lactococcus lactis leucyl-tRNA synthetase LeuS or ll0816 SWALL:SYL_LACLA (SWALL:Q9CHB6) (829 aa) fasta scores: E(): 2.3e-168, 50.24% id in 830 aa putative leucyl-tRNA synthetase	Leucyl-tRNA synthetase	leucyl-tRNA synthetase	identified by match to PFAM protein family HMM PF00133 leucyl-tRNA synthetase	Ortholog of S. aureus MRSA252 (BX571856) SAR1843 leucyl-tRNA synthetase	Leucyl-tRNA synthetase	leucyl-tRNA synthetase	Leucyl-tRNA synthetase	best blastp match gb|AAK33273.1| (AE006486) putative leucyl-tRNA synthetase [Streptococcus pyogenes M1 GAS] putative leucyl-tRNA synthetase	
CHLTR00214	UPF0301 protein CT_211	UPF0301 protein NE1668	UPF0301 protein WIGBR1650	UPF0301 protein RSc0675	UPF0301 protein plu1183	Similar to conserved hypothetical protein hypothetical protein	conserved gene transcriptional regulator	Similar to conserved hypothetical protein hypothetical protein	identified by similarity to GB:BAC46757.1; match to protein family HMM PF02622 conserved hypothetical protein	UPF0301 protein CV_3909	UPF0301 protein XF_2228	Transcriptional regulator protein	UPF0301 protein Bfl251	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark transcriptional regulator	IPR003774: Protein of unknown function DUF179 Protein yqgE	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Similar to Pseudomonas aeruginosa transcriptional regulator AlgH or pa0405 SWALL:Q9RQ16 (EMBL:AF137022) (189 aa) fasta scores: E(): 1.4e-10, 31.57% id in 171 aa, and to Chlamydophila caviae transcriptional regulator, putative cca00630 SWALL:Q822P9 (EMBL:AE016996) (189 aa) fasta scores: E(): 2.3e-74, 93.65% id in 189 aa, and to Chlorobium tepidum hypothetical protein Ct0663 SWALL:Q8KEM4 (EMBL:AE012839) (187 aa) fasta scores: E(): 6.9e-23, 37.91% id in 182 aa conserved hypothetical protein	similar to BR0480, conserved hypothetical protein conserved hypothetical protein	UPF0301 protein XAC2918	UPF0301 protein BQ03640	UPF0301 protein YPTB3208	Hypothetical protein	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein	COG1678 putative transcriptional regulator	transcriptional regulator, AlgH	Similar to: HI0304, YQGE_HAEIN conserved hypothetical protein	Similar to Pseudomonas aeruginosa AlgH or pa0405 SWALL:Q9RQ16 (EMBL:AF137022) (189 aa) fasta scores: E(): 8.2e-10, 30% id in 170 aa, and to Bacteroides thetaiotaomicron putative transcriptional regulator BT1078 SWALL:AAO76185 (EMBL:AE016930) (196 aa) fasta scores: E(): 1.8e-63, 80.1% id in 196 aa, and to Chlorobium tepidum hypothetical protein CT0663 SWALL:Q8KEM4 (EMBL:AE012839) (187 aa) fasta scores: E(): 5.6e-19, 34.27% id in 178 aa putative transcriptional regulator	Putative transcriptional regulator Hypothetical protein	UPF0301 protein PP_4995	
CHLTR00213	Glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	Similar to glutamate-1-semialdehyde-2,1-aminomutase hypothetical protein	conserved gene glutamate-1-semialdehyde-2,1-aminomutase	Similar to glutamate-1-semialdehyde-2,1-aminomutase hypothetical protein	glutamate-1-semialdehyde aminomutase	identified by similarity to SP:P48247; match to protein family HMM PF00202 glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	identified by similarity to SP:P30949; match to protein family HMM PF00202; match to protein family HMM TIGR00713 glutamate-1-semialdehyde-2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	Beta-alanine-pyruvate aminotransferase protein	Glutamate-1-semialdehyde 2,1-aminomutase	Mb0537, hemL, len: 462 aa. Equivalent to Rv0524, len: 462 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 462 aa overlap). Probable hemL, glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8), equivalent to P46716|GSA_MYCLE GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE from Mycobacterium leprae (446 aa), FASTA scores: opt: 1532, E(): 0, (82.6% identity in 460 aa overlap). Also highly similar to others e.g.  Q9F2S0|GSA_STRCO from Streptomyces coelicolor (438 aa); Q06774|GSA_PROFR from Propionibacterium freudenreichii (441 aa); etc. Contains PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. BELONGS TO CLASS-III OF PYRIDOXAL-PHOSPHATE-DEPENDENT AMINOTRANSFERASES. COFACTOR: PYRIDOXAL PHOSPHATE. PROBABLE GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE HEML (GSA) (GLUTAMATE-1-SEMIALDEHYDE AMINOTRANSFERASE) (GSA-AT)	glutamate-1-semialdehyde 2,1-aminomutase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	IPR005814: Aminotransferase class-III glutamate-1-semialdehyde aminotransferase (aminomutase)	similar to Salmonella typhi CT18 glutamate-1-semialdehyde 2,1-aminomutase glutamate-1-semialdehyde 2,1-aminomutase	Similar to Escherichia coli glutamate-1-semialdehyde 2,1-aminomutase HemL or Gsa or PopC or b0154 SWALL:GSA_ECOLI (SWALL:P23893) (426 aa) fasta scores: E(): 2.7e-56, 39.09% id in 440 aa, and to Chlamydophila caviae glutamate-1-semialdehyde-2,1-aminomutase HemL or cca00629 SWALL:Q822Q0 (EMBL:AE016996) (437 aa) fasta scores: E(): 6.1e-143, 77.88% id in 434 aa, and to Yersinia pestis glutamate-1-semialdehyde 2,1-aminomutase HemL or ypo3389 or y0799 SWALL:GSA_YERPE (SWALL:Q8ZBL9) (426 aa) fasta scores: E(): 5.4e-57, 40.04% id in 427 aa putative glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	Glutamate-1-semialdehyde 2,1-aminomutase	Putative glutamate-1-semialdehyde 2,1-aminomutase	glutamate-1-semialdehyde 2,1-aminomutase	glutamate-1-semialdehyde aminotransferase	
CHLTR00215	Putative uncharacterized protein	Uncharacterized conserved protein	conserved hypothetical protein	hypothetical cytosolic protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00216	Ribose-5-phosphate isomerase A	Ribose-5-phosphate isomerase A	ribose 5-phosphate isomerase	Ribose-5-phosphate isomerase A	Ribose-5-phosphate isomerase A	Ribose-5-phosphate isomerase A	Ribose-5-phosphate isomerase A	Highly similar to ribose 5-phosphate isomerase RpiA hypothetical protein	conserved gene ribose-5-phosphate isomerase A	Highly similar to ribose 5-phosphate isomerase RpiA hypothetical protein	Ribose-5-phosphate isomerase A	identified by similarity to SP:Q9ZU38; match to protein family HMM TIGR00021 ribose 5-phosphate isomerase	Ribose 5-phosphate isomerase	ribose 5-phosphate isomerase	identified by match to protein family HMM PF06026; match to protein family HMM TIGR00021 ribose 5-phosphate isomerase	Ribose-5-phosphate isomerase A	ribose 5-phosphate isomerase	Ribose-5-phosphate isomerase A	Ribose-5-phosphate isomerase A	Ribose-5-phosphate isomerase A	Ribose 5-phosphate isomerase A	ribose 5-phosphate isomerase A	Ribose-5-phosphate isomerase A	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ribose-5-phosphate isomerase A	RpiA COG0120 Ribose 5-phosphate isomerase ribose-5-phosphate isomerase	Ribose-5-phosphate isomerase A	Ribose-5-phosphate isomerase A	IPR004788: Ribose 5-phosphate isomerase ribosephosphate isomerase, constitutive	similar to Salmonella typhi CT18 ribose 5-phosphate isomerase ribose 5-phosphate isomerase	
CHLTR00217	Putative uncharacterized protein	Candidate inclusion membrane protein	Candidate inclusion membrane protein	
CHLTR00218	Probable fructose-bisphosphate aldolase class 1	3-oxoacyl-[acyl-carrier-protein] synthase I	DhnA-type fructose-1,6-bisphosphate aldolase	similar to Salmonella typhi CT18 fructose-bisphosphate aldolase class I fructose-bisphosphate aldolase class I	Similar to Escherichia coli, and Escherichia coli O6 fructose-bisphosphate aldolase class I FbaB or DhnA SWALL:ALF1_ECOLI (SWALL:P71295) (349 aa) fasta scores: E(): 1.3e-88, 61.6% id in 349 aa, and to Salmonella typhi, and Salmonella typhimurium fructose-bisphosphate aldolase class I FbaB or t0715 or stm2141 or sty2370 SWALL:Q8XFP7 (EMBL:AE016836) (350 aa) fasta scores: E(): 2.1e-89, 62% id in 350 aa fructose-bisphosphate aldolase class I	Similar to sp|Q9PKH8|ALF1_CHLMU sp|O84217|ALF1_CHLTR sp|P71295|ALF1_ECOLI sp|Q9Z8Q7|ALF1_CHLPN; Ortholog to ERGA_CDS_00560 Probable fructose-bisphosphate aldolase class I	COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase similar to NP_288599.1 fructose-bisphosphate aldolase	COG1830 fructose-bisphosphate aldolase	Similar to Escherichia coli, and Escherichia coli O6 fructose-bisphosphate aldolase class I FbaB or DhnA or B2097 or C2623 SWALL:ALF1_ECOLI (SWALL:P71295) (349 aa) fasta scores: E(): 1.7e-91, 65.41% id in 347 aa, and to Chlamydophila caviae fructose-bisphosphate aldolase class I FbaB or CCA00499 SWALL:Q823C6 (EMBL:AE016995) (349 aa) fasta scores: E(): 1.1e-94, 66.85% id in 350 aa putative fructose-bisphosphate aldolase class I	3-oxoacyl-[acyl-carrier-protein] synthase I	DhnA-type fructose-1,6-bisphosphate aldolase or related enzyme	Similar to sp|Q9PKH8|ALF1_CHLMU sp|O84217|ALF1_CHLTR sp|P71295|ALF1_ECOLI sp|Q9Z8Q7|ALF1_CHLPN; Ortholog to ERWE_CDS_00590 Probable fructose-bisphosphate aldolase class I	fructose-bisphosphate aldolase (EC 4.1.2.13) 1	Code: G; COG: COG1830 conserved hypothetical protein	Fructose-bisphosphate aldolase	Fructose-1,6-bisphosphate aldolase	RSP_3270 is a homologous protein, FbaA. D-FRUCTOSE 1,6-BISPHOSPHATE = GLYCERONE PHOSPHATE + D-GLYCERALDEHYDE 3-PHOSPHATE. ACTIVATED BY CITRATE. (BY SIMILARITY) Citation: Thomson,G.J., Howlett,G.J., Ashcroft,A.E., Berry,A. (1998) Biochem. J. 331:437-445 Fructose-bisphosphate aldolase class I	Code: G; COG: COG1830 conserved hypothetical protein	putative fructose-bisphosphate aldolase, class I identified by similarity to SP:P71295; match to protein family HMM PF01791	Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase	Deoxyribose-phosphate aldolase family identified by match to protein family HMM PF01791	Fructose-bisphosphate aldolase	Code: G; COG: COG1830; orf conserved hypothetical protein	1,6-fructose-bisphosphate aldolase class I EC 4.1.2.13	Fructose-bisphosphate aldolase	fructose-bisphosphate aldolase, class I identified by similarity to SP:P71295; match to protein family HMM PF01791	Fructose-bisphosphate aldolase class I	Fructose-bisphosphate aldolase	fructose-biphosphate aldolase, class I identified by similarity to SP:P71295; match to protein family HMM PF01791	
CHLTR00219	Amino Acid Transporter	Similar to many amino acid transport proteins including: Lactococcus lactis glutamate/gamma-aminobutyrate antiporter GadC SWALL:GADC_LACLC (SWALL:O30417) (503 aa) fasta scores: E(): 5.5e-46, 30.67% id in 463 aa and Brucella melitensis glutamate/gamma-aminobutyrate antiporter bmeii0909 SWALL:Q8YBJ1 (EMBL:AE009724) (510 aa) fasta scores: E(): 1.2e-54, 34.34% id in 460 aa putative amino acid permease	similar to BRA0339, identified by sequence similarity to GB:AAL54151.1; glutamate/gamma-aminobutyrate antiporter glutamate/gamma-aminobutyrate antiporter	Similar to Q8YBJ1 Glutamate:gamma-aminobutyrate antiporter from Brucella melitensis (510 aa). FASTA: opt: 983 Z-score: 1079.5 E(): 3.1e-52 Smith-Waterman score: 983; 34.698 identity in 464 aa overlap Glutamate:gamma-aminobutyric acid antiporter family protein (APC family protein)	Putative amino acid transporter	Aromatic amino acid permease:Amino acid/polyamine transporter, family I:Domain found in permeases	amino acid antiporter	amino acid transporter	Amino acid transporters	Glutamate:gamma-aminobutyric acid antiporter family protein (APC family protein) Similar to Q8YBJ1 Glutamate:gamma-aminobutyrate antiporter from Brucella melitensis (510 aa). FASTA: opt: 983 Z-score: 1079.5 E(): 3.1e-52 Smith-Waterman score: 983; 34.698 identity in 464 aa overlap	probable amino acid transporter STY2589 identified by match to protein family HMM PF00324	Amino acid transporter	Glutamate/gamma-aminobutyrate anti-porter	glutamate/gamma-aminobutyrate antiporter	Putative amino acid permease	Probable glutamate:gamma-aminobutyric acid APC family amino acid-polyamine-organocation transporter	Glutamate:gamma-aminobutyric acid antiporter family protein	putative amino acid antiporter Code: E; COG: COG0531	dicarboxylic amino acid permease go_component: signal recognition particle (sensu Eukaryota)	amino acid-polyamine-organocation (APC) superfamily protein	Conserved hypothetical membrane protein	Magnaporthe grisea hypothetical protein	Glutamate/gamma-aminobutyrate anti-porter	Botrytis cinerea hypothetical protein	Amino acid permease	Putative uncharacterized protein	Amino acid permease-associated region	Amino acid permease-associated region	Amino acid permease-associated region	
CHLTR00220	PP-Loop Superfamily ATPase	similar to conserved hypothetical protein hypothetical protein	conserved gene hypothetical protein	similar to conserved hypothetical protein hypothetical protein	identified by match to protein family HMM PF01171 PP-loop family protein	Putative uncharacterized protein	Similar to Rhizobium loti hypothetical protein Mlr0047 SWALL:Q98NP4 (EMBL:AP002994) (271 aa) fasta scores: E(): 4.8e-17, 35.15% id in 219 aa and to Xylella fastidiosa hypothetical protein Xf0569 xf0569 SWALL:Q9PFT8 (EMBL:AE003903) (312 aa) fasta scores: E(): 8.4e-17, 34.34% id in 230 aa conserved hypothetical protein	Putative uncharacterized protein	similar to BR0831, conserved hypothetical protein conserved hypothetical protein	Putative	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein	tRNA 2-thiocytidine biosynthesis protein ttcA	Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4558 SWALL:AAO79663 (EMBL:AE016945) (248 aa) fasta scores: E(): 9.1e-87, 85.88% id in 248 aa, and to Clostridium perfringens hypothetical protein CPE0990 SWALL:Q8XLQ1 (EMBL:AP003188) (244 aa) fasta scores: E(): 1e-25, 36.43% id in 247 aa, and to Clostridium tetani ATPase of the PP-loop superfamily CTC00320 SWALL:AAO34961 (EMBL:AE015937) (236 aa) fasta scores: E(): 1.7e-24, 34.18% id in 234 aa conserved hypothetical protein	tRNA 2-thiocytidine biosynthesis protein ttcA	identified by similarity to GB:AAN67262.1 conserved hypothetical protein	conserved hypothetical protein	PP-loop	conserved hypothetical protein	conserved hypothetical protein	ATPase, PP-loop superfamily	Citation: (2002) Proc. Natl. Acad. Sci. U.S.A.  99:443-448 ATPases of the PP superfamily	PP-loop protein	putative cell cycle control ATPase	PP-loop	Putative uncharacterized protein	conserved hypothetical protein	predicted ATPase of the PP-loop superfamily implicated in cell cycle control COG0037	conserved hypothetical protein similarity:fasta; with=UniProt:Q8UEA2_AGRT5 (EMBL:AE009140); Agrobacterium tumefaciens (strain C58/ATCC 33970).; Hypothetical protein Atu1858.; length=311; id 86.014; 286 aa overlap; query 4-289; subject 16-301	PP-loop domain protein PFAM: PP-loop: (2.1e-08) KEGG: dra:DR0480 hypothetical protein, ev=1e-139, 84% identity	
CHLTR00221	5'-nucleotidase surE	5'-nucleotidase surE	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 acid phosphatase sure sure or b2744 or c3311 or z4052 or ecs3598 SWALL:SURE_ECOLI (SWALL:P36664) (253 aa) fasta scores: E(): 4.8e-13, 31.27% id in 243 aa, and to Vibrio cholerae acid phosphatase sure sure or vc0531 SWALL:SURE_VIBCH (SWALL:Q9KUI9) (250 aa) fasta scores: E(): 1.3e-20, 35.53% id in 242 aa putative hydrolase	5'-nucleotidase surE	Similar to sp|Q9A6T5|SURE_CAUCR sp|Q8UEQ3|SURE_AGRT5 sp|O08248|SURE_RHIME sp|Q8YGS7|SURE_BRUME; Ortholog to ERGA_CDS_03050 Acid phosphatase surE	COG0496 stationary-phase survival protein	Similar to Thermoanaerobacter tengcongensis acid phosphatase SurE or TTE1338 SWALL:SURE_THETN (SWALL:Q8RA90) (255 aa) fasta scores: E(): 4.7e-28, 34.52% id in 252 aa, and to Bacteroides thetaiotaomicron stationary-phase survival protein SurE BT4003 SWALL:Q8A0L8 (EMBL:AE016943) (259 aa) fasta scores: E(): 4.2e-85, 78.26% id in 253 aa, and to Porphyromonas gingivalis W83 stationary-phase survival protein SurE or PG2163 SWALL:AAQ67113 (EMBL:AE017179) (256 aa) fasta scores: E(): 1.8e-34, 40% id in 245 aa putative stationary-phase survival acid phosphatase	Similar to sp|Q9A6T5|SURE_CAUCR sp|Q8UEQ3|SURE_AGRT5 sp|O08248|SURE_RHIME sp|Q8YGS7|SURE_BRUME; Ortholog to ERWE_CDS_03100 Acid phosphatase surE	Code: R; COG: COG0496 survival protein	Survival protein SurE	Code: R; COG: COG0496 survival protein	SurE acid phosphatase	stationary-phase survival protein SurE	acid phosphatase SurE TIGRFAMsMatches:TIGR00087	Code: R; COG: COG0496 survival protein	stationary-phase survival acid phosphatase EC 3.1.3.2	5'-nucleotidase , exopolyphosphatase , 3'- nucleotidase	stationary-phase survival protein SurE KEGG: sil:SPO2688 acid phosphatase SurE, ev=1e-107, 72% identity TIGRFAM: stationary-phase survival protein SurE: (9.6e-57) PFAM: Survival protein SurE: (1.3e-63)	Multifunctional protein surE	stationary-phase survival protein SurE	stationary-phase survival protein SurE KEGG: gsu:GSU1523 stationary-phase survival protein SurE TIGRFAM: stationary-phase survival protein SurE PFAM: Survival protein SurE	stationary-phase survival protein SurE	stationary-phase survival protein SurE	Multifunctional protein surE	stationary-phase survival protein SurE KEGG: bur:Bcep18194_B2902 acid phosphatase TIGRFAM: stationary-phase survival protein SurE PFAM: Survival protein SurE	acid phosphatase, survival protein	stationary-phase survival protein SurE KEGG: bcn:Bcen_4813 stationary-phase survival protein SurE TIGRFAM: stationary-phase survival protein SurE PFAM: Survival protein SurE	SurE acid phosphatase	stationary-phase survival protein SurE	
CHLTR00222	4-hydroxybenzoate octaphenyltransferase	4-hydroxybenzoate octaprenyltransferase	UbiA protein	4-hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate octaprenyltransferase	identified by match to protein family HMM PF01040; match to protein family HMM TIGR01475 4-hydroxybenzoate octaprenyltransferase, putative	4-hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate polyprenyltransferase	Similar to many including: Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 4-hydroxybenzoate octaprenyltransferase UbiA or Cyr SWALL:UBIA_ECOLI (SWALL:P26601) (290 aa) fasta scores: E(): 6.2e-05, 27.89% id in 294 aa, and to Campylobacter jejuni putative 4-hydroxybenzoate octaprenyltransferase UbiA or cj0164C SWALL:Q9PIW3 (EMBL:AL139074) (294 aa) fasta scores: E(): 5.5e-17, 28.52% id in 298 aa putative exported transferase	4-HYDROXYBENZOATE OCTAPRENYLTRANSFERASE	4-hydroxybenzoate octaprenyltransferase	Putative 4-hydroxybenzoate octaprenyltransferase	Similar to sp|O52366|UBIA_PROST sp|P57970|UBIA_PASMU sp|P26601|UBIA_ECOLI rp||ubiA rc||ubiA sp|Q10252|COQ2_SCHPO; Ortholog to ERGA_CDS_05990 4-hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate octaprenyltransferase	COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases similar to NP_697445.1 4-hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate polyprenyltransferase	4-HB polyprenyltransferase 4-hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate polyprenyltransferase	Similar to sp|O52366|UBIA_PROST sp|P57970|UBIA_PASMU sp|P26601|UBIA_ECOLI rp||ubiA rc||ubiA sp|Q10252|COQ2_SCHPO; Ortholog to ERWE_CDS_06080 4-hydroxybenzoate octaprenyltransferase	ortholog to Escherichia coli bnum: b4040; MultiFun: Cell structure 6.1; Metabolism 1.3.6, 1.5.3.11 4-hydroxybenzoate octaprenyl transferase	Best Blastp Hit: gb|AAF41148.1| (AE002428) 4-hydroxybenzoate octaprenyltransferase [Neisseria meningitidis MC58] COG0382 4-hydroxybenzoate octaprenyltranferase putative 4-hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate polyprenyltransferase, putative	4-hydroxybenzoate polyprenyl transferase identified by match to protein family HMM PF01040; match to protein family HMM TIGR01474	4-hydroxybenzoate polyprenyl transferase	putative 4-hydroxybenzoate--polyprenyl transferase	
CHLTR00224	Putative uncharacterized protein yqfU	conserved hypothetical protein	Similar to many proteins of undefined function including: Bacillus cereus hypothetical membrane spanning protein Bc4280 SWALL:Q812T4 (EMBL:AE017011) (292 aa) fasta scores: E(): 7.2e-35, 39.56% id in 278 aa and Listeria monocytogenes, Listeria innocua hypothetical protein Lmo1385 or lin1422 SWALL:Q92BX0 (EMBL:AL591978) (308 aa) fasta scores: E(): 5.7e-28, 37.24% id in 290 aa putative lipoprotein	identified by match to protein family HMM PF02588 membrane protein, putative	probable membrane protein	conserved hypothetical protein	hypothetical protein similarity to COG1284 Uncharacterized BCR(Evalue: 8E-76)	conserved hypothetical protein; possible permease	hypothetical membrane spanning protein	Complete genome	Hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein precursor	Putative uncharacterized protein	Putative uncharacterized protein	YqfU	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein precursor	Hypothetical membrane protein	Hypothetical yqfU protein	Putative exported protein precursor	Putative exported protein precursor	Membrane protein	Membrane protein	Putative membrane protein	Membrane protein	Putative membrane protein	
CHLTR00223	Probable aromatic acid decarboxylase	3-octaprenyl-4-hydroxybenzoate decarboxylase UbiX	Probable 3-octaprenyl-4-hydroxybenzoate carboxy- lyase protein	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-polyprenyl-4-hydroxybenzoate decarboxylase	Molecular Function: carboxy-lyase activity (GO:0016831) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-polyprenyl-4-hydroxybenzoate decarboxylase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-polyprenyl-4-hydroxybenzoate decarboxylase	similar to Salmonella typhi CT18 putative decarboxylase putative decarboxylase	Weakly similar to the C-terminus of Saccharomyces cerevisiae phenylacrylic acid decarboxylase pad1 or pof1 or ydr538W SWALL:PAD1_YEAST (SWALL:P33751) (242 aa) fasta scores: E(): 5.8e-24, 38.09% id in 189 aa. Also similar to several others for which function has to be fully defined e.g. Bacillus firmus probable aromatic acid decarboxylase SWALL:PAAD_BACFI (SWALL:P94300) (200 aa) fasta scores: E(): 2.3e-27, 44.89% id in 196 aa putative flavoprotein	Phenylacrylic acid decarboxylase	similar to BRA0293, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, hypothetical hypothetical 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	Probable aromatic acid decarboxylase	Putative decarboxylase	putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase similar to NP_360438.1 3-octaprenyl-4-hydroxybenzoate carboxyl-lyase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	identified by match to protein family HMM PF02441; match to protein family HMM TIGR00421 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-polyprenyl-4-hydroxybenzoate decarboxylase	3-octaprenyl-4-hydroxybenzoate decarboxylase UbiX	identified by match to protein family HMM PF02441; match to protein family HMM TIGR00421 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative	identified by match to protein family HMM PF02441; match to protein family HMM TIGR00421 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	Flavoprotein	Best Blastp Hit: pir||B81023 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NMB1945 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227204|gb|AAF42274.1| (AE002543) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Neisseria meningitidis MC58] COG0163 3-octaprenyl-4-hydroxybenzoate; UbiX putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	Code: H; COG: COG0163 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	
CHLTR00226	Putative uncharacterized protein	Candidate inclusion membrane protein	Candidate inclusion membrane protein	
CHLTR00227	Putative uncharacterized protein	Candidate inclusion membrane protein	Candidate inclusion membrane protein	
CHLTR00228	Putative uncharacterized protein	Candidate inclusion membrane protein	Candidate inclusion membrane protein	
CHLTR00229	Putative uncharacterized protein	Candidate inclusion membrane protein precursor	Candidate inclusion membrane protein precursor	
CHLTR00230	Putative uncharacterized protein	Candidate inclusion membrane protein	Candidate inclusion membrane protein	
CHLTR00231	Putative uncharacterized protein	Candidate inclusion membrane protein	
CHLTR00232	Putative uncharacterized protein	Candidate inclusion membrane protein	Candidate inclusion membrane protein	
CHLTR00233	Putative uncharacterized protein	Candidate inclusion membrane protein	Candidate inclusion membrane protein	
CHLTR00234	Neutral Amino Acid (Glutamate) Transporter	Similar to amino acid transporter hypothetical protein	conserved gene sodium:dicarboxylate symporter	Similar to amino acid transporter hypothetical protein	Proton/glutamate symporter	Biological Process: dicarboxylic acid transport (GO:0006835), Cellular Component: membrane (GO:0016020), Molecular Function: sodium:dicarboxylate symporter activity (GO:0017153) Sodium:dicarboxylate symporter	sodium:dicarboxylate symporter	Na+/H+-dicarboxylate symporter	Similar to Streptomyces coelicolor putative proton transport protein Sco4498 or scd35.05 SWALL:Q9L0U6 (EMBL:AL939120) (440 aa) fasta scores: E(): 1.6e-23, 29.47% id in 380 aa and to Vibrio vulnificus Na+/H+-dicarboxylate symporter vv21383 SWALL:Q8D4C3 (EMBL:AE016813) (434 aa) fasta scores: E(): 4.4e-23, 27.58% id in 406 aa putative sodium symporter-family membrane transport protein	hypothetical protein, similar to proton/sodium-glutamate symport protein	Ortholog of S. aureus MRSA252 (BX571856) SAR0401 putative sodium:dicarboxylate symporter protein	Glutamate transporter	hypothetical protein, similar to proton/sodium-glutamate symport protein	sodium:dicarboxylate symporter family protein YdjN	sodium:dicarboxylate symporter family protein	identified by match to protein family HMM PF00375 sodium:dicarboxylate symporter family protein	Sodium:dicarboxylate symporter	Similar to Escherichia coli proton glutamate symport protein GltP SW:GLTP_ECOLI (P21345) (437 aa) fasta scores: E(): 2.4e-22, 25.459% id in 436 aa, and to Bacillus subtilis hypothetical symporter YhcL SW:YHCL_BACSU (P54596) (463 aa) fasta scores: E(): 1.8e-102, 61.283% id in 452 aa putative sodium:dicarboxylate symporter protein	Code: R; COG: COG1823 kinase fragment	Sodium:dicarboxylate symporter	identified by match to protein family HMM PF00375 sodium:dicarboxylate symporter family protein	similar to gi|27469272|ref|NP_765909.1| [Staphylococcus epidermidis ATCC 12228], percent identity 78 in 458 aa, BLASTP E(): 0.0 putative sodium:dicarboxylate symporter protein	Putative glutamate/aspartate:cation symporter	Code: R; COG: COG1823 kinase fragment	Sodium:dicarboxylate symporter	sodium:dicarboxylate symporter family protein identified by match to protein family HMM PF00375	proton/sodium-glutamate symport protein	Sodium:dicarboxylate symporter	proton:sodium-glutamate symport protein	
CHLTR00235	Transporter	putative sodium dependent transporter	Similar to Chlamydophila caviae sodium-dependent transporter NadT SWALL:O30781 (EMBL:AF017105) (386 aa) fasta scores: E(): 2.7e-125, 88.58% id in 368 aa and to Bacillus cereus sodium-dependent leucine transporter bc2170 SWALL:Q81E25 (EMBL:AE017005) (446 aa) fasta scores: E(): 1.8e-32, 30.68% id in 453 aa, and to Bacillus anthracis sodium-dependent transporter, putative ba2216 SWALL:Q81R42 (EMBL:AE017031) (446 aa) fasta scores: E(): 3.2e-32, 30.46% id in 453 aa putative sodium symporter-family membrane transport protein	Putative sodium-dependent inner membrane transport protein	Similar to: HI0736, Y736_HAEIN conserved hypothetical sodium-dependent transporter	sodium-dependent symporter	putative sodium-dependent transport system	Best Blastp Hit: pir||E81964 probable sodium-dependent inner membrane transport protein NMA0470 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379216|emb|CAB83765.1| (AL162753) putative sodium-dependent inner membrane transport protein [Neisseria meningitidis] COG0733 Sodium-dependent transporters (SNF family) putative sodium-dependent transporter	solute carrier family 6 (neutral amino acid transporter), member 15 [Source:HGNC Symbol;Acc:13621]	sodium-dependent transporter	transcript_id=ENSSTOT00000004456	sodium/proline symporter	sodium-dependent amino acid transporter	Putative sodium-dependent inner membrane transport protein	Conserved hypothetical sodium-dependent transporter	Sodium:neurotransmitter symporter	Dihydroxy-acid dehydratase	Hypothetical sodium-dependent transporter	Transporter	Putative sodium-dependent transporter precursor	Transporter	jgi|Helro1|189063	Transporter	sodium-dependent inner membrane transport protein	jgi|Lotgi1|235832|estExt_fgenesh2_pg.C_sca_700085	Transporter	Transporter	
CHLTR00236	Inclusion Membrane Protein B	Inclusion membrane protein B	Inclusion membrane protein B	
CHLTR00237	Inclusion Membrane Protein C	Inclusion membrane protein C	Inclusion membrane protein C	
CHLTR00238	Putative uncharacterized protein	conserved hypothetical protein	conserved hypothetical protein	CAMP-binding protein	conserved hypothetical protein	ATP/ADP translocase-like protein KEGG: msu:MS0135 hypothetical protein	PBS lyase HEAT-like repeat/cyclic nucleotide-binding domain protein identified by match to protein family HMM PF00027; match to protein family HMM PF03130	ADP,ATP carrier protein	PBS lyase HEAT-like repeat	Transcriptional regulator, putative	Putative membrane transport protein	Putative membrane transport protein	Putative uncharacterized protein	Putative membrane transport protein	
CHLTR00239	CAMP-Dependent Protein Kinase Regulatory Subunit	cAMP-dependent protein kinase regulatory chain	transcription regulator, crp family	Cyclic nucleotide-binding protein	Transcription regulator, crp family	Transcription regulator, crp family	Transcription regulator, crp family	
CHLTR00240	Acyl carrier protein	Acyl carrier protein (ACP):Phosphopantetheine attachment site	Acyl carrier protein	Acyl carrier protein	Acyl carrier protein (ACP)	conserved gene acyl carrier protein	Acyl carrier protein (ACP)	identified by similarity to EGAD:37837; match to protein family HMM PF00550; match to protein family HMM TIGR00517 acyl carrier protein	Acyl carrier protein	hypothetical protein	identified by match to protein family HMM PF00550; match to protein family HMM TIGR00517 acyl carrier protein	Acyl carrier protein	acyl carrier protein	Acyl carrier protein	Acyl carrier protein	Acyl carrier protein	identified by match to protein family HMM PF00550; match to protein family HMM TIGR00517 acyl carrier protein	InterProMatches:IPR003231; Molecular Function: acyl carrier activity (GO:0000036), Biological Process: fatty acid biosynthesis (GO:0006633) acyl carrier protein	acyl carrier protein ACP	Acyl carrier protein	Acyl COG0236 Acyl carrier protein carrier protein ACP	Acyl carrier protein	Acyl carrier protein	IPR001092: Basic helix-loop-helix dimerization domain bHLH; IPR003231: Acyl carrier protein (ACP); IPR006162: Phosphopantetheine attachment site;IPR006163: Phosphopantetheine-binding domain Acyl carrier protein (ACP)	Acyl carrier protein	similar to Salmonella typhi CT18 acyl carrier protein acyl carrier protein	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri acyl carrier protein SWALL:ACP_ECOLI (SWALL:P02901) (77 aa) fasta scores: E(): 1.9e-10, 54.66% id in 75 aa, and to Helicobacter pylori J99 acyl carrier protein AcpP or jhp0506 SWALL:ACP_HELPJ (SWALL:Q9ZLS1) (78 aa) fasta scores: E(): 1.6e-11, 54.79% id in 73 aa acyl carrier protein	Acyl carrier protein	similar to BR0459 AcpP, acyl carrier protein	
CHLTR00241	3-oxoacyl-[acyl-carrier-protein] reductase	3-oxoacyl-(Acyl-carrier-protein) reductase	3-oxoacyl-[ACP] reductase	InterProMatches:IPR002198; Biological Process: metabolism (GO:0008152), Molecular Function: oxidoreductase activity (GO:0016491) beta-ketoacyl-acyl carrier protein reductase	3-oxoacyl-acyl carrier protein reductase	similar to Salmonella typhi CT18 3-oxoacyl-[acyl-carrier protein] reductase 3-oxoacyl-[acyl-carrier protein] reductase	Similar to Escherichia coli, and Shigella flexneri 3-oxoacyl-[acyl-carrier protein] reductase FabG or b1093 or sf1097 or s1177 SWALL:FABG_ECOLI (SWALL:P25716) (244 aa) fasta scores: E(): 5.3e-39, 51.25% id in 240 aa, and to Vibrio harveyi 3-oxoacyl-[acyl-carrier protein] reductase fabG SWALL:FABG_VIBHA (SWALL:P55336) (244 aa) fasta scores: E(): 5.3e-43, 53.9% id in 243 aa 3-oxoacyl-[acyl-carrier protein] reductase	Putative uncharacterized protein gbs0335	identified by match to PFAM protein family HMM PF00106 3-oxoacyl-[acyl-carrier protein] reductase	Putative 3-oxoacyl-[acyl-carrier protein] reductase	Putative beta-ketoacyl-ACP reductase	3-oxoacyl-[acyl-carrier protein] reductase	3-ketoacyl-acyl carrier protein reductase; Similar to: HI0155, FABG_HAEIN 3-oxoacyl-[acyl-carrier protein] reductase	3-oxoacyl-[acyl-carrier-protein] reductase	3-oxoacyl-(acyl-carrier-protein) reductase, truncated	3-oxoacyl reductase	identified by match to protein family HMM PF00106; match to protein family HMM PF07993; match to protein family HMM TIGR01830 3-oxoacyl-(acyl-carrier-protein) reductase	3-oxoacyl-[acyl-carrier-protein] reductase	3-oxoacyl-(acyl-carrier-protein) reductase	3-oxoacyl-(acyl-carrier-protein) reductase	3-oxoacyl-(acyl-carrier-protein) reductase identified by match to protein family HMM PF00106; match to protein family HMM TIGR01830	3-oxoacyl-(Acyl-carrier-protein) reductase	3-oxoacyl-[acyl-carrier protein] reductase EC 1.1.1.100	3-oxoacyl-(acyl-carrier-protein) reductase	3-oxoacyl-(acyl-carrier-protein) reductase TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase: (1.1e-146) PFAM: NAD-dependent epimerase/dehydratase: (0.0009) short-chain dehydrogenase/reductase SDR: (6.3e-46) Male sterility-like: (0.0027) KEGG: sil:SPO2275 3-oxoacyl-(acyl-carrier-protein) reductase, ev=1e-115, 84% identity	3-oxoacyl-(acyl-carrier-protein) reductase	3-oxoacyl-(Acyl-carrier-protein) reductase	3-oxoacyl-(acyl-carrier-protein) reductase identified by similarity to SP:P25716; match to protein family HMM PF00106; match to protein family HMM PF01370	hypothetical protein similarity to COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)(Evalue: 9E-88)	
CHLTR00242	Malonyl CoA-Acyl Carrier Transacylase	Malonyl CoA-acyl carrier protein transacylase	FabD protein	[acyl-carrier protein] S-malonyltransferase	identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 malonyl CoA-acyl carrier protein transacylase	malonyl coenzyme A-acyl carrier	Malonyl CoA-acyl carrier protein transacylase	(Acyl-carrier-protein) S-malonyltransferase	identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 malonyl CoA-acyl carrier protein transacylase	Malonyl CoA-acyl carrier protein transacylase	InterProMatches:IPR004410; Molecular Function: [acyl-carrier protein] S-malonyltransferase activity (GO:0004314), Biological Process: fatty acid biosynthesis (GO:0006633) malonyl CoA-acyl carrier protein transacylase	malonyl CoA-acyl carrier protein transacylase	Malonyl CoA-[acyl carrier protein] transacylase	Malonyl CoA-acyl carrier protein transacylase	(acyl-carrier-protein) S-malonyltransferase, FabD	Similar to Escherichia coli, and Escherichia coli O6 malonyl CoA-acyl carrier protein transacylase FabD or TfpA or b1092 or c1361 SWALL:FABD_ECOLI (SWALL:P25715) (308 aa) fasta scores: E(): 2.3e-32, 39.16% id in 286 aa, and to Bacillus subtilis malonyl CoA-acyl carrier protein transacylase fabD SWALL:FABD_BACSU (SWALL:P71019) (317 aa) fasta scores: E(): 2.8e-38, 42.23% id in 296 aa malonyl CoA-acyl carrier protein transacylase	Malonyl CoA-acyl carrier protein transacylase	similar to BR0457, malonyl CoA-acyl carrier protein transacylase FabD, malonyl CoA-acyl carrier protein transacylase	Putative uncharacterized protein gbs0334	Malonyl CoA-acyl carrier protein transacylase	malonyl CoA-acyl carrier protein transacylase	MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE	identified by match to PFAM protein family HMM PF00698 malonyl CoA-acyl carrier protein transacylase	Ortholog of S. aureus MRSA252 (BX571856) SAR1206 putative malonyl CoA-acyl carrier protein transacylase	malonyl CoA-acyl carrier protein transacylase	Malonyl coenzyme A-acyl carrier protein transacylase	Similar to sp|P71019|FABD_BACSU sp|P43712|FABD_HAEIN sp|O85140|FABD_SALTY sp|P25715|FABD_ECOLI; Ortholog to ERGA_CDS_07780 Malonyl CoA-acyl carrier protein transacylase	identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 malonyl CoA-acyl carrier protein transacylase	
CHLTR00243	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase III	conserved gene 3-oxoacyl-(acyl carrier protein) synthase II FabH	3-oxoacyl-[acyl-carrier-protein] synthase III	3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2	identified by match to protein family HMM TIGR00747 3-oxoacyl-(acyl-carrier-protein) synthase III	3-oxoacyl-[acyl-carrier-protein] synthase III	3-oxoacyl-[acyl-carrier-protein] synthase III	identified by similarity to SP:P24249; match to protein family HMM TIGR00747 3-oxoacyl-(acyl-carrier-protein) synthase III	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase III protein 1	3-oxoacyl-[acyl-carrier-protein] synthase 3	identified by similarity to SP:P24249; match to protein family HMM TIGR00747 3-oxoacyl-(acyl-carrier-protein) synthase III	3-oxoacyl-(Acyl-carrier-protein) synthase III protein	InterProMatches:IPR004655; Molecular Function: 3-oxoacyl-[acyl-carrier protein] synthase activity (GO:0004315), Biological Process: fatty acid biosynthesis (GO:0006633) beta-ketoacyl-acyl carrier protein synthase III	3-oxoacyl-[acyl-carrier-protein] synthase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark beta-ketoacyl-synthase III	3-oxoacyl-[acyl-carrier-protein] synthase III	Similar to Helicobacter pylori 3-oxoacyl-[acyl-carrier-protein] synthase III FabH or hp0202 SWALL:FABH_HELPY (SWALL:O24994) (331 aa) fasta scores: E(): 3.3e-48, 41.79% id in 323 aa and to Xanthomonas axonopodis beta-ketoacyl-[acp] synthase III FabH or xac1123 SWALL:AAM35996 (EMBL:AE011741) (325 aa) fasta scores: E(): 2e-50, 45.65% id in 322 aa 3-oxoacyl-[acyl-carrier-protein] synthase III	3-oxoacyl-[acyl-carrier-protein] synthase 3	similar to BR0777, 3-oxoacyl-(acyl-carrier-protein) synthase III FabH, 3-oxoacyl-(acyl-carrier-protein) synthase III	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-(acyl-carrier protein) synthase homologue	3-oxoacyl-[acyl-carrier-protein] synthase III	
CHLTR00244	Recombination protein recR	Recombination protein recR	RecR	recombination protein recR	Recombination protein recR	Recombination protein recR	Recombination and repair protein recR	conserved gene recombinational DNA repair protein RecR	Recombination and repair protein recR	Recombination protein recR	identified by similarity to EGAD:19739; match to protein family HMM PF01751; match to protein family HMM PF02132; match to protein family HMM TIGR00615 recombination protein RecR	Recombination protein recR	Recombination protein RecR	recombination protein RecR	identified by match to protein family HMM PF01751; match to protein family HMM TIGR00615 recombination protein RecR	Recombination protein recR	recombination protein	Recombination protein recR	Recombination protein recR	Recombinational DNA repair protein	identified by similarity to SP:P24277; match to protein family HMM PF02132; match to protein family HMM TIGR00615 recombination protein RecR	Recombination protein recR	DNA recombination protein	Recombination protein recR	Mb3742c, recR, len: 203 aa. Equivalent to Rv3715c, len: 203 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 203 aa overlap). Probable recR, recombination protein, equivalent to O69520|RECR_MYCLE|ML2329|MLCB2407.21 RECOMBINATION PROTEIN from Mycobacterium leprae (203 aa), FASTA scores: opt: 1246, E(): 9.2e-71, (91.6% identity in 202 aa overlap).  Also highly similar to many e.g.  Q9XAI4|RECR_STRCO|SC66T3.29c from Streptomyces coelicolor (199 aa), FASTA scores: opt: 952, E(): 1.9e-52, (68.3% identity in 202 aa overlap); P24277|RECR_BACSU|RECM|RECD from Bacillus subtilis (198 aa), FASTA scores: opt: 696, E(): 1.8e-36, (50.5% identity in 198 aa overlap); Q9ZNA2|RECR_DEIRA|DR0198 from Deinococcus radiodurans (220 aa), FASTA scores: opt: 673, E(): 5.2e-35, (49.75% identity in 195 aa overlap); etc. BELONGS TO THE RECR FAMILY. RECOMBINATION PROTEIN RECR	InterProMatches:IPR000093; DNA repair and genetic recombination, Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310) DNA repair protein RecR	RecF pathway recombinational DNA repair protein RecR	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark recombination protein RecR	RecM recombinational DNA repair protein	
CHLTR00245	Omp85 Analog	Bacterial surface antigen	YaeT protein	Putative outer membrane signal peptide protein	Outer membrane protein assembly factor yaeT	similar to protective surface antigen hypothetical protein	conserved gene outer membrane protein	similar to protective surface antigen hypothetical protein	identified by match to protein family HMM PF01103; match to protein family HMM PF07244 outer membrane protein, OMP85 family	Probable outer membrane protein	Outer membrane antigen	identified by similarity to OMNI:NTL01HP00596; match to protein family HMM PF01103 outer membrane protein, OMP85 family	Outer membrane lipoprotein	Outer membrane protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark outer membrane antigen	putative outer membrane antigen	Outer membrane protein/protective antigen OMA87	similar to Salmonella typhi CT18 outer membrane protein precursor outer membrane protein precursor	Similar to Haemophilus influenzae protective surface antigen d15 precursor SWALL:D153_HAEIN (SWALL:O32629) (793 aa) fasta scores: E(): 5.6e-13, 23.23% id in 835 aa and to Xylella fastidiosa outer membrane antigen xf1046 SWALL:Q9PEI2 (EMBL:AE003941) (784 aa) fasta scores: E(): 5.8e-26, 23.37% id in 830 aa putative exported protein	Conserved hypothetical outer membrane protein	similar to BR1154, bacterial surface antigen bacterial surface antigen	Outer membrane antigen	Outer membrane protein	Putative Outer membrane protein	Outer membrane protein assembly factor yaeT	Outer membrane protein OMP85	Outer membrane protein	Similar to rp||omp1; Ortholog to ERGA_CDS_08660 Outer membrane protein omp1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pm : putative membrane component putative outer membrane protein	
CHLTR00246	Skp-like protein	Outer membrane protein	outer membrane protein/ompH	OmpH outer membrane protein	Outer membrane protein precursor	Outer membrane protein precursor	Outer membrane chaperone Skp	Outer membrane protein	
CHLTR00248	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00247	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase	identified by match to protein family HMM PF00132; match to protein family HMM PF04613; match to protein family HMM TIGR01853 UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	identified by similarity to SP:P21645; match to protein family HMM PF00132; match to protein family HMM PF04613; match to protein family HMM TIGR01853 UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase	UDP-3-O-(3-hydroxymyristoyl) glucosamine N- acyltransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase	Similar to Escherichia coli UDP-3-o-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD SWALL:LPXD_ECOLI (SWALL:P21645) (340 aa) fasta scores: E(): 1.1e-32, 33.92% id in 339 aa, and to Pseudomonas aeruginosa UDP-3-o-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD or pa3646 SWALL:LPXD_PSEAE (SWALL:Q9HXY6) (353 aa) fasta scores: E(): 4.3e-41, 39.31% id in 351 aa UDP-3-o-[3-hydroxymyristoyl] glucosamine N-acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	similar to BR1153, UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase LpxD, UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	putative assignment UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme UDP-3-O-[3-hydroxylauroyl] glucosamine N-acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	Similar to: HI0915, LPXD_HAEIN UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	Similar to Rickettsia rickettsii UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD or FirA SWALL:LPXD_RICRI (SWALL:P32202) (345 aa) fasta scores: E(): 1.3e-37, 39.67% id in 305 aa, and to Bacteroides thetaiotaomicron UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase BT4207 SWALL:AAO79312 (EMBL:AE016944) (346 aa) fasta scores: E(): 2.1e-104, 79.19% id in 346 aa, and to Chlorobium tepidum UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD or CT1360 SWALL:LPXD_CHLTE (SWALL:Q8KCQ3) (353 aa) fasta scores: E(): 2.4e-41, 39.52% id in 339 aa putative UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase LpxD protein	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	Similar to Q83DT0 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase from Coxiella burnetii (342 aa). FASTA: opt: 1026 Z-score: 1121.9 E(): 1.2e-54 Smith-Waterman score: 1024; 47.041 identity in 338 aa overlap paralog of FTT0286 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (FirA protein) (EC 2.3.1.-)	UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	identified by similarity to SP:P21645; match to protein family HMM PF00132; match to protein family HMM PF04613; match to protein family HMM TIGR01853 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	
CHLTR00249	Pyruvate Dehydrogenase Alpha	pyruvate dehydrogenase E1 component alpha subunit	identified by similarity to SP:Q9R9N5; match to protein family HMM PF00676 pyruvate dehydrogenase complex, E1 component, alpha subunit	Pyruvate dehydrogenase E1 component alpha subunit	Pyruvate dehydrogenase alpha subunit protein	InterProMatches:IPR001017; Biological Process: metabolism (GO:0008152), Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor (GO:0016624) acetoin dehydrogenase E1 component (TPP-dependent alpha subunit)	Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase E1 component, eukaryotic type, alpha subunit	Similar to the N-terminal alpha subunits of: Rhizobium meliloti pyruvate dehydrogenase E1 component, alpha subunit PdhA SWALL:ODPA_RHIME (SWALL:Q9R9N5) (348 aa) fasta scores: E(): 9e-38, 40.13% id in 304 aa and Rickettsia sibirica pyruvate dehydrogenase E1 component alpha subunit SWALL:EAA25604 (EMBL:AABW01000001) (326 aa) fasta scores: E(): 1.3e-39, 39.81% id in 319 aa pyruvate dehydrogenase e1 component, alpha subunit	similar to BR1129, pyruvate dehydrogenase complex, E1 component, alpha subunit PdhA, pyruvate dehydrogenase complex, E1 component, alpha subunit	Pyruvate dehydrogenase E1 component, alpha subunit	Pyruvate dehydrogenase E1 alpha subunit	TPP-dependent acetoin dehydrogenase alpha chain	COG1071 pyruvate dehydrogenase E1 component alpha subunit	Pyruvate dehydrogenase E1 component alpha subunit	Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, alpha subunit	acetoin dehydrogenase (TPP-dependent) E1 component alpha subunit	go_component: mitochondrion [goid 0005739]; go_function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [goid 0016624]; go_process: metabolism [goid 0008152] pyruvate dehydrogenase E1 component alpha subunit, putative	Similar to sp|Q9ZDR4|ODPA_RICPR sp|Q9R9N5|ODPA_RHIME sp|O66112|ODPA_ZYMMO sp|P52900|ODPA_SMIMA; Ortholog to ERWE_CDS_07920 Pyruvate dehydrogenase E1 component, alpha subunit	pyruvate dehydrogenase (lipoamide)	dehydrogenase, E1 component	Pyruvate dehydrogenase	Pyruvate dehydrogenase (lipoamide)	Dehydrogenase, E1 component:Mitochondrial substrate carrier	Dehydrogenase, E1 component	PYRUVATE + LIPOAMIDE = S- ACETYLDIHYDROLIPOAMIDE + CO(2). Cofactor: THIAMINE PYROPHOSPHATE (BY SIMILARITY).  Citation: Cabanes,D., Boistard,P., Batut,J., (2000) Mol.  Plant Microbe Interact. 13:483-493 Pyruvate dehydrogenase E1 component, alpha subunit	Pyruvate dehydrogenase	Pyruvate dehydrogenase (lipoamide)	dehydrogenase E1 component, alpha subunit identified by match to protein family HMM PF00676	
CHLTR00250	Pyruvate Dehydrogenase Beta	pyruvate dehydrogenase E1 component beta subunit	identified by similarity to SP:Q9R9N4; match to protein family HMM PF00364; match to protein family HMM PF02779; match to protein family HMM PF02780 pyruvate dehydrogenase complex, E1 component, beta subunit	Pyruvate dehydrogenase E1 component beta subunit	Pyruvate dehydrogenase beta subunit protein	Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase E1 component, eukaryotic type, beta subunit	Similar to the C-terminal beta domains of: Rhizobium meliloti pyruvate dehydrogenase E1 component, beta subunit PdhB SWALL:ODPB_RHIME (SWALL:Q9R9N4) (460 aa) fasta scores: E(): 2.1e-63, 50% id in 326 aa and to Brucella melitensis pyruvate dehydrogenase E1 component, beta subunit bmei0855 SWALL:Q8YHE6 (EMBL:AE009526) (461 aa) fasta scores: E(): 3.8e-64, 50.3% id in 326 aa pyruvate dehydrogenase E1 component, beta subunit	similar to BR1128, pyruvate dehydrogenase complex, E1 component, beta subunit PdhB, pyruvate dehydrogenase complex, E1 component, beta subunit	Pyruvate dehydrogenase E1 component beta subunit	pyruvate dehydrogenase E1 beta subunit	Similar to sp|Q9R9N4|ODPB_RHIME sp|Q9ZDR3|ODPB_RICPR; Ortholog to ERGA_CDS_00910 Pyruvate dehydrogenase E1 component, beta subunit precursor	COG0021 TktA transketolase similar to NP_771422.1 pyruvate dehydrogenase E1 beta subunit precursor	TPP-dependent acetoin dehydrogenase beta chain	COG0022 pyruvate dehydrogenase E1 component beta subunit	LmjF25.1710, predicted protein, len = 351 aa, probably pyruvate dehydrogenase e1 component beta subunit, mitochondrial precursor; predicted pI = 5.7160; good similarity to many pyruvate dehydrogenase e1 component beta subunit, mitochondrial precursor proteins in diverse organisms; contains both a transketolase, pyridine binding domain and a transketolase, C-terminal domain pyruvate dehydrogenase E1 beta subunit, putative	similar to pyruvate dehydrogenase E1 B-subunit; pdbA (GI:45771900) (Aspergillus niger); go_component: mitochondrion [goid 0005739]; go_component: pyruvate dehydrogenase complex [goid 0045254]; go_function: pyruvate dehydrogenase (acetyl-transferring) activity [goid 0004739]; go_process: pyruvate metabolism [goid 0006090] pyruvate dehydrogenase E1 beta subunit, putative	Pyruvate dehydrogenase E1 component beta subunit	Pyruvate/2-oxoglutarate dehydrogenase complex, beta subunit	go_component: mitochondrion [goid 0005739]; go_function: pyruvate dehydrogenase (acetyl-transferring) activity [goid 0004739]; go_process: metabolism [goid 0008152] pyruvate dehydrogenase E1 beta subunit, putative	Similar to sp|Q9R9N4|ODPB_RHIME sp|Q9ZDR3|ODPB_RICPR; Ortholog to ERWE_CDS_00950 Pyruvate dehydrogenase E1 component, beta subunit precursor	dehydrogenase complex, E1 component, beta subunit	Pyruvate dehydrogenase E1 component, beta subunit precursor	Transketolase	Pyruvate dehydrogenase E1 beta subunit	Transketolase, central region:Transketolase, Cterminal	Biotin/lipoyl attachment:2-oxo acid dehydrogenase, acyltransferase component, lipoyl-binding:Transketolase, central region:Tr...	Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component	PYRUVATE + LIPOAMIDE = S- ACETYLDIHYDROLIPOAMIDE + CO(2). THIAMINE PYROPHOSPHATE AND CONTAINS ONE COVALENTLY-BOUND LIPOYL COFACTOR (BY SIMILARITY). Citation: Cabanes,D., Boistard,P., Batut,J.,(2000) Mol. Plant Microbe Interact. 13:483-493 Pyruvate dehydrogenase E1 component, beta subunit	
CHLTR00251	Dihydrolipoamide Acetyltransferase	InterProMatches:IPR011053 acetoin dehydrogenase E2 component (dihydrolipoamide acetyltransferase)	Similar to Prokaryotic and, in parts to, Eukaryotic components of the pyruvate dehydrogenase complex: Bacillus stearothermophilus dihydrolipoamide acetyltransferase PdhC SWALL:ODP2_BACST (SWALL:P11961) (427 aa) fasta scores: E(): 3.1e-29, 30.29% id in 439 aa and Rattus norvegicus dihydrolipoamide acetyltransferase DlaT SWALL:ODP2_RAT (SWALL:P08461) (555 aa) fasta scores: E(): 3.3e-47, 38.85% id in 435 aa dihydrolipoamide acetyltransferase	Dihydrolipoamide acetyltransferase	Similar to rc||pdhC sp|Q9ZD20|ODP2_RICPR; Ortholog to ERGA_CDS_00580 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex	dihydrolipoamide S-acetyltransferase	hypothetical protein, similar to dihydrolipoamide acetyltransferase, E2 component	Similar to rc||pdhC sp|Q9ZD20|ODP2_RICPR; Ortholog to ERWE_CDS_00610 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex	Dihydrolipoamide acetyltransferase, long form	ACETYL-COA + DIHYDROLIPOAMIDE = COA + S- ACETYLDIHYDROLIPOAMIDE. THE E2 COMPONENT CONTAINS ONE COVALENTLY-BOUND LIPOYL COFACTOR (BY SIMILARITY). Citation: Cabanes,D., Boistard,P., Batut,J., (2000) Mol. Plant Microbe Interact. 13:483-493 Dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase complex	Dihydrolipoamide acetyltransferase, long form	dihydrolipoamide S-acetyltransferase [Source:HGNC Symbol;Acc:2896]	transcript_id=ENSOCUT00000008005	Dihydrolipoamide acetyltransferase, long form	Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	pyruvate dehydrogenase E2 dihydrolipoamide S-acetyltransferase component EC 2.3.1.12	Dihydrolipoamide acetyltransferase, long form	Dihydrolipoamide acetyltransferase, long form	putative pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817	dihydrolipoamide acetyltransferase protein similar to pdhB (SMc01032) [Sinorhizobium meliloti] Similar to entrez-protein:Q9R9N3 Putative location:bacterial cytoplasm Psort-Score: 0.0906; go_component: pyruvate dehydrogenase complex [goid 0045254]; go_function: transferase activity [goid 0016740]; go_function: acyltransferase activity [goid 0008415]; go_function: protein binding [goid 0005515]; go_function: dihydrolipoyllysine-residue acetyltransferase activity [goid 0004742]; go_process: metabolism [goid 0008152]; go_process: glycolysis [goid 0006096]	transcript_id=ENSGACT00000027361	Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex	dihydrolipoyllysine-residue acetyltransferase co mponent of pyruvate dehydrogenase complex	pyruvate dehydrogenase E2 component COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes	dihydrolipoyllysine-residue acetyltransferase (dihydrolipoamide S-acetyltransferase)	transcript_id=ENSOGAT00000008564	
CHLTR00252	Glycogen phosphorylase	Glycogen phosphorylase	Phosphorylase	InterProMatches:IPR000811; degrades starch and glycogen by phosphorylation,Molecular Function: phosphorylase activity (GO:0004645), Biological Process: carbohydrate metabolism (GO:0005975) glycogen phosphorylase/glycosyl transferase family 35	glycogen phosphorylase	Glycogen phosphorylase	IPR000811: Glycosyl transferase, family 35 glycogen phosphorylase	similar to Salmonella typhi CT18 glycogen phosphorylase glycogen phosphorylase	Similar to Prokaryotic and Eukaryotic glycogen phosphorylase including: Escherichia coli, and Shigella flexneri glycogen phosphorylase GlgP or GlgY SWALL:PHSG_ECOLI (SWALL:P13031) (815 aa) fasta scores: E(): 1e-155, 47.46% id in 809 aa and Homo sapiens glycogen phosphorylase, brain form PygB SWALL:PHS3_HUMAN (SWALL:P11216) (843 aa) fasta scores: E(): 3.2e-175, 53.62% id in 813 aa glycogen phosphorylase	Phosphorylase	Similar to: HI1361, PHSG_HAEIN glycogen phosphorylase	Glucan phosphorylase GlgP protein	Phosphorylase	Phosphorylase	go_component: cytoplasm [goid 0005737]; go_function: glycogen phosphorylase activity [goid 0008184]; go_process: glycogen catabolism [goid 0005980] glycogen phosphorylase 1; possible glycogen phosphorylase	Glucan phosphorylase	glycogen phosphorylase	identified by similarity to SP:P13031; match to protein family HMM PF00343; match to protein family HMM TIGR02093 glycogen phosphorylase	identified by similarity to SP:P13031; match to protein family HMM PF00343; match to protein family HMM TIGR02093 glycogen phosphorylase	Phosphorylase	glycogen/starch/alpha-glucan phosphorylase	Code: G; COG: COG0058 glycogen phosphorylase	COG0058, GlgP, Glucan phosphorylase; pfam00343, phosphorylase, Carbohydrate phosphorylase. The members of this family catalyse the formation of glucose 1-phosphate from one of the following polyglucoses; glycogen, etc Citation: PMID: 10729189 (from R. sphaeroides 2.4.1).  MEDLINE 88330897 (ortholog from E. coli) glycogen phosphorylase	Code: G; COG: COG0058 glycogen phosphorylase	Phosphorylase	Glycogen/starch/alpha-glucan phosphorylase	Glycogen/starch/alpha-glucan phosphorylase	phosphorylase, glycogen, muscle [Source:HGNC Symbol;Acc:9726]	
CHLTR00253	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00254	Chromosomal replication initiator protein dnaA 1	Similar to Escherichia coli chromosomal replication initiator protein DnaA or b3702 SWALL:DNAA_ECOLI (SWALL:P03004) (467 aa) fasta scores: E(): 2.1e-31, 30.5% id in 472 aa, and to Bacillus halodurans chromosomal replication initiator protein DnaA or bh0001 SWALL:DNAA_BACHD (SWALL:Q9RCA2) (449 aa) fasta scores: E(): 5e-35, 30.68% id in 453 aa. Note also similar to CAB358 25.917% id in 436 aa overlap chromosomal replication initiator protein	chromosomal replication initiator protein	hypothetical protein similarity to COG0593 ATPase involved in DNA replication initiation(Evalue: 1E-29)	DnaA chromosomal replication initiator protein	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein DnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator DnaA domain protein	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	
CHLTR00255	Inner membrane protein oxaA	inner membrane protein	60 kDa inner membrane protein	Inner membrane protein precursor	Inner membrane protein precursor	Inner membrane protein	
CHLTR00256	Prolipoprotein diacylglyceryl transferase	prolipoprotein diacylglycerol transferase	Prolipoprotein diacylglyceryl transferase	identified by similarity to SP:P37149; match to protein family HMM PF01790; match to protein family HMM TIGR00544 prolipoprotein diacylglyceryl transferase	COG0682 protein diacylglyceryltransferase prolipoprotein diacylglyceryl transferase lgt	Prolipoprotein diacylglyceryl transferase	Similar to Salmonella typhimurium, and Salmonella typhi prolipoprotein diacylglyceryl transferase Lgt SWALL:LGT_SALTY (SWALL:Q07293) (291 aa) fasta scores: E(): 4.4e-10, 29.86% id in 298 aa and Staphylococcus aureus prolipoprotein diacylglyceryl transferase Lgt SWALL:LGT_STAAM (SWALL:P52282) (279 aa) fasta scores: E(): 3.7e-10, 29.05% id in 265 aa prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	putative prolipoprotein diacylglyceryl transferase	identified by similarity to SP:O34752; match to protein family HMM PF01790; match to protein family HMM TIGR00544 prolipoprotein diacylglyceryl transferase	Similar to Rickettsia prowazekii prolipoprotein diacylglyceryl transferase Lgt or rp046 SWALL:LGT_RICPR (SWALL:Q9ZE99) (268 aa) fasta scores: E(): 6.9e-19, 31.38% id in 274 aa, and to Bacteroides thetaiotaomicron prolipoprotein diacylglyceryl transferase BT3118 SWALL:Q8A337 (EMBL:AE016939) (281 aa) fasta scores: E(): 2.1e-104, 82.85% id in 280 aa, and to Chlorobium tepidum prolipoprotein diacylglyceryl transferase Lgt or CT1090 SWALL:Q8KDG0 (EMBL:AE012872) (289 aa) fasta scores: E(): 1.3e-25, 32.21% id in 267 aa putative prolipoprotein diacylglyceryl transferase	prolipoprotein diacylglyceryl transferase	prolipoprotein diacylglyceryl transferase identified by similarity to SP:P37149; match to protein family HMM PF01790; match to protein family HMM TIGR00544	Prolipoprotein diacylglyceryl transferase	prolipoprotein diacylglyceryl transferase identified by match to protein family HMM PF01790; match to protein family HMM TIGR00544	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	prolipoprotein diacylglyceryl transferase EC 2.4.99.-	prolipoprotein diacylglyceryl transferase identified by match to protein family HMM PF01790; match to protein family HMM TIGR00544	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	hypothetical protein similarity to COG0682 Prolipoprotein diacylglyceryltransferase(Evalue: 9E-38)	Prolipoprotein diacylglyceryl transferase	prolipoprotein diacylglyceryl transferase	prolipoprotein diacylglyceryl transferase identified by match to protein family HMM PF01790; match to protein family HMM TIGR00544	prolipoprotein diacylglyceryl transferase PFAM: prolipoprotein diacylglyceryl transferase KEGG: aba:Acid345_2869 prolipoprotein diacylglyceryl transferase	prolipoprotein diacylglyceryl transferase identified by match to protein family HMM PF01790; match to protein family HMM TIGR00544	
CHLTR00257	Putative uncharacterized protein	conserved hypothetical protein	hypothetical secreted protein	Putative lipoprotein precursor	Putative lipoprotein precursor	Putative lipoprotein	
CHLTR00258	Putative uncharacterized protein	CAAX amino terminal protease family protein identified by match to protein family HMM PF02517	conserved hypothetical protein	CaaX amino terminal protease family	Inner membrane protein	Inner membrane protein	CAAX amino terminal protease family protein	CAAX amino terminal protease family protein	Inner membrane protein	Caax amino terminal protease family protein	CAAX amino terminal protease family protein	
CHLTR00259	Putative uncharacterized protein	conserved hypothetical protein	MazG-related protein	MazG nucleotide pyrophosphohydrolase	Putative uncharacterized protein	Putative uncharacterized protein	MazG nucleotide pyrophosphohydrolase	MazG nucleotide pyrophosphohydrolase	Putative uncharacterized protein	MazG family protein	Protein with tetrapyrrole methyltransferase and pyrophosphatase domains	
CHLTR00260	Putative uncharacterized protein	Putative mg2+ or co2+ transporter protein	CorC Magnesium and cobalt efflux protein	hypothetical protein	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 CBS domain protein	hemolysin, putative	Polar amino acid transporter	Hemolysin protein	similar to hemolysin YugS	Transport protein	IPR000644: CBS domain putative membrane protein	similar to Salmonella typhi Ty2 putative membrane protein putative membrane protein	Similar to many including: Yersinia pestis putative membrane protein Ypo3298 or Y0890 SWALL:Q8ZBU4 (EMBL:AJ414156) (427 aa) fasta scores: E(): 1.9e-21, 24.1% id in 419 aa and Escherichia coli hypothetical protein YfjD or b2612/b2613 SWALL:YFJD_ECOLI (SWALL:P37908) (428 aa) fasta scores: E(): 2.9e-21, 23.98% id in 417 aa putative membrane transport protein	Putative uncharacterized protein gbs1469	identified by match to PFAM protein family HMM PF00571 CBS domain protein	Putative hemolysin	best blastp match gb|AAK33420.1| (AE006501) putative hemolysin [Streptococcus pyogenes M1 GAS] putative hemolysin	Putative Hemolysin	magnesium and cobalt efflux protein CorB	predicted membrane protein of the hemolysin C (HlyC) family	UPF0053 protein bbp_300	Putative membrane protein	CBS domain protein	hemolysin	Hemolysin-related protein	identified by match to protein family HMM PF03471 conserved hypothetical protein	CBS:Protein of unknown function DUF21:Transporter-associated region	Hemolysin C	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 CBS domain protein	
CHLTR00261	Putative uncharacterized protein	Similar to putative transport protein YtfL of Escherichia coli	similar to unknown protein hypothetical protein	conserved gene metal ion transporter	similar to unknown protein hypothetical protein	identified by match to protein family HMM PF00571; match to protein family HMM PF01595 CBS domain protein	Hemolysin	Similar to many proteins of undefined function inluding: Coxiella burnetii hypothetical protein Cbu0452 SWALL:Q83E77 (EMBL:AE016961) (417 aa) fasta scores: E(): 2.2e-12, 21.79% id in 413 aa and to Escherichia coli hypothetical protein YfjD or b2612/b2613 SWALL:YFJD_ECOLI (SWALL:P37908) (428 aa) fasta scores: E(): 3.4e-09, 21.22% id in 410 aa putative membrane transport protein	Putative uncharacterized protein	similar to BR2027, CBS domain protein CBS domain protein	Putative	Hemolysin, putative	Similar to rc||RC1079 rp||RP702 sp|Q57017|YFJD_HAEIN sp|P37908|YFJD_ECOLI sp|P74409|Y260_SYNY3 sp|P54505|YQHB_BACSU sp|O05241|YUGS_BACSU; Ortholog to ERGA_CDS_02040 Conserved hypothetical protein	Similar to: HI0452, YTFL_HAEIN conserved hypothetical protein	Metal ion transporter, putative	Similar to Q88C61 putative metal ion transporter from Pseudomonas putida (446 aa). FASTA: opt: 1033 Z-score: 1180.6 E(): 6.5e-58 Smith-Waterman score: 1035; 40.455 identity in 440 aa overlap ORF ftt1628c metal ion transporter	conserved hypothetical protein	Similar to rc||RC1079 rp||RP702 sp|Q57017|YFJD_HAEIN sp|P37908|YFJD_ECOLI sp|P74409|Y260_SYNY3 sp|P54505|YQHB_BACSU sp|O05241|YUGS_BACSU; Ortholog to ERWE_CDS_02090 Conserved hypothetical protein	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 hemolysin	CBS domain: protein of unknown function DUF21:Transporter associated domain	CBS domain:CBS:Transporter associated domain	probable hemolysin	putative transporter, HlyC/CorC (HCC) family identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471	conserved hypothetical protein	putative transporter, HlyC/CorC (HCC) family identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471	protein of unknown function DUF21	protein of unknown function DUF21	putative transmembrane CBS domain family protein similarity:fasta; with=UniProt:Q92ME8_RHIME (EMBL:SME591791); Rhizobium meliloti (Sinorhizobium meliloti).; HYPOTHETICAL TRANSMEMBRANE PROTEIN.; length=434; id 79.343; 426 aa overlap; query 7-432; subject 6-431	hemolysin	
CHLTR00262	NifS family of pyridoxal phosphate-dependent enzymes	Iron-sulfur cofactor synthesis protein homolog	YfhO protein	Cysteine desulfurase	Cysteine desulfurase	Selenocysteine lyase Cysteine desulfhydrase	aminotransferase (class V), putative	iron-sulfur cofactor synthesis protein homolog; Biological Process: metabolism (GO:0008152), Molecular Function: transaminase activity (GO:0008483) Aminotransferase, class V	YrvO cysteine desulfurase iron-sulfur cofactor synthesis protein	Pyridoxal-phosphate dependent aminotransferase NifS	IPR000192: Aminotransferase, class V putative aminotransferase class-V	Cysteine sulfinate desulfinase/cysteine desulfurase	similar to Salmonella typhi CT18 putative L-cysteine desulfurase putative L-cysteine desulfurase	Similar to many aminotransferases including: Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri cysteine desulfurase IscS or b2530 or c3056 or z3797 or ecs3396 or sf2577 or s2749 SWALL:ISCS_ECOLI (SWALL:P39171) (404 aa) fasta scores: E(): 9.4e-25, 30.1% id in 382 aa and to Neisseria meningitidis cysteine desulfurase IscS or nmb1379 SWALL:ISCS_NEIMB (SWALL:Q9JYY0) (404 aa) fasta scores: E(): 8.1e-25, 30.72% id in 384 aa putative cysteine desulfurase	Cysteine desulfurase	Putative uncharacterized protein gbs1165	iron-sulfur cofactor synthesis protein homolog	identified by match to PFAM protein family HMM PF00266 cysteine desulphurase	Ortholog of S. aureus MRSA252 (BX571856) SAR1702 putative cysteine desulfurase	iron-sulfur cofactor synthesis protein homolog	Cysteine desulfhydrase	best blastp match gb|AAK33997.1| (AE006555) putative iron-sulfur cofactor synthesis protein [Streptococcus pyogenes M1 GAS] putative iron-sulfur cofactor synthesis protein	Similar to rp||spl1 rc||spl1 sp|O54055|ISCS_RUMFL sp|P12623|NIFS_ANASP; Ortholog to ERGA_CDS_04240 Cysteine desulfurase (NifS protein homolog) duplication	COG1104 cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes cysteine desulfurase	Putative Pyridoxal-phosphate dependent aminotransferase	selenocysteine lyase cysteine desulfhydrase	Similar to: HI0378, ISCS_HAEIN cysteine desulfurase	Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes NifS protein	aminotransferase (class V), putative	
CHLTR00263	PP2C phosphatase family	identified by match to protein family HMM PF00481 protein phosphatase 2C domain protein	Protein phosphatase	probable protein phosphatase	Putative PP2C protein phosphatase	serine/threonine protein phosphatase	COG0631 Serine-threonine protein phosphatase protein serine-threonine phosphatase	Putative uncharacterized protein TTHA0187	Protein serine/threonine phosphatase	Similar to many proteins including: Myxococcus xanthus protein phosphatase 1 Pph1 SWALL:Q9KIU5 (EMBL:AF223364) (254 aa) fasta scores: E(): 2.7e-26, 36.88% id in 244 aa and to Bacillus anthracis protein phosphatase 2c-family protein ba4001 SWALL:Q81WH5 (EMBL:AE017036) (250 aa) fasta scores: E(): 1.4e-23, 39.07% id in 238 aa putative phosphatase	Putative uncharacterized protein gbs0306	identified by match to PFAM protein family HMM PF00481 serine/threonine phosphatase, putative	serine/threonine protein phosphatase family protein	Similar to Streptomyces coelicolor hypothetical protein SCO3845 or SCH69.15 SWALL:Q9XA19 (EMBL:AL079308) (515 aa) fasta scores: E(): 5.4e-22, 35.98% id in 239 aa, and to Rhizobium loti probable phosphoprotein phosphatase mlr2361 SWALL:Q98IK3 (EMBL:AP002999) (280 aa) fasta scores: E(): 1.4e-20, 36.08% id in 230 aa conserved hypothetical protein	protein phosphatase 2C	hypothetical protein, similar to PP2C protein phosphatase	Protein phosphatase 2C-like	Protein phosphatase 2C-like	identified by similarity to GB:AAL58473.1; match to protein family HMM PF00481 serine/threonine protein phosphatase Stp1	identified by match to protein family HMM PF00481 putative serine/threonine protein phosphatase	Putative serine/threonine protein phosphatase	Protein phosphatase 2C-like	protein serine/threonine phosphatases	protein serine/threonine phosphatases	Serine/threonine protein phosphatase COG0631	Protein phosphatase 2C COG0631 [T] Serine/threonine protein phosphatase	PP2C-like serine/threonine phosphatase EC 3.1.3.16	protein serine/threonine phosphatases	Serine/threonine protein phosphatase	
CHLTR00264	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00265	DNA Pol III Epsilon Chain	Similar to Treponema pallidum DNA polymerase III, epsilon chain DnaQ or tp0643 SWALL:DP3E_TREPA (SWALL:O83649) (215 aa) fasta scores: E(): 1.1e-12, 34.59% id in 185 aa, and to Chlamydia muridarum DNA polymerase III, epsilon subunit, putative tc0532 SWALL:Q9PKD3 (EMBL:AE002322) (232 aa) fasta scores: E(): 1.7e-63, 69.69% id in 231 aa DNA polymerase III, epsilon chain	hypothetical protein	Exonuclease	DNA polymerase III, epsilon subunit KEGG: dra:DR0856 DNA polymerase III, epsilon subunit, putative, ev=4e-63, 68% identity TIGRFAM: DNA polymerase III, epsilon subunit: (5e-07) PFAM: Exonuclease, RNase T and DNA polymerase III: (1.8e-39) SMART: Exonuclease: (7.9e-47)	DNA polymerase III epsilon chain EC 2.7.7.7	DNA polymerase III, epsilon subunit	DNA polymerase III epsilon subunit	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	DNA-directed DNA polymerase	DNA polymerase III, epsilon chain	Putative DNA polymerase/helicase	DNA Pol III epsilon chain	DNA polymerase III epsilon chain	DNA polymerase III epsilon subunit	DNA polymerase III, epsilon subunit	Putative DNA polymerase III epsilon subunit	DNA polymerase III, epsilon subunit	DNA polymerase III, epsilon chain	DNA polymerase III, epsilon chain	DNA polymerase III, epsilon subunit	DNA-directed DNA polymerase	DNA polymerase III, epsilon subunit	Exonuclease, RNase T and DNA polymerase III	DNA polymerase III, epsilon subunit	Putative DNA polymerase III, epsilon chain	Exonuclease	DNA polymerase III epsilon subunit	DNA polymerase III, epsilon subunit	
CHLTR00266	Putative uncharacterized protein	conserved hypothetical protein	Putative uncharacterized protein TTHA1568	Similar to Chlamydia trachomatis hypothetical protein Ct262 SWALL:O84264 (EMBL:AE001299) (256 aa) fasta scores: E(): 8.2e-55, 54.72% id in 254 aa, and to Deinococcus radiodurans hypothetical protein Dr1011 SWALL:Q9RVL6 (EMBL:AE001953) (301 aa) fasta scores: E(): 6.5e-26, 35.15% id in 256 aa conserved hypothetical protein	Putative uncharacterized protein	Putative	Predicted periplasmic solute-binding protein	Putative uncharacterized protein	protein of unknown function DUF191	protein of unknown function DUF191	Putative uncharacterized protein	protein of unknown function DUF191 PFAM: protein of unknown function DUF191: (6e-72) KEGG: dra:DR1011 hypothetical protein, ev=1e-113, 76% identity	conserved hypothetical protein	protein of unknown function DUF191	hypothetical protein	Conserved hypothetical protein outer membrane protein	protein of unknown function DUF191 PFAM: protein of unknown function DUF191 KEGG: aba:Acid345_3445 protein of unknown function DUF191	Conserved hypothetical protein outer membrane protein	conserved hypothetical protein identified by match to protein family HMM PF02642	conserved hypothetical protein	conserved hypothetical protein Function unclear	protein of unknown function DUF191 PFAM: protein of unknown function DUF191 KEGG: fra:Francci3_4422 protein of unknown function DUF191	protein of unknown function DUF191 PFAM: protein of unknown function DUF191 KEGG: gme:Gmet_3380 protein of unknown function DUF191	hypothetical cytosolic protein	Hypothetical protein	conserved hypothetical protein identified by match to protein family HMM PF02642	Hypothetical protein	protein of unknown function DUF191	Hypothetical protein	
CHLTR00267	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00268	Transport ATP Binding Protein	ABC transporter, ATP-binding protein	ABC transporter related	ABC transporter, ATP-binding and membrane components precursor	ABC transporter, ATP-binding and membrane components precursor	ABC-type multidrug transport system ATPase and permease component	ABC transporter related	ABC transporter ATP-binding/permease protein	ABC transporter, ATP-binding and membrane components	
CHLTR00269	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	acetyl-CoA carboxylase carboxyl transferase subunit alpha	conserved gene acetyl CoA carboxylase, carboxyltransferase, alpha subunit	acetyl-CoA carboxylase carboxyl transferase subunit alpha	Acetyl-CoA carboxylase, carboxyl transferase subunit alpha	identified by match to protein family HMM PF03255; match to protein family HMM TIGR00513 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	acetyl-CoA carboxylase alpha subunit	identified by similarity to SP:P30867; match to protein family HMM PF03255; match to protein family HMM TIGR00513 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	acetyl-CoA carboxylase carboxyl transferase subunit alpha	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Acetyl-CoA carboxylase carboxyl transferase subunit alpha	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	identified by match to protein family HMM PF03255; match to protein family HMM TIGR00513 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	Acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	InterProMatches:IPR001095; Molecular Function: acetyl-CoA carboxylase activity (GO:0003989), Biological Process: fatty acid biosynthesis (GO:0006633), Cellular Component: acetyl-CoA carboxylase complex (GO:0009317) acetyl CoA carboxylase (alpha subunit)	acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark acetyl-coenzyme A carboxylase carboxyl transferase	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	IPR001095: Acetyl-CoA carboxylase, alpha subunit acetylCoA carboxylase, carboxytransferase component, alpha subunit	similar to Salmonella typhi CT18 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha AccA or b0185 SWALL:ACCA_ECOLI (SWALL:P30867) (318 aa) fasta scores: E(): 2.8e-52, 44.44% id in 315 aa, Chlamydia trachomatis accoa carboxylase/transferase alpha AccA or ct265 SWALL:O84267 (EMBL:AE001299) (324 aa) fasta scores: E(): 1e-118, 89.81% id in 324 aa and Synechococcus sp.  acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha AccA SWALL:ACCA_SYNP7 (SWALL:Q54766) (327 aa) fasta scores: E(): 3.1e-56, 47.31% id in 317 aa acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	
CHLTR00270	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00271	Probable DNA-binding protein HU	Integration host factor subunit beta	Integration host factor subunit alpha	identified by match to protein family HMM PF00216; match to protein family HMM TIGR00987 integration host factor, alpha subunit	Integration host factor subunit beta	InterProMatches:IPR000119; involved in DNA repair, homologous recombination, and presecretory protein translocation,Molecular Function: DNA binding (GO:0003677) non-specific DNA-binding protein HBsu signal recognition particle-like (SRP) component	DNA-binding protein II DNA-binding protein HU	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark integration host factor beta subunit	DNA-binding protein HU	IPR000119: Histone-like bacterial DNA-binding protein integration host factor (IHF), beta subunit; site-specific recombination	similar to Salmonella typhi CT18 integration host factor beta-subunit (IHF-beta) integration host factor beta-subunit (IHF-beta)	Similar to many including: Haemophilus influenzae integration host factor alpha-subunit IhfA or HimA or Hi1313 SWALL:IHFA_HAEIN (SWALL:P43723) (96 aa) fasta scores: E(): 1.7e-06, 30.85% id in 94 aa and to Chlamydia pneumoniae probable DNA-binding protein HU Hup or cpn0416 or cp0338 SWALL:DBH_CHLPN (SWALL:Q9Z8C7) (100 aa) fasta scores: E(): 2.7e-36, 98% id in 100 aa integration host factor alpha-subunit	Integration host factor subunit beta	DNA-binding protein	Integration host factor subunit beta	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type f : factor integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replication	conserved family - putative DNA binding protein hypothetical protein	Integration host factor subunit beta	IHF-beta; COG0776 integration host factor beta-subunit	Similar to Q93TM3 Histone-like protein HU form B from Pseudomonas putida (strain KT2440) (90 aa). FASTA: opt: 380 Z-score: 519.0 E(): 5.2e-21 Smith-Waterman score: 380; 68.539 identity in 89 aa overlap. Histone-like protein HU form B	DNA-binding protein HU	Integration host factor subunit beta	integration host factor beta-subunit (ihf-beta)	integration host factor beta subunit	identified by match to protein family HMM PF00216; match to protein family HMM TIGR00988 integration host factor, beta subunit	DNA-binding protein HU	Bacterial nucleoid DNA-binding protein	identified by match to protein family HMM PF00216; match to protein family HMM TIGR00987 integration host factor, alpha subunit	Integration host factor, alpha subunit	
CHLTR00272	N-Acetylmuramoyl Alanine Amidase	N-acetylmuramoyl-l-alanine amidase I	similar to Salmonella typhi CT18 probable N-acetylmuramoyl-L-alanine amidase probable N-acetylmuramoyl-L-alanine amidase	Weakly similar to Thermoanaerobacter tengcongensis N-acetylmuramoyl-L-alanine amidase AmiC2 or tte2424 SWALL:Q8R7I3 (EMBL:AE013184) (219 aa) fasta scores: E(): 1.9e-18, 35.74% id in 207 aa and to Bacillus subtilis N-acetylmuramoyl-L-alanine amidase CwlB precursor SWALL:CWLB_BACSU (SWALL:Q02114) (496 aa) fasta scores: E(): 6.8e-16, 34.06% id in 182 aa probable N-acetylmuramoyl-L-alanine amidase	identified by similarity to OMNI:NTL01LI0174; match to protein family HMM PF01520 N-acetylmuramoyl-L-alanine amidase, family 3	Putative N-acetylmuramoyl-L-alanine amidase	Probable N-acetylmuramoyl-L-alanine amidase amiA	N-acetylmuramoyl-L-alanine amidase	N-acetylmuramoyl-L-alanine amidase	N-acetylmuramoyl-L-alanine amidase	Code: M; COG: COG0860 N-acetylmuramoyl-l-alanine amidase I	identified by similarity to SP:Q02114; match to protein family HMM PF01520 N-acetylmuramoyl-L-alanine amidase	Code: M; COG: COG0860 N-acetylmuramoyl-l-alanine amidase I	N-acetylmuramoyl-L-alanine amidase	Code: M; COG: COG0860 N-acetylmuramoyl-l-alanine amidase I	N-acetylmuramoyl-L-alanine amidase EC 3.5.1.28	Probable N-acetylmuramoyl-L-alanine amidase	N-acetylmuramoyl-L-alanine amidase identified by match to protein family HMM PF01520; match to protein family HMM TIGR02883	N-acetylmuramoyl-L-alanine amidase identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883	Probable N-acetylmuramoyl-L-alanine amidase AmiA	N-acetylmuramoyl-L-alanine amidase	N-acetylmuramoyl-L-alanine amidase COG0860 N-acetylmuramoyl-L-alanine amidase	N-acetylmuramoyl-L-alanine amidase	N-acetylmuramoyl-L-alanine amidase, family 3 identified by match to protein family HMM PF01520	N-acetylmuramoyl-L-alanine amidase	N-acetylmuramoyl-L-alanine amidase	N-acetylmuramoyl-L-alanine amidase	N-acetylmuramoyl-l-alanine amidase I Code: M; COG: COG0860	N-acetylmuramoyl-L-alanine amidase	
CHLTR00273	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	Similar to UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase hypothetical protein	conserved gene UDP-N-acetylmuramyl-tripeptide synthetase MurE	Similar to UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase hypothetical protein	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01085 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase	UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01085 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase (UDP-MurNac-tripeptide synthetase)	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelateligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	identified by similarity to SP:Q59650; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01085 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramoylalanyl-D-glutamate--2	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	Mb2182c, murE, len: 535 aa. Equivalent to Rv2158c, len: 535 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 535 aa overlap). Probable murE, UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (EC 6.3.2.13; UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE) also related to other Mycobacterium tuberculosis mur gene products. FASTA best: MURE_BACSU Q03523 (494 aa) opt: 1020 z- score: 1110.1 E(): 0; (40.1% identity in 476 aa overlap) Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE	InterProMatches:IPR005761; Cellular Component: cytoplasm (GO:0005737), Biological Process: cell wall biosynthesis (sensu Bacteria) (GO:0009273), Molecular Function: acid-D-amino acid ligase activity (GO:0016881) UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase	UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase	MurE COG0769 UDP-N-acetylmuramyl tripeptide synthase UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine ligase	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase	
CHLTR00274	Transglycolase/transpeptidase	Probable penicillin-binding 3 pbp-3 transmembrane protein	Peptidoglycan synthetase ftsI	identified by similarity to SP:P11882; match to protein family HMM PF00905; match to protein family HMM PF03717 penicillin-binding protein	Penicillin-binding protein 3	Penicillin binding protein 3	sporulation specific penicillin-binding protein stage V sporulation protein D	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark penicillin-binding protein 3	Similar to Neisseria meningitidis penicillin-binding protein 2 PenA or Nma2072 or Nmb0413 SWALL:PBP2_NEIMA (SWALL:P11882) (581 aa) fasta scores: E(): 1.1e-11, 28.75% id in 546 aa, and to Buchnera aphidicola peptidoglycan synthetase FtsI or bu222 SWALL:FTSI_BUCAI (SWALL:P57317) (579 aa) fasta scores: E(): 2e-10, 26.57% id in 621 aa probable penicillin-binding protein	Putative uncharacterized protein	Penicillin-binding protein 3	PENICILLIN-BINDING PROTEIN	Penicillin-binding protein 2	Penicillin-binding protein 3	Penicillin-binding protein 2X	Similar to Q83F33 Penicillin-binding protein 3 from Coxiella burnetii (548 aa). FASTA: opt: 1361 Z-score: 1597.9 E(): 4.1e-81 Smith-Waterman score: 1361; 40.325 identity in 553 aa overlap. penicillin binding protein (peptidoglycan synthetase)	penicillin-binding protein 3 Cell division protein FtsI	Peptidoglycan synthetase ftsI	Similar to Bacillus subtilis penicillin-binding protein 2b PbpB SWALL:PBPB_BACSU (SWALL:Q07868) (716 aa) fasta scores: E(): 2.4e-32, 27.68% id in 596 aa, and to Streptomyces coelicolor FtsI SWALL:Q9Z5V7 (EMBL:AF123319) (651 aa) fasta scores: E(): 8.1e-44, 30.62% id in 604 aa penicillin-binding protein	penicillin-binding 3 precursor PBP-3 transmembrane protein	penicillin-binding protein 3	penicillin-binding protein 2 cell division protein FtsI	Cell division protein FtsI	penicillin-binding protein 1	identified by similarity to SP:P04286; match to protein family HMM PF00905; match to protein family HMM PF03717 peptidoglycan glycolsyltranferase FtsI	identified by match to protein family HMM PF00905; match to protein family HMM PF03717 penicillin-binding protein	Peptidoglycan glycosyltransferase	Best Blastp Hit: pir||S49090 penicillin-binding protein 2 - Neisseria gonorrhoeae >gi|509155|emb|CAA42191.1| (X59632) penicillin-binding protein 2 [Neisseria gonorrhoeae] COG0768 Cell division protein; Pbp2 penicillin-binding protein 2	Peptidoglycan glycosyltransferase	
CHLTR00275	Putative uncharacterized protein	conserved hypothetical protein	hypothetical membrane associated protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00276	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	conserved hypothetical protein	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	Similar to S-adenosyl-methyltransferase MraW hypothetical protein	conserved gene S-adenosylmethyl transferase MraW	Similar to S-adenosyl-methyltransferase MraW hypothetical protein	S-adenosyl-L-methionine-dependent methyltransferase mraW	identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 S-adenosyl-methyltransferase MraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	MraW S-adenosyl-methyltransferase	hypothetical protein	identified by similarity to SP:P60391; match to protein family HMM PF01795; match to protein family HMM TIGR00006 S-adenosyl-methyltransferase MraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosylmethionine-dependent methyltransferase, putative	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 S-adenosyl-methyltransferase MraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-methyltransferase protein	S-adenosyl-L-methionine-dependent methyltransferase mraW	Mb2189c, -, len: 396 aa. Equivalent to Rv2165c, len: 396 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 396 aa overlap). Conserved hypothetical protein; shows strong similarity to several hypothetical bacterial proteins but has extra 80 aa residues at N-terminus FASTA best: YLXA_BACSU Q07876 hypothetical 35.3 kd protein in ftsl (311 aa) opt: 781, E(): 0; (45.6% identity in 296 aa overlap), BELONGS TO THE YABC (E.COLI), YLXA (B.SUBTILIS) FAMILY CONSERVED HYPOTHETICAL PROTEIN	conserved protein; Molecular Function: methyltransferase activity (GO:0008168) putative methyltransferase	
CHLTR00277	Uncharacterized protein CT_273	hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00278	Putative uncharacterized protein	conserved hypothetical protein	tetratricopeptide repeat family protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00279	Chromosomal replication initiator protein dnaA 2	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein DnaA	conserved gene chromosomal replication initiator protein DnaA	Chromosomal replication initiator protein DnaA	Chromosomal replication initiator protein dnaA	identified by similarity to EGAD:14548; match to protein family HMM PF00308; match to protein family HMM TIGR00362 chromosomal replication initiator protein DnaA	Chromosomal replication initiator protein dnaA	DnaA chromosomal replication initiator protein	transcriptional regulator chromosomal replication initiator protein DnaA	Chromosomal replication initiator protein dnaA	chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	identified by similarity to SP:P05648; match to protein family HMM PF00308; match to protein family HMM TIGR00362 chromosomal replication initiator protein DnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Mb0001, dnaA, len: 507 aa. Equivalent to Rv0001, len: 507 aa, from Mycobacterium tuberculosis strain H37Rv, (99.6% identity in 507 aa overlap). dnaA, chromosomal replication initiator protein (see citations below), equivalent to other Mycobacterial CHROMOSOMAL REPLICATION INITIATOR PROTEINS e.g. P46388|DNAA_MYCLE from Mycobacterium leprae (502 aa); Q9L7L7|DNAA_MYCPA from Mycobacterium paratuberculosis (509 aa); P49990|DNAA_MYCAV from Mycobacterium avium (508 aa); P49992|DNAA_MYCSM from Mycobacterium smegmatis (504 aa); etc. Also highly similar to others except in N-terminus e.g. Q9ZH75|DNAA_STRCH CHROMOSOMAL REPLICATION INITIATOR PROTEIN from Streptomyces chrysomallus (624 aa); Q9ZH76|DNAA_STRRE from Streptomyces reticuli (643 aa); DNAA_ECOLI|P03004|B3702 chromosomal replication initiator protein from Escherichia coli strain K12 (467 aa), FASTA scores: opt: 986, E(): 0, (43.2% identity in 389 aa overlap); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop) and PS01008 DnaA protein signature. BELONGS TO THE DNAA FAMILY. Note that the first base of this gene has been taken as base 1 of the Mycobacterium bovis genomic sequence. CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA	InterProMatches:IPR001957; initiation of chromosome replication, Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA replication origin binding (GO:0003688), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication initiation (GO:0006270), Biological Process: regulation of DNA DnaA	chromosome replication initiator protein DnaA	DnaA chromosomal replication initiator protein	Chromosomal replication initiator protein dnaA	
CHLTR00281	Putative uncharacterized protein	conserved hypothetical protein	hypothetical membrane associated protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00280	Putative uncharacterized protein	Integral membrane protein CcmA involved in cell shape determination	conserved hypothetical protein	protein of unknown function DUF583	transporter	Hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00282	Probable Na(+)-translocating NADH-quinone reductase subunit B	Na+-translocating NADH:ubiquinone oxidoreductase subunit Nrq2	Na(+)-translocating NADH-quinone reductase, chain B	identified by match to protein family HMM PF03116; match to protein family HMM TIGR01937 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit	Similar to Pseudomonas aeruginosa or pa2998 SWALL:NQRB_PSEAE (SWALL:Q9HZK7) (403 aa) fasta scores: E(): 1.4e-30, 34.51% id in 507 aa, and to Pasteurella multocida Na+-translocating NADH-quinone reductase subunit B, NqrB or Pm1329 SWALL:NQRB_PASMU (SWALL:Q9CLB0) (410 aa) fasta scores: E(): 1.1e-28, 37.03% id in 513 aa Na+-translocating NADH-quinone reductase subunit B	NADH-ubiquinone oxidoreductase subunit B	Putative Na(+)-translocating NADH-ubiquinone reductase subunit B	Na(+)-translocating NADH-quinone reductase, B subunit	Na(+)-translocating NADH-quinone reductase subunit B	Na(+)-translocating NQR subunit B; Na(+)-NQR subunit B; NQR complex subunit B; NQR-1 subunit B; Similar to: HI0166, NQRB_HAEIN Na(+)-translocating NADH-quinone reductase subunit B	Similar to Vibrio harveyi Na+-translocating NADH-quinone reductase NqrB SWALL:NQRB_VIBHA (SWALL:Q9RFW0) (413 aa) fasta scores: E(): 2.1e-50, 41.54% id in 414 aa, and to Bacteroides thetaiotaomicron Na+-translocating NADH-quinone reductase subunit BT1159 SWALL:AAO76266 (EMBL:AE016930) (390 aa) fasta scores: E(): 1.3e-135, 86.48% id in 392 aa, and to Pseudomonas aeruginosa Na+-translocating NADH-quinone reductase NqrB or pa2998 SWALL:NQRB_PSEAE (SWALL:Q9HZK7) (403 aa) fasta scores: E(): 4.2e-51, 44.74% id in 409 aa putative Na+-translocating NADH-quinone reductase subunit B	Na+-transporting NADHubiquinone oxidoreductase subunit 2 NqrB protein	Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB	identified by match to protein family HMM PF03116; match to protein family HMM TIGR01937 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit	Na+-translocating NADH-ubiquinone oxidoreductase, subunit B NADH dehydrogenase	Best Blastp Hit: pir||H81918 probable sodium-translocating NADH dehydrogenase (ubiquinone) (EC 1.6.5.-) chain B NMA0751 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379472|emb|CAB84034.1| (AL162754) putative Na(+)-translocating NADH-ubiquinone reductase subunit B [Neisseria meningitidis] COG1805 Uncharacterized membrane protein, RnfD; NqrB putative Na(+)-translocating NADH-ubiquinone reductase subunit B	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 7805867, 9490015, 10838078, 11248188; Product type t : transporter Na(+)-translocating NADH-quinone reductase subunit B (Na(+)-translocating NQR subunit B) (Na(+)-NQR subunit B) (NQR complex subunit B)	NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit	NADH:ubiquinone oxidoreductase, subunit B	NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit TIGRFAMsMatches:TIGR01937	Na (+)-translocating NADH-quinone reductase subunit B EC 1.6.5.-	NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit: (2.6e-204) PFAM: NQR2 and RnfD: (1.3e-138) KEGG: sil:SPOA0029 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit, ev=0.0, 81% identity	NADH:ubiquinone oxidoreductase, Na(+)- translocating, B subunit precursor	Na+-translocating NADH:ubiquinone oxidoreductase subunit B	NADH-ubiquinone oxidoreductase subunit B precursor	Na+-translocating NADH:ubiquinone oxidoreductase subunit Nrq2	NADH:ubiquinone oxidoreductase, subunit B precursor	Na-translocating NADH-quinone reductase subunit B	Na(+)-translocating NADH-quinone reductase, subunit B	
CHLTR00283	Probable Na(+)-translocating NADH-quinone reductase subunit C	Na (+)-translocating NADH-quinone reductase subunit C EC 1.6.5.-	NADH:ubiquinone oxidoreductase, Na(+)- translocating, C subunit precursor	NADH:ubiquinone oxidoreductase, subunit C precursor	Na(+)-translocating NADH-quinone reductase subunit C	Na(+)-translocating NADH-quinone reductase subunit C precursor	Na(+)-translocating NADH-quinone reductase subunit C precursor	Na(+)-translocating NADH-quinone reductase subunit C	NADH:ubiquinone oxidoreductase, Na(+)- translocating, C subunit	
CHLTR00284	Probable Na(+)-translocating NADH-quinone reductase subunit D	RnfA-Nqr electron transport subunit	Na(+)-translocating NADH-quinone reductase subunit D	identified by similarity to SP:P77179; similarity to PIR:S65529; match to protein family HMM PF02508; match to protein family HMM TIGR01939 NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit	Similar to Vibrio harveyi Na+-translocating NADH-quinone reductase subunit D, NqrD SWALL:NQRD_VIBHA (SWALL:Q9RFV8) (210 aa) fasta scores: E(): 1.1e-38, 50.95% id in 210 aa, and to Haemophilus influenzae a+-translocating NADH-quinone reductase subunit D, NqrD or hi0168 SWALL:NQRD_HAEIN (SWALL:P43958) (208 aa) fasta scores: E(): 1.5e-36, 48.35% id in 213 aa Na+-translocating NADH-quinone reductase subunit D	Na(+)-translocating NADH-quinone reductase subunit D	Putative Na(+)-translocating NADH-ubiquinone reductase subunit D	Na(+)-translocating NADH-quinone reductase, D subunit	Na(+)-translocating NADH-quinone reductase subunit D	Na(+)-translocating NQR subunit D; Na(+)-NQR subunit D; NQR complex subunit D; NQR-1 subunit D; Similar to: HI0168, NQRD_HAEIN Na(+)-translocating NADH-quinone reductase subunit D	Similar to Haemophilus influenzae Na+-translocating NADH-quinone reductase NqrD or hi0168 SWALL:NQRD_HAEIN (SWALL:P43958) (208 aa) fasta scores: E(): 1.8e-41, 56.93% id in 202 aa, and to Bacteroides thetaiotaomicron Na+-translocating NADH-quinone reductase subunit BT1157 SWALL:AAO76264 (EMBL:AE016930) (213 aa) fasta scores: E(): 9.1e-71, 88.62% id in 211 aa, and to Yersinia pestis Na+-translocating NADH-quinone reductase NqrD or YPO3237 or Y0954 SWALL:NQRD_YERPE (SWALL:Q8ZBZ3) (209 aa) fasta scores: E(): 1.1e-40, 56.06% id in 198 aa putative Na+-translocating quinone reductase subunit D	Na+-transporting NADHubiquinone oxidoreductase subunit 4 NqrD protein	Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD	identified by match to protein family HMM PF02508; match to protein family HMM TIGR01939 NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit	Na+-translocating NADH-ubiquinone oxidoreductase, subunit D	Best Blastp Hit: pir||F81918 probable Na(+)-translocating NADH-ubiquinone reductase subunit D NMA0749 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379470|emb|CAB84032.1| (AL162754) putative Na(+)-translocating NADH-ubiquinone reductase subunit D [Neisseria meningitidis] COG1347 Na+-translocating NADH-quinone; NqrD putative Na(+)-translocating NADH-ubiquinone reductase subunit D	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 7805867, 9490015, 11248188; Product type t : transporter Na(+)-translocating NADH-quinone reductase subunit D (Na(+)-translocating NQR subunit) ( Na(+)-NQR subunit D) (NQR complex subunit D)	NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit	NADH:ubiquinone oxidoreductase, subunit D	NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit TIGRFAMsMatches:TIGR01939	Na (+)-translocating NADH-quinone reductase subunit D EC 1.6.5.-	NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit: (1.1e-144) PFAM: RnfA-Nqr electron transport subunit: (1.1e-86) KEGG: sil:SPOA0031 NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit, ev=1e-104, 86% identity	NADH:ubiquinone oxidoreductase, Na(+)- translocating, D subunit	NADH:ubiquinone oxidoreductase, subunit D	Na+-translocating NADH:uniquinone oxidoreductase subunit D	Na+-translocating NADH-quinone reductase subunit D	NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit	NADH:ubiquinone oxidoreductase, subunit D	Na-translocating NADH-quinone reductase subunit D	
CHLTR00285	Probable Na(+)-translocating NADH-quinone reductase subunit E	Na(+)-translocating NADH-quinone reductase subunit E	Na(+)-translocating NADH-quinone reductase subunit E	identified by similarity to SP:Q8DBJ2; match to protein family HMM PF02508; match to protein family HMM TIGR01940 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit	Similar to Haemophilus influenzae Na+-translocating NADH-quinone reductase subunit E, NqrE or hi0170 SWALL:NQRE_HAEIN (SWALL:P71342) (198 aa) fasta scores: E(): 3.3e-31, 48.48% id in 198 aa, and to Pasteurella multocida Na+-translocating NADH-quinone reductase subunit E NqrE or pm1332 SWALL:NQRE_PASMU (SWALL:Q9CLA7) (198 aa) fasta scores: E(): 1.3e-32, 50% id in 198 aa. Note the C-terminal extension of this protein. Na+-translocating NADH-quinone reductase subunit E	Putative Na(+)-translocating NADH-ubiquinone reductase subunit E	Na(+)-translocating NADH-quinone reductase subunit E	Na(+)-translocating NQR subunit E; Na(+)-NQR subunit E; NQR complex subunit E; NQR-1 subunit E; Similar to: HI0170, NQRE_HAEIN Na(+)-translocating NADH-quinone reductase subunit E	Similar to Haemophilus influenzae Na+-translocating NADH-quinone reductase NqrE or hi0170 SWALL:NQRE_HAEIN (SWALL:P71342) (198 aa) fasta scores: E(): 2.1e-29, 62.01% id in 208 aa, and to Bacteroides thetaiotaomicron Na+-translocating NADH-quinone reductase subunit BT1156 SWALL:AAO76263 (EMBL:AE016930) (208 aa) fasta scores: E(): 4.9e-66, 91.34% id in 208 aa, and to Shewanella oneidensis NADH:ubiquinone oxidoreductase, Na+-translocating, hydrophobic membrane protein NqrE Nqre-2 or so1107 SWALL:Q8EHV5 (EMBL:AE015555) (202 aa) fasta scores: E(): 2.7e-37, 54.24% id in 212 aa Na+-translocating NADH-quinone reductase subunit E	Na+-transporting NADHubiquinone oxidoreductase subunit 5 NqrE protein	Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE	identified by match to protein family HMM PF02508; match to protein family HMM TIGR01940 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit	Na+-translocating NADH-ubiquinone oxidoreductase, subunit E	Best Blastp Hit: pir||E81918 probable Na(+)-translocating NADH-ubiquinone reductase subunit E (EC 1.6.5.-) NMA0748 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379469|emb|CAB84031.1| (AL162754) putative Na(+)-translocating NADH-ubiquinone reductase subunit E [Neisseria meningitidis] COG2209 Na+-translocating NADH-quinone; NqrE putative Na(+)-translocating NADH-ubiquinone reductase subunit E	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 7805867, 9490015, 11248188; Product type t : transporter Na(+)-translocating NADH-quinone reductase subunit E (Na(+)-translocating NQR subunit E) (Na(+)-NQR subunit E) (NQR complex subunit E)	NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit	NADH:ubiquinone oxidoreductase, subunit E	electron transport complex protein RnfA	NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit TIGRFAMsMatches:TIGR01940	Na (+)-translocating NADH-quinone reductase subunit E EC 1.6.5.-	NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit: (2.3e-139) PFAM: RnfA-Nqr electron transport subunit: (1.4e-95) KEGG: sil:SPOA0032 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit, ev=1e-100, 90% identity	NADH:ubiquinone oxidoreductase, Na(+)- translocating, E subunit	Na(+)-translocating NADH-ubiquinone reductase subunit E	Na+-translocating NADH:quinone oxidoreductase subunit Nqr5	NADH:ubiquinone oxidoreductase, subunit E	Na-translocating NADH-quinone reductase subunit E	Na(+)-translocating NADH-quinone reductase, subunit E	NADH:ubiquinone oxidoreductase, subunit E TIGRFAM: NADH:ubiquinone oxidoreductase, subunit E PFAM: RnfA-Nqr electron transport subunit KEGG: hch:HCH_02689 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit	Na+-translocating NADH-quinone reductase subunit E	
CHLTR00286	Glycine cleavage system H protein	Glycine cleavage system H protein	Glycine cleavage system H protein	Similar to glycine cleavage system H protein hypothetical protein	conserved gene glycine cleavage system H protein	Similar to glycine cleavage system H protein hypothetical protein	identified by match to protein family HMM PF01597; match to protein family HMM TIGR00527 glycine cleavage system H protein	glycine decarboxylase complex H-protein	Glycine cleavage system H protein	Glycine cleavage system H protein	Glycine cleavage system H protein	Glycine cleavage system H protein	Glycine cleavage system H protein	InterProMatches:IPR002930; Cellular Component: glycine cleavage complex (GO:0005960), Biological Process: glycine catabolism (GO:0006546) glycine cleavage system protein H	lipoate-binding protein glycine cleavage system H protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark glycine cleavage H protein	Glycine cleavage system H protein	IPR002930: Glycine cleavage H-protein; IPR003016: 2-oxo acid dehydrogenase, lipoyl-binding site glycine cleavage complex protein H, carrier of aminomethyl moiety via covalently bound lipoyl cofactor	similar to Salmonella typhi CT18 glycine cleavage system H protein glycine cleavage system H protein	Similar to many including: Aquifex aeolicus probable glycine cleavage system H protein 4 GcvH4 or aq_1108 SWALL:GCS4_AQUAE (SWALL:O67192) (171 aa) fasta scores: E(): 9e-11, 31.48% id in 108 aa and to Thermoanaerobacter tengcongensis probable glycine cleavage system H protein 2 GcvH2 or tte0295 SWALL:Q8RCW0 (EMBL:AE013002) (126 aa) fasta scores: E(): 2.4e-10, 37.61% id in 109 aa putative glycine cleavage system H protein	similar to BRA0726, glycine cleavage system H protein GcvH, glycine cleavage system H protein	Glycine cleavage system H protein	Glycine cleavage system H protein	glycine cleavage system protein H homologue	Glycine cleavage system H protein	Putative glycine cleavage system component H	Ortholog of S. aureus MRSA252 (BX571856) SAR0864 glycine cleavage system H protein	glycine cleavage system protein H homologue	putative Glycine cleavage H-protein	
CHLTR00287	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00288	Phospholipase D superfamily	phospholipase D proteinase	phospholipase D	Probable cardiolipin synthetase	Cardiolipin synthetase	Cardiolipin synthetase	Phospholipase D precursor	Cardiolipin synthetase	Cardiolipin synthetase	Phospholipase D precursor	Phospholipase D	Cardiolipin synthetase	Phospholipase D family protein	
CHLTR00289	Lipoate Protein Ligase	Similar to Chlamydia pneumoniae lipoate protein ligase-like protein lpla_1 or cpn0436 or cp0317 SWALL:Q9Z8A7 (EMBL:AE001626) (239 aa) fasta scores: E(): 5.3e-58, 62.82% id in 234 aa and to Bacillus halodurans lipoate protein ligase bh2812 SWALL:Q9K938 (EMBL:AP001516) (276 aa) fasta scores: E(): 4.9e-10, 29.06% id in 203 aa.  Contains a iotin/lipoate A/B protein ligase family motif conserved hypothetical protein	lipoate-protein ligase A	hypothetical protein, similar to lipoate protein ligase	similar to gi|57286113|gb|AAW38207.1| [Staphylococcus aureus subsp. aureus COL], percent identity 83 in 276 aa, BLASTP E(): e-134 putative lipoate protein ligase	identified by match to protein family HMM PF03099 biotin/lipoate A/B protein ligase family protein	lipoate protein ligase A	lipoate-protein ligase A	putative biotin/lipoate-protein ligase	Lipoate protein ligase	lipoate-protein ligase A	Lipoate protein ligase	Biotin/lipoate A/B protein ligase	Biotin/lipoate A/B protein ligase family protein	YqhM	Biotin/lipoate A/B protein ligase	Biotin/lipoate A/B protein ligase	Biotin/lipoate A/B protein ligase	Lipoate protein ligase A	Hypothetical yqhM protein	Lipoate-protein ligase A	Lipoate-protein ligase A	biotin/lipoate A/B protein ligase PFAM: biotin/lipoate A/B protein ligase KEGG: plt:Plut_1329 lipoate-protein ligase A-like	Biotin/lipoate A/B protein ligase	Putative lipoate-protein ligase A	Putative lipoate-protein ligase A	Putative uncharacterized protein	Putative lipoate-protein ligase A	Biotin/lipoate A/B protein ligase	
CHLTR00291	tRNA-specific 2-thiouridylase mnmA	tRNA-specific 2-thiouridylase mnmA	tRNA-specific 2-thiouridylase mnmA	tRNA-specific 2-thiouridylase mnmA	tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase	tRNA-specific 2-thiouridylase mnmA	tRNA-specific 2-thiouridylase mnmA	Similar to tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase hypothetical protein	conserved gene tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase	Similar to tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase hypothetical protein	tRNA-specific 2-thiouridylase mnmA	identified by match to protein family HMM PF03054; match to protein family HMM TIGR00420 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	tRNA-specific 2-thiouridylase mnmA	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	identified by match to protein family HMM PF03054; match to protein family HMM TIGR00420 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	tRNA-specific 2-thiouridylase mnmA	tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase	tRNA-specific 2-thiouridylase mnmA	Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	TRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase	tRNA-specific 2-thiouridylase mnmA	tRNA-specific 2-thiouridylase mnmA	tRNA 5-methylaminomethyl-2-thiouridylate- methyltransferase protein	tRNA-specific 2-thiouridylase mnmA	Mb3050c, trmU, len: 367 aa. Equivalent to Rv3024c, len: 367 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 367 aa overlap). Probable trmU, tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61), equivalent to O33099|TRMU_MYCLE|ML1707|MLCB637.07 PROBABLE tRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE from Mycobacterium leprae (358 aa), FASTA scores: opt: 2033, E(): 5.5e-116, (85.45% identity in 357 aa overlap).  Also highly similar to others e.g.  O86583|TRMU_STRCO|SC2A11.22 from Streptomyces coelicolor (376 aa), FASTA scores: opt: 1336, E(): 1e-73, (56.9% identity in 369 aa overlap); BAB49856|MLR2824 from Rhizobium loti (378 aa), FASTA scores: opt: 826, E(): 8.3e-43, (42.35% identity in 359 aa overlap); Q9ZDM1|TRMU_RICPR|RP306 from Rickettsia prowazekii (358 aa), FASTA scores: opt: 800, E(): 3e-41, (40.1% identity in 359 aa overlap); etc. BELONGS TO THE TRMU FAMILY. PROBABLE tRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE TRMU	InterProMatches:IPR004506; Molecular Function: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity (GO:0004808), Cellular Component: cytoplasm (GO:0005737), Biological Process: tRNA processing (GO:0008033) tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	tRNA-specific 2-thiouridylase mnmA	
CHLTR00290	Probable ATP-dependent Clp protease ATP-binding subunit	identified by similarity to EGAD:18028; match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861 ATP-dependent Clp protease, ATP-binding subunit ClpC	ATP-dependent Clp protease regulatory subunit ClpC	Endopeptidase	ATPase with chaperone activity ATP-binding subunit	ClpC	Probable ATP-dependent Clp protease ATP-binding subunit	Mb3627c, clpC, len: 848 aa. Equivalent to Rv3596c, len: 848 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 848 aa overlap). Probable clpC, ATP-dependent clp protease ATP-binding subunit (EC 3.4.-.-), equivalent to P24428|CLPC_MYCLE PROBABLE ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT from Mycobacterium leprae (848 aa), FASTA scores: opt: 5286, E(): 0, (97.15% identity in 845 aa overlap). Also highly similar to members of the clpA/clpB family e.g.  Q9S6T8|SCE94.24c from Streptomyces coelicolor (841 aa) FASTA scores: opt: 4399, E(): 0, (81.0% identity in 848 aa overlap); Q9KGG2|CLPC|BH0103 from Bacillus halodurans (813 aa), FASTA scores: opt: 3279, E(): 3.8e-173, (61.9% identity in 808 aa overlap); Q55662|CLPC|SLL0020 from Synechocystis sp. strain PCC 6803 (821 aa), FASTA scores: opt: 3201, E(): 7.6e-169, (60.5% identity in 820 aa overlap); P51332|CLPC_PORPU from Porphyra purpurea (821 aa), FASTA scores: opt: 3045, E(): 3e-160, (57.65% identity in 817 aa overlap); P37571|CLPC_BACSU|MECB from Bacillus subtilis (810 aa), FASTA scores: opt: 2969, E(): 4.6e-156, (61.15% identity in 811 aa overlap); etc.  Contains PS00017 ATP/GTP-binding site motif A (P-loop).  BELONGS TO THE CLPA/CLPB FAMILY, CLPC SUBFAMILY. PROBABLE ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPC	ATP-dependent Clp protease ATP-binding subunit ClpC	Similar to Bacillus subtilis negative regulator of genetic competence ClpC/MecB SWALL:CLPC_BACSU (SWALL:P37571) (810 aa) fasta scores: E(): 2.7e-125, 51.97% id in 810 aa and to Chlamydia pneumoniae probable ATP-dependent clp protease ATP-binding subunit clpc or cpn0437 or cp0316 SWALL:CLPC_CHLPN (SWALL:Q9Z8A6) (845 aa) fasta scores: E(): 0, 92.43% id in 846 aa negative regulator of genetic competence clpc/mecb	ATP-dependent Clp protease, subunit C	regulatory subunit of ATP-dependent Clp protease ClpC	identified by similarity to GP:1314297; match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861 ClpC ATPase	Similar to: HI0859, CLPB_HAEIN ClpB	Similar to Bacillus subtilis negative regulator of genetic competence ClpC/MecB ClpC or MecB SWALL:CLPC_BACSU (SWALL:P37571) (810 aa) fasta scores: E(): 5.8e-119, 48.21% id in 842 aa, and to Bacteroides thetaiotaomicron ATP-dependent Clp protease BT0898 SWALL:AAO76005 (EMBL:AE016929) (841 aa) fasta scores: E(): 0, 90.33% id in 838 aaand identical in its C-terminal region to Bacteroides fragilis ClpB protease SWALL:Q93CN5 (EMBL:AF404759) (442 aa) fasta scores: E(): 3.1e-139, 100% id in 442 aa negative regulator of genetic competence	Similar to FASTA: AAO89660 (Q83F55) ClpB protein from Coxiella burnetii (859 aa). FASTA: opt: 3593 Z-score: 3223.6 E(): 1.1e-171 Smith-Waterman score: 3593; 65.357 identity in 840 aa overlap ClpB protein	ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones	Similar to Bacillus subtilis negative regulator of genetic competence ClpC/MecB SWALL:CLPC_BACSU (SWALL:P37571) (810 aa) fasta scores: E(): 3e-152, 56.66% id in 810 aa, and to Streptomyces coelicolor putative Vlp-family ATP-binding protease SCO3373 or SCE94.24c SWALL:Q9S6T8 (EMBL:AL049628) (841 aa) fasta scores: E(): 7.6e-189, 65.87% id in 838 aa putative Clp-family ATP-binding protease/regulator	ClpB protein	ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones	negative regulator of genetic competence clpC/mecB (ATP-dependent Clp protease)	ATP-dependent Clp protease	endopeptidas Clp ATP-binding chain C	identified by similarity to SP:P37571; match to protein family HMM PF00004; match to protein family HMM PF02861 ATP-dependent Clp protease, ATP-binding subunit ClpC	ATPase	ATPase	ATP-dependent Clp protease, ATP-binding subunit	identified by similarity to GP:5231279; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 ATP-dependent Clp protease, ATP-binding subunit ClpB	similar to gi|27467205|ref|NP_763842.1| [Staphylococcus epidermidis ATCC 12228], percent identity 93 in 820 aa, BLASTP E(): 0.0 putative stress response-related Clp ATPase	
CHLTR00292	Uncharacterized protein CT_288	conserved hypothetical protein	hypothetical protein	Candidate inclusion membrane protein precursor	Candidate inclusion membrane protein precursor	Candidate inclusion membrane protein	
CHLTR00293	Putative uncharacterized protein	Putative membrane protein	Putative membrane protein	
CHLTR00294	PTS IIA Protein + HTH DNA-Binding Domain	putative PTS IIA-like nitrogen-regulatory protein PtsN	putative PTS IIA-like nitrogen-regulatory protein PtsN	phosphotransferase system mannitol/fructose-specific Pts IIA	Putative PTS IIA-like nitrogen-regulatory protein PtsN	PTS IIA-like nitrogen-regulatory protein PtsN identified by match to protein family HMM PF00359; match to protein family HMM TIGR01419	putative PTS IIA-like nitrogen-regulatory protein PtsN PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KEGG: bur:Bcep18194_A6123 putative PTS IIA-like nitrogen-regulatory protein PtsN	putative PTS IIA-like nitrogen-regulatory protein PtsN PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KEGG: bcn:Bcen_2179 putative PTS IIA-like nitrogen-regulatory protein PtsN	putative PTS IIA-like nitrogen-regulatory protein PtsN TIGRFAM: DNA binding domain, excisionase family PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KEGG: gme:Gmet_2604 putative PTS IIA-like nitrogen-regulatory protein PtsN	PTS IIA-like nitrogen-regulatory protein PtsN identified by match to protein family HMM PF00359; match to protein family HMM TIGR01419	nitrogen regulatory IIA protein	putative PTS IIA-like nitrogen-regulatory protein PtsN	PTS IIA-like nitrogen-regulatory protein PtsN	putative PTS IIA-like nitrogen-regulatory protein PtsN PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KEGG: pol:Bpro_4612 PTS IIA-like nitrogen-regulatory protein PtsN	Putative PTS IIA-like nitrogen-regulatory protein PtsN	PTS system, nitrogen regulatory IIA protein	Putative PTS IIA-like nitrogen-regulatory protein PtsN	PTS IIA-like nitrogen-regulatory protein PtsN	Putative PTS IIA-like nitrogen-regulatory protein PtsN	Putative PTS IIA-like nitrogen-regulatory protein PtsN	Putative PTS IIA-like nitrogen-regulatory protein PtsN	PTS system, nitrogen regulatory IIA protein	PTS system, nitrogen regulatory IIA protein	PTS-family membrane transport protein IIA component	PTS-family membrane transport protein IIA component	Putative PTS IIA-like nitrogen-regulatory protein PtsN	Putative PTS IIA-like nitrogen-regulatory protein PtsN	PTS IIA-like nitrogen-regulatory protein PtsN	Putative PTS IIA-like nitrogen-regulatory protein PtsN	
CHLTR00295	PTS IIA Protein	Phosphotransferase system mannitol/fructose- specific IIA domain	Putative nitrogen regulatory IIa (Enzyme IIa-ntr) (Phosphotransferase enzyme II, a component) transcription regulator protein	Nitrogen regulatory IIA protein	PTS, EIIA	identified by match to protein family HMM PF00359; match to protein family HMM TIGR01419 PTS IIA-like nitrogen-regulatory protein PtsN	Probable PTS system, fructose-specific IIABC componen	truncated PTS fructose-specific enzyme IIABC components, truncated	PTS IIA-like nitrogen-regulatory protein PtsN	InterProMatches:IPR004715; Molecular Function: protein-N(PI)-phosphohistidine-sugar phosphotransferase activity (GO:0008982), Biological Process: phosphoenolpyruvate-dependent sugar phosphotransferase system (GO:0009401), Cellular Component: integral to membrane (GO:0016021) phosphotransferase system (PTS) fructose-specific enzyme IIABC component	IPR002178: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; IPR006320: PTS IIA-like nitrogen-regulatory protein PtsN sugar specific PTS family, enzyme IIA, also regulates N metabolism	similar to Salmonella typhi CT18 nitrogen regulatory IIA protein nitrogen regulatory IIA protein	Similar to many phosphotransferase system proteins including: Chlamydia muridarum PTS system, IIa component tc0564 SWALL:Q9PKA3 (EMBL:AE002324) (165 aa) fasta scores: E(): 2.2e-35, 61.93% id in 155 aa, and to Thermoanaerobacter tengcongensis phosphotransferase system mannitol/fructose-specific iia domain ptsn3 or tte2586 SWALL:Q8R738 (EMBL:AE013199) (151 aa) fasta scores: E(): 5.5e-11, 33.33% id in 141 aa PTS system, IIa component	similar to BR0161, PTS system, nitrogen regulatory IIA component PtsN, PTS system, nitrogen regulatory IIA component	Nitrogen regulatory IIA protein	Putative regulatory protein	COG1762 PTS system mannose/fructose-specific component IIA	nitrogen regulatory IIA protein	Phosphotransferase system, nitrogen regulatory IIA protein	Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)	Sugar specific PTS family enzyme IIA	Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)	identified by match to protein family HMM PF00359; match to protein family HMM TIGR01419 PTS IIA-like nitrogen-regulatory protein PtsN	identified by similarity to SP:P31222; match to protein family HMM PF00359; match to protein family HMM TIGR01419 PTS IIA-like nitrogen-regulatory protein PtsN	PTS IIA-like nitrogen-regulatory protein PtsN	PTS IIA-like nitrogen-regulatory protein PtsN	PTS IIA-like nitrogen-regulatory protein PtsN	Best Blastp Hit: pir||B81941 probable regulatory protein NMA0946 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379650|emb|CAB84217.1| (AL162754) putative regulatory protein [Neisseria meningitidis] COG1762 Phosphotransferase system putative two-component system transcriptional response regulator	identified by match to protein family HMM PF00359; match to protein family HMM TIGR00848 PTS system, fructose-specific, IIA component	
CHLTR00296	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase)	conserved gene deoxyuridinetriphosphatase	Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase)	identified by match to protein family HMM PF00692; match to protein family HMM TIGR00576 deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'triphosphate nucleotidohydrolase protein	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Mb2716c, dut, len: 154 aa. Equivalent to Rv2697c, len: 154 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 154 aa overlap). Probable dut, deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23), equivalent to Q49992|DUT_MYCLE|ML1028 DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE from Mycobacterium leprae (154 aa), FASTA scores: opt: 928, E(): 2.1e-51, (90.25% identity in 154 aa overlap). Also highly similar to others e.g. O54134|DUT_STRCO|SC2E9.09 from Streptomyces coelicolor (183 aa), FASTA scores: opt: 534, E(): 1.2e-26, (56.1% identity in 148 aa overlap); O66592|DUT_AQUAE|AQ_220 from Aquifex aeolicus (150 aa), FASTA scores: opt: 398, E(): 3.3e-18, (48.05% identity in 152 aa overlap); Q9X3X5|DUT_ZYMMO from Zymomonas mobilis (146 aa), FASTA scores: opt: 396, E(): 4.4e-18, (49.0% identity in 147 aa overlap); etc. BELONGS TO THE DUTPASE FAMILY. PUTATIVE DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE DUT (DUTPASE) (DUTP PYROPHOSPHATASE) (DEOXYURIDINE 5'-TRIPHOSPHATASE) (DUTP DIPHOSPHATASE) (DEOXYURIDINE-TRIPHOSPHATASE)	phage-related protein deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark dUTPase	deoxyuridinetriphosphatase	dUTPase	similar to Salmonella typhi CT18 deoxyuridine 5'-triphosphate nucleotidohydrolase deoxyuridine 5'-triphosphate nucleotidohydrolase	Similar to Rhizobium meliloti deoxyuridine 5'-triphosphate nucleotidohydrolase Dut or DnaS or r00345 or smc00461 SWALL:DUT_RHIME (SWALL:Q92SM6) (160 aa) fasta scores: E(): 1.4e-24, 54.28% id in 140 aa, Chlamydophila caviae deoxyuridine 5`-triphosphate nucleotidohydrolase Dut or cca00347 SWALL:Q823Q9 (EMBL:AE016995) (147 aa) fasta scores: E(): 1.1e-49, 93.19% id in 147 aa and Brucella melitensis, and Brucella suis deoxyuridine 5'-triphosphate nucleotidohydrolase dut or bmei0358 or br1675 SWALL:DUT_BRUME (SWALL:Q8YIT4) (157 aa) fasta scores: E(): 6.5e-25, 54.22% id in 142 aa deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	similar to BR1675, deoxyuridine 5-triphosphate nucleotidohydrolase Dut, deoxyuridine 5-triphosphate nucleotidohydrolase	Putative uncharacterized protein gbs0108	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	identified by match to PFAM protein family HMM PF00692 deoxyuridine 5`-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	
CHLTR00297	AcCoA Carboxylase/Transferase Beta	Acetyl-CoA carboxylase carboxyl transferase beta subunit	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Probable acetyl-coenzyme a carboxylase carboxyl transferase (Subunit beta) protein	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Similar to acetyl-CoA carboxylase beta subunit hypothetical protein	conserved gene acetyl CoA carboxylase, carboxyltransferase, beta subunit	Similar to acetyl-CoA carboxylase beta subunit hypothetical protein	identified by match to protein family HMM TIGR00515 acetyl-CoA carboxylase, carboxyl transferase, beta subunit	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	acetyl-CoA carboxylase beta subunit	identified by similarity to SP:P08193; match to protein family HMM TIGR00515 acetyl-CoA carboxylase, carboxyl transferase, beta subunit	Acetyl-CoA carboxylase	acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Acetyl-CoA carboxylase transferase beta subunit	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	identified by match to protein family HMM TIGR00515 acetyl-CoA carboxylase, carboxyl transferase, beta subunit	Acetyl-CoA carboxylase, carboxyl transferase, beta subunit	InterProMatches:IPR000438; Molecular Function: acetyl-CoA carboxylase activity (GO:0003989), Biological Process: fatty acid biosynthesis (GO:0006633), Cellular Component: acetyl-CoA carboxylase complex (GO:0009317) acetyl-CoA carboxylase (beta subunit)	acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark acetyl-coenzyme A carboxylase carboxyl transferase	Acetyl-CoA carboxylase carboxyl transferase, beta subunit	Acetyl-CoA carboxylase carboxyl transferase subunit betta	IPR000438: Acetyl-CoA carboxylase carboxyl transferase, beta subunit acetylCoA carboxylase, beta subunit	similar to Salmonella typhi CT18 acetyl-CoA carboxylase beta subunit acetyl-CoA carboxylase beta subunit	Similar to Prokaryotic and Eukaryotic proteins that are involved in Fatty-acid biosynthesis: Porphyra purpurea acetyl-coenzyme A carboxylase carboxyl transferase subunit beta AccD SWALL:ACCD_PORPU (SWALL:P51198) (288 aa) fasta scores: E(): 1.2e-47, 52.73% id in 256 aa, and to Chlamydia pneumoniae accoa carboxylase/transferase beta AccD or cpn0058 or cp0717 SWALL:Q9Z9C3 (EMBL:AE001591) (308 aa) fasta scores: E(): 2.4e-107, 89.28% id in 308 aa acetyl-coenzyme a carboxylase carboxyl transferase subunit beta	
CHLTR00298	Superoxide dismutase	Superoxide dismutase [Mn/Fe] 1	Superoxide dismutase	Superoxide dismutase	identified by similarity to SP:P54375; match to protein family HMM PF00081; match to protein family HMM PF02777 superoxide dismutase	Superoxide dismutase	superoxide dismutase (Mn)	Superoxide dismutase	InterProMatches:IPR001189; Molecular Function: superoxide dismutase activity (GO:0004784), Biological Process: superoxide metabolism (GO:0006801), Molecular Function: metal ion binding (GO:0046872) superoxide dismutase	Superoxide dismutase	Superoxide dismutase	Superoxide dismutase	IPR001189: Manganese and iron superoxide dismutase superoxide dismutase, manganese	similar to Salmonella typhi CT18 manganese superoxide dismutase manganese superoxide dismutase	Similar to many Prokaryotic and Eukaryotic dismutases including: Chlamydia pneumoniae superoxide dismutase [mn] SodA or cpn0057 or cp0718 SWALL:SODM_CHLPN (SWALL:Q9Z9C4) (207 aa) fasta scores: E(): 2.7e-67, 78.81% id in 203 aa and to Drosophila melanogaster superoxide dismutase [mn], mitochondrial precursor sod2 or cg8905 SWALL:SODM_DROME (SWALL:Q00637) (217 aa) fasta scores: E(): 7e-43, 55% id in 200 aa superoxide dismutase	Superoxide dismutase	Superoxide dismutase	superoxide dismutase SodA	identified by match to PFAM protein family HMM PF00081 superoxide dismutase, Fe-Mn	Superoxide dismutase	Ortholog of S. aureus MRSA252 (BX571856) SAR1630 superoxide dismutase	Superoxide dismutase	superoxide dismutase SodA	Superoxide dismutase	best blastp match sp|P77957|SODM_STRPY SUPEROXIDE DISMUTASE [MN] superoxide dismutase	Manganese co-factored superoxide dismutase	Similar to: HI1088, SODM_HAEIN [Mn] superoxide dismutase	Superoxide dismutase SodA protein	
CHLTR00299	Phosphomannomutase	Phosphoglucomutase	CpsG	Phosphoglucomutase	identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 phosphoglucomutase/phosphomannomutase family protein	Phosphomannomutase	phosphoglucomutase	Phosphomannomutase	Phosphoglucomutase or phosphomannomutase	PmmB	PROBABLE PHOSPHOMANNOMUTASE PMMB	Mb3336, pmmB, len: 534 aa. Equivalent to Rv3308, len: 534 aa, from Mycobacterium tuberculosis strain H37Rv, (99.8% identity in 534 aa overlap). Probable pmmB, phosphomannomutase (EC 5.4.2.8), equivalent to Q9CCL7|PMMB|ML0706 PUTATIVE PHOSPHO-SUGAR MUTASE from Mycobacterium leprae (538 aa), FASTA scores: opt: 2681, E(): 1.4e-150, (76.95% identity in 538 aa overlap). Also similar to others e.g. Q9AD82|SCK13.08c from Streptomyces coelicolor (549 aa), FASTA scores: opt: 1378, E(): 8.9e-74, (46.7% identity in 529 aa overlap); Q9ZHL4|PMM (FRAGMENT so no homology at N-terminus for this one) from Haemophilus ducreyi (443 aa), FASTA scores: opt: 935, E(): 9.6e-48, (39.4% identity in 449 aa overlap); P18159|YHXB_BACSU from Bacillus subtilis (565 aa), FASTA scores: opt: 776, E(): 2.7e-38, (31.7% identity in 574 aa overlap); etc. Contains PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. BELONGS TO THE PHOSPHOHEXOSE MUTASES FAMILY. PROBABLE PHOSPHOMANNOMUTASE PMMB (PHOSPHOMANNOSE MUTASE)	Biological Process: carbohydrate metabolism (GO:0005975), Molecular Function: intramolecular transferase activity, phosphotransferases (GO:0016868) Phosphoglucomutase	phosphomannomutase	COG1109 Phosphomannomutase phosphoglucomutase	Similar to Mycoplasma pirum phosphomannomutase ManB SWALL:MANB_MYCPI (SWALL:P47723) (544 aa) fasta scores: E(): 1e-39, 31.31% id in 546 aa and to Chlamydia pneumoniae phosphomannomutase MrsA or cpn0056 SWALL:Q9Z9C5 (EMBL:AE001591) (598 aa) fasta scores: E(): 2.7e-148, 64.2% id in 595 aa, and to Streptococcus thermophilus phosphoglucomutase PgmA SWALL:Q9K560 (EMBL:AJ243290) (572 aa) fasta scores: E(): 2e-60, 37.2% id in 559 aa putative phosphomannomutase	Putative uncharacterized protein gbs1100	hypothetical protein, similar to phosphomannomutase	identified by match to PFAM protein family HMM PF00408 phosphoglucomutase	Ortholog of S. aureus MRSA252 (BX571856) SAR2576 putative phosphomannomutase	Phosphomannomutase	hypothetical protein, similar to phosphomannomutase	Phosphoglucomutase	phosphomannomutase phosphoglucomutase	Similar to: HI0740, Y740_HAEIN phosphoglucomutase	Similar to Streptococcus thermophilus phosphoglucomutase PgmA SWALL:Q9K560 (EMBL:AJ243290) (572 aa) fasta scores: E(): 1.3e-80, 41.91% id in 575 aa, and to Bacteroides thetaiotaomicron phosphoglucomutase phosphomannomutase BT1548 SWALL:AAO76655 (EMBL:AE016932) (581 aa) fasta scores: E(): 3.3e-217, 92.42% id in 581 aa, and to Clostridium perfringens probable phosphomannomutase ManB or CPE1873 SWALL:Q8XJ88 (EMBL:AP003192) (575 aa) fasta scores: E(): 1.1e-94, 47.28% id in 552 aa putative phosphoglucomutase	Phosphomannomutase CpsG protein	phosphoglucomutase	
CHLTR00300	Putative uncharacterized protein	conserved hypothetical protein	divalent cation-dependent regulator A	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00301	Ribonuclease 3	Ribonuclease 3	Ribonuclease 3	Ribonuclease 3	Ribonuclease 3	Ribonuclease 3	Similar to ribonuclease III hypothetical protein	conserved gene ribonuclease III	Similar to ribonuclease III hypothetical protein	Ribonuclease 3	identified by similarity to EGAD:37838; match to protein family HMM PF00035; match to protein family HMM PF00636 ribonuclease III	Ribonuclease 3	Ribonuclease III	ribonuclease III	identified by similarity to SP:P05797; match to protein family HMM PF00035; match to protein family HMM PF00636 ribonuclease III	Ribonuclease 3	ribonuclease III	Ribonuclease 3	Ribonuclease III	Ribonuclease 3	DsRNA-specific ribonuclease/ribonuclease III	identified by similarity to SP:P51833; match to protein family HMM PF00035; match to protein family HMM PF00636 ribonuclease III	Ribonuclease 3	Ribonuclease III	Ribonuclease 3	Mb2950c, rnc, len: 240 aa. Equivalent to Rv2925c, len: 240 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 240 aa overlap). Probable rnc, ribonuclease III (RNase III) (EC 3.1.26.3), equivalent to O69469|RNC_MYCLE RIBONUCLEASE III from Mycobacterium leprae (238 aa). Also highly similar to other ribonucleases III e.g. Q9ZBQ7|RNC_STRCO from Streptomyces coelicolor (272 aa), FASTA scores: opt: 889, E(): 5.4e-51, (62.2% identity in 225 aa overlap) (N-terminus longer 21 aa); P51833|RNC_BACSU from Bacillus subtilis (249 aa), FASTA scores: opt: 493, E(): 5e-25, (43.25% identity in 215 aa overlap); P05797|RNC_ECOLI|RNC|B2567|Z3848|ECS3433 from Escherichia coli strain O157:H7 and K12 (226 aa), FASTA scores: opt: 459, E(): 7.9e-23, (41.8% identity in 213 aa overlap); etc. Contains PS00517 Ribonuclease III family signature. PROBABLE RIBONUCLEASE III RNC (RNASE III)	InterProMatches:IPR000999; cleaves both 5'- and 3'-sites of the small cytoplasmic RNA precursor,Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease III activity (GO:0004525), Biological Process: RNA processing (GO:0006396) ribonuclease III	ribonuclease III	Ribonuclease 3	
CHLTR00302	DNA repair protein radA homolog	DNA repair protein radA	DNA repair protein radA	DNA repair protein radA	DNA repair protein radA	Similar to DNA repair protein RadA hypothetical protein	conserved gene DNA repair protein RadA	Similar to DNA repair protein RadA hypothetical protein	DNA repair protein radA	identified by similarity to EGAD:13219; match to protein family HMM PF03796; match to protein family HMM TIGR00416 DNA repair protein RadA	DNA repair protein RadA	DNA repair protein RadA	identified by match to protein family HMM TIGR00416 DNA repair protein RadA	DNA repair protein radA	DNA repair protein	DNA repair protein radA	RadA protein	DNA repair protein radA	identified by similarity to SP:P37572; match to protein family HMM PF03796; match to protein family HMM TIGR00416 DNA repair protein RadA	DNA repair protein radA	DNA repair protein radA	DNA repair protein radA homolog	Mb3616, radA, len: 480 aa. Equivalent to Rv3585, len: 480 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 480 aa overlap). Probable radA, DNA repair protein, similar to many e.g. Q9X8L5|SCE94.02 from Streptomyces coelicolor (469 aa), FASTA scores: opt: 1607, E(): 3.1e-84, (56.15% identity in 454 aa overlap); Q9JV51|RADA|NMA0992 from Neisseria meningitidis (serogroup A) (459 aa), FASTA scores: opt: 1275, E(): 2.5e-65, (45.0% identity in 458 aa overlap); and Q9K040|RADA|NMB0782 from Neisseria meningitidis (serogroup B) (459 aa), FASTA scores: opt: 1269, E(): 5.4e-65, (44.5% identity in 456 aa overlap); P37572|RADA_BACSU|SMS from Bacillus subtilis (458 aa), FASTA scores: opt: 1204, E(): 2.7e-61, (39.55% identity in 455 aa overlap); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE RADA FAMILY. DNA REPAIR PROTEIN RADA (DNA REPAIR PROTEIN SMS)	InterProMatches:IPR004504; Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281) DNA repair protein RadA	DNA repair protein RadA	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark DNA repair protein	RadA DNA repair protein	DNA repair protein RadA	DNA repair protein RadA	
CHLTR00303	Probable porphobilinogen deaminase	identified by match to protein family HMM PF01379; match to protein family HMM PF03900; match to protein family HMM TIGR00212 porphobilinogen deaminase	Porphobilinogen deaminase	Porphobilinogen deaminase	Similar in parts to several HemC orthologues including: Xylella fastidiosa porphobilinogen deaminase HemC or xf1627 SWALL:HEM3_XYLFA (SWALL:Q9PCX7) (305 aa) fasta scores: E(): 1.5e-16, 33.78% id in 222 aa and to Pyrobaculum aerophilum probable porphobilinogen deaminase HemC or pae0580 SWALL:Q8ZYW7 (EMBL:AE009774) (297 aa) fasta scores: E(): 9.4e-17, 33.33% id in 216 aa putative porphobilinogen deaminase	Similar to sp|Q9ZD77|HEM3_RICPR sp|O66621|HEM3_AQUAE sp|Q92BF8|HEM3_LISIN rc||hemC; Ortholog to ERGA_CDS_03750 Porphobilinogen deaminase	Similar to sp|Q9ZD77|HEM3_RICPR sp|O66621|HEM3_AQUAE sp|Q92BF8|HEM3_LISIN rc||hemC; Ortholog to ERWE_CDS_03800 Porphobilinogen deaminase	porphobilinogen deaminase	HemC putative porphobilinogen deaminase; pfam03900, cd00494	putative porphobilinogen deaminase similarity:fasta; with=UniProt:Q9AKR9_RHOCA (EMBL:RC16796); Rhodobacter capsulatus (Rhodopseudomonas capsulata).; hemC; Porphobilinogen deaminase (EC 4.3.1.8).; length=317; id 51.475; 305 aa overlap; query 5-305; subject 10-314 similarity:fasta; with=UniProt:HEM3_AGRT5 (EMBL:AE008178); Agrobacterium tumefaciens (strain C58/ATCC 33970).; hemC; Porphobilinogen deaminase (EC 2.5.1.61) (PBG) (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase).; length=309; id 75.974; 308 aa overlap; query 1-308; subject 1-308	porphobilinogen deaminase EC 4.3.1.8	porphobilinogen deaminase protein similar to hemC (SMc03231) [Sinorhizobium meliloti] Similar to entrez-protein:Q92LH7 Putative location:bacterial cytoplasm Psort-Score: 0.1222; go_function: transferase activity [goid 0016740]; go_function: hydroxymethylbilane synthase activity [goid 0004418]; go_process: chlorophyll biosynthesis [goid 0015995]; go_process: porphyrin biosynthesis [goid 0006779]	porphobilinogen deaminase TIGRFAM: porphobilinogen deaminase PFAM: Porphobilinogen deaminase KEGG: mta:Moth_1249 porphobilinogen deaminase	porphobilinogen deaminase identified by similarity to SP:P16616; match to protein family HMM PF01379; match to protein family HMM PF03900; match to protein family HMM TIGR00212	Porphobilinogen deaminase	porphobilinogen deaminase	porphobilinogen deaminase	porphobilinogen deaminase	transcript_id=ENSTBET00000010846	porphobilinogen deaminase	porphobilinogen deaminase	porphobilinogen deaminase KEGG: mmc:Mmcs_0677 porphobilinogen deaminase TIGRFAM: porphobilinogen deaminase PFAM: Porphobilinogen deaminase	Porphobilinogen deaminase	Hypothetical protein	Porphobilinogen deaminase	porphobilinogen deaminase KEGG: mmc:Mmcs_0677 porphobilinogen deaminase TIGRFAM: porphobilinogen deaminase PFAM: Porphobilinogen deaminase	Porphobilinogen deaminase	Porphobilinogen deaminase	Porphobilinogen deaminase	
CHLTR00304	Putative uncharacterized protein	pseudo	pseudo	
CHLTR00305	Serine/threonine-protein kinase pknD	serine/threonine-protein kinase EC 2.7.1.-	PknB putative serine/threonine-protein kinase	Serine/threonine-protein kinase	Serine/threonine-protein kinase	Serine/threonine-protein kinase	
CHLTR00306	Valyl-tRNA synthetase	Valyl-tRNA synthetase	valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	valyl-tRNA synthetase	conserved gene valyl tRNA synthase	valyl-tRNA synthetase	Valyl-tRNA synthetase	identified by match to protein family HMM PF00133; match to protein family HMM TIGR00422 valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	valyl-tRNA synthetase	identified by similarity to GB:AAR38353.1; match to protein family HMM PF00133; match to protein family HMM TIGR00422 valyl-tRNA synthetase	Valyl-tRNA synthetase	valyl-tRNA synthetase	Valyl-tRNA synthetase	Valine-tRNA ligase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	identified by similarity to SP:Q05873; match to protein family HMM PF00133; match to protein family HMM TIGR00422 valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase	Mb2475c, valS, len: 876 aa. Equivalent to Rv2448c, len: 876 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 876 aa overlap). Probable valS, valyl-tRNA synthetases (EC 6.1.1.9), equivalent to Q9CBY7|VALS|ML1472 VALYL-TRNA SYNTHASE from Mycobacterium leprae (886 aa), FASTA scores: opt: 5181,E(): 0, (85.4% identity in 876 aa overlap). Also highly similar to others e.g. O06851|SYV_STRCO from Streptomyces coelicolor (874 aa), FASTA scores: opt: 2470, E(): 1.6e-143, (60.45% identity in 880 aa overlap); Q9X2D7|SYV_THEMA|VALS|TM1817 from Thermotoga maritima (865 aa), FASTA scores: opt: 2418, E(): 2.4e-140, (44.2% identity in 891 aa overlap); Q05873|SYV_BACSU|VALS from Bacillus subtilis (880 aa), FASTA scores: opt: 2063, E(): 1.4e-118, (46.08% identity in 894 aa overlap); etc. Contains PS00178 Aminoacyl-transfer RNA synthetases class-I signature.  Contains probable coiled-coil from aa 810 to 846. BELONGS TO CLASS-I AMINOACYL-TRNA SYNTHETASE FAMILY. PROBABLE VALYL-tRNA SYNTHASE PROTEIN VALS (VALYL-tRNA SYNTHETASE) (VALINE--tRNA LIGASE) (VALINE TRANSLASE)	
CHLTR00307	Putative uncharacterized protein	hypothetical protein	hypothetical protein	Putative uncharacterized protein precursor	Putative uncharacterized protein precursor	Putative uncharacterized protein	
CHLTR00308	ATP Synthase Subunit K	V-type ATPase, subunit K, putative	Similar to Streptococcus pyogenes V-type Na+-ATPase subunit K SPYM18_0145 SWALL:Q8P2U9 (EMBL:AE009965) (159 aa) fasta scores: E(): 7.1e-12, 37.93% id in 145 aa, and to Enterococcus hirae V-type sodium ATP synthase subunit K NtpK or NtpN SWALL:NTPK_ENTHR (SWALL:P43457) (156 aa) fasta scores: E(): 7.4e-11, 36.8% id in 144 aa putative V(vacuolar)-type Na+-ATP synthase subunit K	AhaK A1A0 ATPase, subunit K	V-type ATP synthase subunit K EC 3.6.1.34	V-type ATPase, K subunit identified by match to protein family HMM PF00137	V-type ATPase, subunit K, putative	V-type ATPase, K subunit identified by match to protein family HMM PF00137	V-type sodium ATP synthase subunit K	V-type sodium ATP synthase subunit K	H+-transporting two-sector ATPase, C subunit precursor	H+-transporting two-sector ATPase, C subunit precursor	V-type ATP synthase subunit K	V-type ATPase, subunit K	Vacuolar-type H+-transporting ATP synthase, subunit K	V-type sodium ATP synthase subunit K	H+transporting two-sector ATPase C subunit precursor	V-type ATPase, K subunit	V-type H+-transporting ATPase subunit K	V-type ATPase, K subunit	V-type sodium ATP synthase subunit C precursor	V-type ATPase, K subunit	V-type ATPase, K subunit	V-type sodium ATP synthase subunit C precursor	V-type sodium ATP synthase subunit K	V-type sodium ATP synthase subunit K	V-type ATPase, K subunit	V-type ATPase, K subunit	Putative v-type ATPase subunit K	
CHLTR00309	V-type ATP synthase subunit I	Similar to Enterococcus hirae v-type sodium ATP synthase subunit I NtpI or NtpM SWALL:NTPI_ENTHR (SWALL:P43439) (664 aa) fasta scores: E(): 3.3e-06, 23.3% id in 618 aa, and to Chlamydophila caviae V-type sodium ATP synthase, subunit I AtpI or cca00681 SWALL:Q822K1 (EMBL:AE016996) (651 aa) fasta scores: E(): 0, 86.74% id in 649 aa, and to Treponema pallidum V-type ATP synthase subunit I 1 AtpI1 or tp0429 SWALL:VAI1_TREPA (SWALL:O83444) (622 aa) fasta scores: E(): 4.2e-10, 26.05% id in 403 aa putative V-type sodium ATP synthase subunit I	V-type ATPase, subunit I, putative	V-type Na+-ATPase subunit I	best blastp match gb|AAK33253.1| (AE006484) V-type Na+ -ATPase subunit I [Streptococcus pyogenes M1 GAS] V-type Na+ -ATPase subunit I	Similar to Clostridium tetani V-type sodium ATP synthase subunit I CTC00994 SWALL:AAO35581 (EMBL:AE015939) (656 aa) fasta scores: E(): 7.8e-34, 28.85% id in 662 aa, and to Enterococcus hirae V-type sodium ATP synthase subunit I NtpI or NtpM SWALL:NTPI_ENTHR (SWALL:P43439) (664 aa) fasta scores: E(): 1.6e-28, 26.61% id in 665 aa putative V(vacuolar)-type Na+ ATP synthase subunit I	V-type sodium ATP synthase subunit I	V-type sodium ATP synthase subunit I	V-type sodium ATP synthase subunit I	V-type ATP synthase subunit I EC 3.6.1.34	V-type sodium ATP synthase subunit I	V-type ATPase, subunit I, putative	V-type sodium ATP synthase subunit I identified by match to protein family HMM PF01496	V-type sodium ATP synthase subunit I	A(1)A(0)-type ATP synthase, subunit I	V-type sodium ATP synthase subunit I	V-type sodium ATPase, subunit I, putative	Periplasmic binding protein	V-type sodium ATP synthase subunit I	Putative V-type ATP synthase subunit I	V-type ATPase, 116 kDa subunit	V-type ATPase, subunit I	Vacuolar-type H+-transporting ATP synthase, subunit I	V-type sodium ATP synthase, chain I	V-type sodium ATP synthase subunit I	H(+)-transporting two-sector ATPase	V-type ATPase, I subunit	V-type ATPase, 116 kDa subunit	V-type H+-transporting ATPase subunit I	
CHLTR00310	V-type ATP synthase subunit D	Similar to Thermus thermophilus V-type ATP synthase subunit D AtpD or VatD SWALL:BAA33198 (EMBL:D63799) (223 aa) fasta scores: E(): 2.3e-05, 26.92% id in 208 aa, and to Chlamydophila caviae v-type ATPase, subunit D cca00682 SWALL:Q822K0 (EMBL:AE016996) (208 aa) fasta scores: E(): 2.4e-66, 92.3% id in 208 aa, and to Treponema pallidum V-type ATP synthase subunit D 1 AtpD1 or tp0428 SWALL:VAD1_TREPA (SWALL:O83443) (206 aa) fasta scores: E(): 1.7e-14, 32.99% id in 194 aa putative V-type ATP synthase subunit D	V-type ATPase, subunit D	Similar to Treponema pallidum V-type ATP synthase subunit D 1 AtpD1 or TP0428 SWALL:VAD1_TREPA (SWALL:O83443) (206 aa) fasta scores: E(): 4.8e-12, 30.76% id in 182 aa, and to Borrelia burgdorferi V-type ATP synthase subunit D AtpD or BB0092 SWALL:VATD_BORBU (SWALL:O51119) (204 aa) fasta scores: E(): 1.2e-10, 30.45% id in 197 aa putative V(vacuolar)-type ATP synthase subunit D	V-type ATP synthase subunit D EC 3.6.1.34	V-type ATPase, subunit D	V-type ATP synthase subunit D	V-type ATP synthase subunit D	V-type ATPase, subunit D	V-type ATP synthase subunit D	V-type ATP synthase subunit D	V-type sodium ATP synthase subunit D	Putative v-type ATPase subunit D	V-type ATPase, subunit D	V-type ATPase, subunit D	V-type ATPase, subunit D	V-type sodium ATP synthase subunit D	V-type ATPase, D subunit	V-type ATPase, D subunit	V-type ATP synthase subunit D	V-type ATPase, D subunit	V-type ATP synthase subunit D	V-type ATPase, D subunit	
CHLTR00311	V-type ATP synthase beta chain	ATP synthase beta chain	V-type ATP synthase beta chain	Similar to Thermococcus sp. V-type ATP synthase beta chain AtpB SWALL:VATB_THESI (SWALL:O32467) (463 aa) fasta scores: E(): 7.8e-40, 39.38% id in 452 aa, and to Chlamydophila caviae V-type ATP synthase beta chain AtpB or cca00683 SWALL:Q822J9 (EMBL:AE016996) (438 aa) fasta scores: E(): 4.7e-163, 97.26% id in 438 aa, and to Borrelia burgdorferi V-type ATP synthase beta chain AtpB or bb0093 SWALL:VATB_BORBU (SWALL:O51120) (434 aa) fasta scores: E(): 8.6e-93, 55.76% id in 434 aa putative V-type ATP synthase beta chain	V-type ATPase, subunit B	Similar to Thermococcus sp. V-type ATP synthase beta chain AtpB SWALL:VATB_THESI (SWALL:O32467) (463 aa) fasta scores: E(): 9.2e-44, 36.28% id in 452 aaTreponema pallidum V-type ATP synthase beta chain 1 AtpB1 or TP0427 SWALL:VAB1_TREPA (SWALL:O83442) (430 aa) fasta scores: E(): 2.8e-69, 47.92% id in 434 aa, and to putative V-type ATP synthase beta chain	go_component: hydrogen-transporting ATPase V1 domain [goid 0000221]; go_component: cytoplasm [goid 0005737]; go_function: hydrogen-transporting ATPase activity, rotational mechanism [goid 0046961]; go_process: vacuolar acidification [goid 0007035] V-type ATPase, B subunit, putative	transcript_id=ENSOCUT00000001013	transcript_id=ENSDNOT00000009721	V-type ATP synthase beta chain EC 3.6.1.34	transcript_id=ENSGACT00000019370	V-type ATPase, subunit B	transcript_id=ENSOGAT00000000567	transcript_id=ENSTBET00000003600	ATP synthase F1, beta subunit	V-type sodium ATP synthase subunit B	transcript_id=ENSSART00000008873	vacuolar ATP synthase subunit B, putative	V-type ATP synthase beta chain	Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) go_component: proton-transporting two-sector ATPase complex; go_function: ATP binding; hydrogen-transporting ATP synthase activity, rotational mechanism; hydrogen-transporting ATPase activity, rotational mechanism; go_process: ATP synthesis coupled proton transport; ATP biosynthesis	Membrane-bound ATP synthase, F1 sector, beta- subunit	Magnaporthe grisea vacuolar ATP synthase subunit B	V-type ATP synthase subunit B	Botrytis cinerea vacuolar ATP synthase subunit B	V-type ATP synthase subunit B	Lodderomyces elongisporus (LELG_03166.1) vacuolar ATP synthase subunit B (translation)	predicted protein	ustilago_maydis hypothetical protein similar to H+-ATPase beta 1 subunit	
CHLTR00312	V-type ATP synthase alpha chain	V-type sodium ATP synthase subunit A	V-type ATP synthase alpha chain	Similar to Desulfurococcus sp. V-type ATP synthase alpha chain AtpA SWALL:VATA_DESSY (SWALL:O06504) (585 aa) fasta scores: E(): 1e-76, 43.9% id in 533 aa, and to Chlamydophila caviae v-type ATP synthase alpha chain AtpA or cca00684 SWALL:Q822J8 (EMBL:AE016996) (591 aa) fasta scores: E(): 0, 96.1% id in 591 aa, and to Treponema pallidum V-type ATP synthase alpha chain 1 AtpA1 or tp0426 SWALL:VAA1_TREPA (SWALL:O83441) (589 aa) fasta scores: E(): 3.9e-99, 53.11% id in 578 aa putative V-type ATP synthase alpha chain	V-type ATPase, subunit A	V-type ATP synthase alpha chain	best blastp match gb|AAK33257.1| (AE006484) putative V-type Na+ -ATPase alpha subunit [Streptococcus pyogenes M1 GAS] putative V-type Na+ -ATPase alpha subunit	unknown EC_number 3.6.2.14 V-type ATP synthase alpha chain	Similar to Chlamydia muridarum V-type ATP synthase alpha chain AtpA or TC0582 SWALL:VATA_CHLMU (SWALL:Q9PK85) (591 aa) fasta scores: E(): 9.9e-92, 46.7% id in 576 aa, and to Treponema pallidum V-type ATP synthase alpha chain 1 AtpA1 or TP0426 SWALL:VAA1_TREPA (SWALL:O83441) (589 aa) fasta scores: E(): 1.8e-84, 46.41% id in 586 aa putative V-type ATP synthase alpha subunit	Archaeal/vacuolar-type H+-ATPase, subunit A	V-type sodium ATP synthase subunit A	A1AO H+ ATPase subunit A	Sodium-transporting two-sector ATPase	ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A [Source:HGNC Symbol;Acc:851]	AhaA A1A0 ATPase, subunit A	V-type sodium ATP synthase subunit A	V-type sodium ATP synthase subunit A	Sodium-transporting two-sector ATPase PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region: (2.3e-102) H+-transporting two-sector ATPase, alpha/beta subunit-like: (6.1e-36) KEGG: dra:DR0700 v-type ATP synthase, A subunit, ev=0.0, 91% identity	V-type ATP synthase alpha chain EC 3.6.1.34	transcript_id=ENSETET00000009901	V-type sodium ATP synthase subunit A	V-type ATPase, A subunit identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874	V-type ATPase, subunit A	V-type ATPase, A subunit identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874	Sodium-transporting two-sector ATPase	V-type sodium ATP synthase subunit A identified by match to protein family HMM PF00006; match to protein family HMM PF00306	Sodium-transporting two-sector ATPase	V-type sodium ATP synthase subunit A	
CHLTR00313	Uncharacterized protein CT_309	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	

CHLTR00314	V-type ATP synthase subunit E	Similar to Porphyromonas gingivalis W83 V-type ATPase, subunit E, putative PG1801 SWALL:AAQ66799 (EMBL:AE017178) (196 aa) fasta scores: E(): 1.4e-30, 51.02% id in 196 aa, and to Borrelia burgdorferi Vv-type ATP synthase subunit E AtpE or BB0096 SWALL:VATE_BORBU (SWALL:O51123) (200 aa) fasta scores: E(): 8e-05, 23.26% id in 202 aa putative V-type ATP synthase subunit E	V-type ATP synthase subunit E EC 3.6.1.34	V-type ATP synthase subunit E	V-type ATP synthase subunit E	ATP synthase subunit E	V-type ATP synthase subunit E	V-type ATP synthase subunit E	V-type ATP synthase subunit E	V-type ATP synthase subunit E	
CHLTR00315	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00316	Predicted ferredoxin	ferredoxin	predicted ferredoxin	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00317	Transaldolase	Transaldolase	Transaldolase	Transaldolase	Transaldolase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark transaldolase B	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 transaldolase a TalA or b2464 or c2989 or z3720 or ecs3326 SWALL:TALA_ECOLI (SWALL:P78258) (316 aa) fasta scores: E(): 5e-54, 49.67% id in 310 aa, and to Chlamydophila caviae transaldolase Tal or cca00689 SWALL:TAL_CHLCV (SWALL:Q822J3) (327 aa) fasta scores: E(): 4.6e-116, 95.09% id in 326 aa, and to Mus musculus Taldo1 protein SWALL:AAH04754 (EMBL:BC004754) (337 aa) fasta scores: E(): 4.6e-56, 52.51% id in 318 aa putative transaldolase	Transaldolase	Transaldolase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme transaldolase	transaldolase	Similar to: HI1125, TAL_HAEIN transaldolase	, predicted protein, len = 331 aa, probably transaldolase; predicted pI = 5.2950; good similarity to TAL_SYNEL, transaldolase in Synechococcus elongatus, EMBL: AP005370, BAC08019); Fasta scores: E():2.8e-64, 55.455% identity (57.547% ungapped) in 330 aa overlap, (aa 3-330 of , aa 2-321 of TAL_SYNEL) transaldolase, putative	Transaldolase MipB protein	Transaldolase	Similar to Q8EBH2 Transaldolase from Shewanella oneidensis (318 aa). FASTA: opt: 1030 Z-score: 1249.3 E(): 1.1e-61 Smith-Waterman score: 1030; 50.938 identity in 320 aa overlap. Transaldolase	Transaldolase	go_component: cytoplasm [goid 0005737]; go_function: transaldolase activity [goid 0004801]; go_process: pentose-phosphate shunt [goid 0006098] transaldolase	identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874 transaldolase	transaldolase	identified by similarity to SP:P30148; match to protein family HMM PF00923; match to protein family HMM TIGR00874 transaldolase	identified by similarity to SP:P30148; match to protein family HMM PF00923; match to protein family HMM TIGR00874 transaldolase	Transaldolase AB	Transaldolase AB	Transaldolase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 7592346, 11298760; Product type e : enzyme transaldolase B	Code: G; COG: COG0176 transaldolase B	
CHLTR00318	DNA-directed RNA polymerase subunit beta'	DNA-directed RNA polymerase subunit beta'	DNA-directed RNA polymerase subunit beta'	DNA-directed RNA polymerase subunit beta'	DNA-directed RNA polymerase subunit beta'	DNA-directed RNA polymerase beta chain	DNA-directed RNA polymerase subunit beta'	DNA-directed RNA polymerase subunit beta'	RNA polymerase beta' subunit	conserved gene DNA-directed RNA polymerase beta' subunit	RNA polymerase beta' subunit	DNA-directed RNA polymerase subunit beta'	identified by similarity to SP:P37871; match to protein family HMM PF00623; match to protein family HMM PF01854; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000 DNA-directed RNA polymerase, beta' subunit	DNA-directed RNA polymerase subunit beta'	DNA-directed RNA polymerase beta' chain	identified by similarity to SP:P00577; match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000 DNA-directed RNA polymerase, beta' subunit	DNA-directed RNA polymerase subunit beta'	DNA-directed RNA polymerase B prime subunit	DNA-directed RNA polymerase subunit beta'	DNA-directed RNA polymerase beta' chain	DNA-directed RNA polymerase subunit beta'	identified by similarity to SP:O83270; match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR01369; match to protein family HMM TIGR01612 DNA-directed RNA polymerase, beta' subunit	DNA-directed RNA polymerase subunit beta'	DNA-directed RNA polymerase	DNA-directed RNA polymerase subunit beta'	Mb0687, rpoC, len: 1316 aa. Equivalent to Rv0668, len: 1316 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 1316 aa overlap). rpoC, DNA-directed RNA polymerase, beta' chain (EC 2.7.7.6) (see first citation below), equivalent to P30761|RPOC_MYCLE|ML1890|S31146 DNA-directed RNA polymerase (EC 2.7.7.6) beta' chain from Mycobacterium leprae (1316 aa), FASTA scores: opt: 8295, E(): 0, (95.6% identity in 1316 aa overlap). Also highly similar to others e.g. CAB77429.1|AL160431 DNA-directed RNA polymerase beta' chain (fragment) from Streptomyces coelicolor (1059 aa); P37871|RPOC_BACSU from Bacillus subtilis (1199 aa), FASTA scores: opt: 2367, E(): 0, (52.9 identity in 1317 aa overlap); etc. BELONGS TO THE RNA POLYMERASE BETA' CHAIN FAMILY. DNA-DIRECTED RNA POLYMERASE (BETA' CHAIN) RPOC (TRANSCRIPTASE BETA' CHAIN) (RNA POLYMERASE BETA' SUBUNIT).	InterProMatches:IPR006592; Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350) RNA polymerase (beta subunit)	DNA-directed RNA polymerase beta' subunit	DNA-directed RNA polymerase subunit beta'	
CHLTR00319	DNA-directed RNA polymerase subunit beta	DNA-directed RNA polymerase subunit beta	DNA-dependent RNA polymerase subunit beta	DNA-directed RNA polymerase subunit beta	DNA-directed RNA polymerase subunit beta	RNA polymerase B-subunit	conserved gene DNA-directed RNA polymerase beta subunit	RNA polymerase B-subunit	identified by similarity to EGAD:32012; match to protein family HMM PF00562; match to protein family HMM PF04560; match to protein family HMM PF04561; match to protein family HMM PF04563; match to protein family HMM PF04565 DNA-directed RNA polymerase, beta subunit	RNA polymerase beta subunit	DNA-directed RNA polymerase subunit beta	DNA-directed RNA polymerase beta subunit	DNA-directed RNA polymerase subunit beta	DNA-directed RNA polymerase beta chain	DNA-directed RNA polymerase subunit beta	DNA-directed RNA polymerase subunit beta	identified by similarity to SP:P00575; match to protein family HMM PF00562; match to protein family HMM PF04560; match to protein family HMM PF04561; match to protein family HMM PF04565; match to protein family HMM TIGR01612 DNA-directed RNA polymerase, beta subunit	DNA-directed RNA polymerase subunit beta	DNA-directed RNA polymerase	DNA-directed RNA polymerase subunit beta	Mb0686, rpoB, len: 1172 aa. Equivalent to Rv0667, len: 1172 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 1172 aa overlap). rpoB, DNA-directed RNA polymerase, beta chain (EC 2.7.7.6) (see first and third citations below), equivalent to P30760|RPOB_MYCLE|ML1891 DNA-directed RNA polymerase beta chain from Mycobacterium leprae (1178 aa). Also highly similar to others e.g. AAF60349.1|AF242549_1|AF242549 DNA-dependent RNA polymerase beta subunit from Amycolatopsis mediterranei (1167 aa); CAB77428.1|AL160431 DNA-directed RNA polymerase beta chain from Streptomyces coelicolor (1161 aa); etc. Start site chosen on basis of RBS but alternative start exists at position 14359.  BELONGS TO THE RNA POLYMERASE BETA CHAIN FAMILY. DNA-DIRECTED RNA POLYMERASE (BETA CHAIN) RPOB (TRANSCRIPTASE BETA CHAIN) (RNA POLYMERASE BETA SUBUNIT)	InterProMatches:IPR010243; Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350) RNA polymerase (beta subunit)	DNA-directed RNA polymerase beta subunit	DNA-directed RNA polymerase subunit beta	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark RNA polymerase beta subunit	RNA-polymerase DNA-directed beta subunit	DNA-directed RNA polymerase subunit beta	DNA-directed RNA polymerase subunit beta	
CHLTR00320	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50s ribosomal protein L7/l12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal subunit protein L7/L12	conserved gene 50S ribosomal protein L7/L12	50S ribosomal subunit protein L7/L12	50S ribosomal protein L7/L12	identified by match to protein family HMM PF00542; match to protein family HMM TIGR00855 ribosomal protein L7/L12	50S ribosomal protein L7/L12	LSU ribosomal protein L12P (L7/L12)	50S ribosomal protein L12	identified by similarity to SP:P29396; match to protein family HMM PF00542; match to protein family HMM TIGR00855 ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	identified by similarity to SP:P29396; match to protein family HMM PF00542; match to protein family HMM TIGR00855 ribosomal protein L7/L12	50S ribosomal protein L7/L12	Ribosomal protein L7/L12	50S ribosomal protein L7/L12	Mb0671, rplL, len: 130 aa. Equivalent to Rv0652, len: 130 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 130 aa overlap). Probable rplL (alternate gene name: L7|L12), 50S ribosomal protein L7/L12, equivalent to NP_302275.1|NC_002677 50S ribosomal protein L7/L12 from Mycobacterium leprae (130 aa); and P37381|RL7_MYCBO 50s ribosomal protein L7/L12 from Mycobacterium bovis (130 aa). Also highly similar to others e.g. P02396|RL7_STRGR 50S RIBOSOMAL PROTEIN L7/L12 from Streptomyces griseus (127 aa); etc. BELONGS TO THE L12P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 50S RIBOSOMAL PROTEIN L7/L12 RPLL (SA1)	InterProMatches:IPR000206; Molecular Function: structural constituent of ribosome (GO:0003735),Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein L12 (BL9)	
CHLTR00321	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	identified by match to protein family HMM PF00466 ribosomal protein L10	LSU ribosomal protein L10P	identified by match to protein family HMM PF00466 ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	Mb0670, rplJ, len: 178 aa. Equivalent to Rv0651, len: 178 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 178 aa overlap). Probable rplJ, 50S ribosomal protein L10, equivalent to NP_302276.1|NC_002677 50S ribosomal protein L10 from Mycobacterium leprae (177 aa). Also highly similar to others e.g. P36257|RL10_STRGR 50s ribosomal protein L10 from Streptomyces griseus (185 aa), FASTA scores: opt: 633, E(): 0, (59.0 % identity in 173 aa overlap); etc. BELONGS TO THE L10P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 50S RIBOSOMAL PROTEIN L10 RPLJ	InterProMatches:IPR002363; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein L10 (BL5)	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	Similar to Thermus thermophilus 50S ribosomal protein L10 RplJ SWALL:RL10_THETH (SWALL:Q8VVE3) (173 aa) fasta scores: E(): 1.2e-09, 31.51% id in 165 aa, and to Chlamydophila caviae 50S ribosomal protein L10 RplJ or cca00693 SWALL:Q822I9 (EMBL:AE016996) (170 aa) fasta scores: E(): 6.5e-56, 93.52% id in 170 aa, and to Chlamydia muridarum 50S ribosomal protein L10 RplJ or tc0591 SWALL:RL10_CHLMU (SWALL:Q9PK78) (172 aa) fasta scores: E(): 1e-50, 84.61% id in 169 aa putative 50S ribosomal protein L10	similar to BR1246, ribosomal protein L10 RplJ, ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	identified by match to PFAM protein family HMM PF00466 ribosomal protein L10	Ortholog of S. aureus MRSA252 (BX571856) SAR0544 50S ribosomal protein L10	(BL5) 50S ribosomal protein L10	50S ribosomal protein L10	best blastp match sp|P82480|RL10_STRPY 50S RIBOSOMAL PROTEIN L10 50S ribosomal protein L10	identified by match to protein family HMM PF00466 ribosomal protein L10	50S Ribosomal protein L10	
CHLTR00322	50S ribosomal protein L1	50S ribosomal protein L1	LSU ribosomal protein L1P	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50s ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	conserved gene 50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	identified by match to protein family HMM PF00687; match to protein family HMM TIGR01169 ribosomal protein L1	50S ribosomal protein L1	LSU ribosomal protein L1P	50S ribosomal protein L1	identified by match to protein family HMM PF00687; match to protein family HMM TIGR01169 ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	identified by similarity to SP:P04447; match to protein family HMM PF00687; match to protein family HMM TIGR01169 ribosomal protein L1	50S ribosomal protein L1	Ribosomal protein L1	50S ribosomal protein L1	Mb0660, rplA, len: 235 aa. Equivalent to Rv0641, len: 235 aa, from Mycobacterium tuberculosis strain H37Rv (99.6% identity in 235 aa overlap). Probable rplA, 50S ribosomal protein L1, equivalent to NP_302281.1|NC_002677 50S ribosomal protein L1 from Mycobacterium leprae (235 aa). Also highly similar to others e.g. P3625|RL1_STRGR 50s ribosomal protein L1 from Streptomyces griseus (240 aa), FASTA scores: opt: 1081, E(): 0, (72.2% identity in 230 aa overlap); etc. BELONGS TO THE L1P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 50S RIBOSOMAL PROTEIN L1 RPLA	
CHLTR00323	50S ribosomal protein L11	50S ribosomal protein L11	LSU ribosomal protein L11P	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50s ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	conserved gene 50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	identified by match to protein family HMM PF00298; match to protein family HMM PF03946; match to protein family HMM TIGR01632 ribosomal protein L11	50S ribosomal protein L11	LSU ribosomal protein L11P	50S ribosomal protein L11	identified by similarity to SP:P29395; match to protein family HMM PF00298; match to protein family HMM PF03946; match to protein family HMM TIGR01632 ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	identified by similarity to SP:P29395; match to protein family HMM PF00298; match to protein family HMM PF03946; match to protein family HMM TIGR01632 ribosomal protein L11	50S ribosomal protein L11	Ribosomal protein L11	50S ribosomal protein L11	Mb0659, rplK, len: 142 aa. Equivalent to Rv0640, len: 142 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 142 aa overlap). Probable rplK, 50S ribosomal protein L11, equivalent to NP_302282.1|NC_002677 50S ribosomal protein L11 from Mycobacterium leprae (142 aa). Also highly similar to others e.g.  P48954|RL11_STRCO|SCD82.19 50s ribosomal protein L11 from Streptomyces coelicolor (144 aa), FASTA scores: opt: 763, E(): 0, (84.6% identity in 143 aa overlap); etc. Contains PS00359 Ribosomal protein L11 signature. BELONGS TO THE L11P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 50S RIBOSOMAL PROTEIN L11 RPLK	
CHLTR00324	Transcription antitermination protein nusG	Transcription antitermination protein nusG	Transcription antitermination protein nusG	Transcription antitermination protein nusG	transcription antitermination protein	Transcription antitermination protein nusG	Transcription antitermination protein nusG	transcription antitermination protein NusG	conserved gene transcription antitermination protein NusG	transcription antitermination protein NusG	Transcription antitermination protein nusG	identified by similarity to EGAD:9622; match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922 transcription termination/antitermination factor NusG	NusG Transcription antitermination protein	transcription antitermination protein NusG	identified by match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922 transcription termination/antitermination factor NusG	Transcription antitermination protein nusG	transcription antitermination factor	Transcription antitermination protein nusG	Transcription antitermination protein nusG	TRANSCRIPTION ANTITERMINATION PROTEIN NUSG	Transcription antitermination protein nusG	identified by similarity to SP:P16921; match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922 transcription antitermination protein NusG	Transcription antitermination protein nusG	Transcription antitermination protein nusG	Transcription antitermination protein nusG	Mb0658, nusG, len: 238 aa. Equivalent to Rv0639, len: 238 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 238 aa overlap). Probable nusG, transcription antitermination protein, equivalent to NP_302283.1|NC_002677 transcription antitermination protein nusG from Mycobacterium leprae (228 aa). Also highly similar to others e.g. P36260|NUSG_STRGR from Streptomyces griseus (294 aa), FASTA scores: opt: 845, E(): 0, (55.4% identity in 233 aa overlap); etc. Note that shorter at the N-terminus than other nusG. Contains PS01014 Transcription termination factor nusG signature.  BELONGS TO THE NUSG FAMILY. PROBABLE TRANSCRIPTION ANTITERMINATION PROTEIN NUSG	InterProMatches:IPR001062; Molecular Function: transcriptional elongation regulator activity (GO:0003711) transcription antitermination factor	transcriptional antitermination factor	Transcription antitermination protein nusG	
CHLTR00325	Preprotein translocase subunit	preprotein translocase SecE chain	SecE protein translocase subunit	Protein translocase subunit	Protein translocase subunit	Protein translocase subunit	
CHLTR00326	Elongation factor Tu	Elongation factor Tu	Elongation factor Tu	Elongation factor Tu	Elongation factor Tu	elongation factor	Elongation factor Tu	elongation factor Tu	conserved gene elongation factor Tu (EF-Tu)	elongation factor Tu	Elongation factor Tu	identified by match to protein family HMM PF00009; match to protein family HMM PF03143; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00485 translation elongation factor Tu	Elongation factor Tu	EF-TU Protein Translation Elongation Factor Tu	elongation factor EF-Tu	identified by similarity to SP:P48864; match to protein family HMM PF00009; match to protein family HMM PF03143; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00485 translation elongation factor Tu	Elongation factor Tu	translation elongation factor EF-Tu	Elongation factor Tu	Elongation factor Tu	Translation elongation factor Tu	Elongation factor Tu	identified by similarity to SP:P48864; match to protein family HMM PF00009; match to protein family HMM PF03143; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00485 translation elongation factor Tu	Elongation factor Tu	Elongation factor Tu	Mb0704, tuf, len: 396 aa. Equivalent to Rv0685, len: 396 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 396 aa overlap). Probable tuf, elongation factor EF-Tu, equivalent to JC2262 translation elongation factor Tu from Mycobacterium leprae (396 aa).  Also highly similar to others e.g. P42439|EFTU_CORGL ELONGATION FACTOR TU (EF-TU) from Corynebacterium glutamicum (396 aa); etc. Contains PS00017 ATP/GTP-binding site motif A, and PS00301 GTP-binding elongation factors signature. BELONGS TO THE GTP-BINDING ELONGATION FACTOR FAMILY, EF-TU/EF-1A SUBFAMILY. PROBABLE ELONGATION FACTOR TU TUF (EF-TU)	InterProMatches:IPR005225, IPR004541; Molecular Function: GTP binding (GO:0005525), Molecular Function: translation elongation factor activity (GO:0003746), Molecular Function: GTP binding (GO:0005525), Biological Process: translational elongation (GO:0006414) elongation factor Tu	translation elongation factor Tu	Elongation factor Tu	
CHLTR00327	Translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	conserved gene translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	identified by match to protein family HMM PF00575; match to protein family HMM TIGR00008 translation initiation factor IF-1	Translation initiation factor IF-1	translation initiation factor IF-1	translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	identified by similarity to SP:P20458; match to protein family HMM PF00575; match to protein family HMM TIGR00008 translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	Mb3491c, infA, len: 73 aa. Equivalent to Rv3462c, len: 73 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 73 aa overlap). Probable infA, initiation factor IF-1, equivalent to P45957|ML1962|INFA TRANSLATION INITIATION FACTOR IF-1 from Mycobacterium bovis (72 aa) and Mycobacterium leprae (72 aa), FASTA scores: opt: 472, E(): 6.6e-28, (100.0% identity in 72 aa overlap). Also highly similar to others e.g.  O54209|IF1_STRCO|INFA|SC6G4.03 from Streptomyces coelicolor (73 aa), FASTA scores: opt: 424, E(): 2e-24, (84.95% identity in 73 aa overlap); O50630|IF1_BACHD|INFA|BH0158 from Bacillus halodurans (71 aa), FASTA scores: opt: 388, E(): 8.1e-22, (77.8% identity in 72 aa overlap); Q9XD14|IF1_LEPIN|INFA from Leptospira interrogans (71 aa), FASTA scores: opt: 376, E(): 6e-21, (80.0% identity in 70 aa overlap); etc. CONTAINS 1 'S1 MOTIF' DOMAIN. BELONGS TO THE IF-1 FAMILY. PROBABLE TRANSLATION INITIATION FACTOR IF-1 INFA	InterProMatches:IPR004368; Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413) initiation factor IF-I	translation initiation factor IF-I	Translation initiation factor IF-1	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark initiation factor IF-1	translation initiation factor IF-1 translational initiation IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	
CHLTR00328	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	
CHLTR00329	Putative uncharacterized protein	Similar to Escherichia coli SufE protein or B1679 SWALL:SUFE_ECOLI (SWALL:P76194) (138 aa) fasta scores: E(): 8.1e-12, 32.84% id in 137 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT2547 SWALL:Q8A4Q0 (EMBL:AE016936) (141 aa) fasta scores: E(): 1.8e-50, 92.9% id in 141 aa putative SufE Fe/S-cluster-related protein	Similar to Q8PK22 Hypothetical protein from Xanthomonas axonopodis (145 aa). FASTA: opt: 415 Z-score: 523.5 E(): 2.6e-21 Smith-Waterman score: 415; 45.652 identity in 138 aa overlap ORF ftt1409c conservered hypothetical protein	SufE protein probably involved in Fe-S center assembly	Fe-S metabolism protein, SufE family identified by match to protein family HMM PF02657	Fe-S metabolism associated SufE	conserved hypothetical protein	SufE protein	Fe-S metabolism associated SufE	conservered hypothetical protein Similar to Q8PK22 Hypothetical protein from Xanthomonas axonopodis (145 aa). FASTA: opt: 415 Z-score: 523.5 E(): 2.6e-21 Smith-Waterman score: 415; 45.652 identity in 138 aa overlap ORF ftt1409c	protein containing Fe-S metabolism associated do main	conserved hypothetical protein; possible sufE protein	SufE probably involved in Fe-S center assembly	SufE family Fe-S protein	conservered hypothetical protein	sulfur acceptor protein SufE	Putative regulator of cysteine desulfurase activity	Putative uncharacterized protein	Putative uncharacterized protein	Cysteine desulfuration protein, SufE	Fe-S cluster assembly related protein	Putative cysteine desulfuration protein sufE	Putative Fe/S cluster cysteine desulfuration protein	Sulfur acceptor protein SufE	Fe-S metabolism associated SufE	Fe-S metabolism associated SufE	Putative uncharacterized protein	Putative uncharacterized protein	Fe-S metabolism associated	
CHLTR00330	Putative uncharacterized protein	pseudo	pseudo	

CHLTR00332	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00333	N-(5'-phosphoribosyl)anthranilate isomerase	N-(5'-phosphoribosyl)anthranilate isomerase	N-(5'-phosphoribosyl)anthranilate isomerase	N-(5'-phosphoribosyl)anthranilate isomerase	conserved gene phosphoribosyl anthranilate isomerase	N-(5'-phosphoribosyl)anthranilate isomerase	N-(5'-phosphoribosyl)anthranilate isomerase	identified by similarity to EGAD:40212; match to protein family HMM PF00697 N-(5'phosphoribosyl)-anthranilate isomerase	N-(5'-phosphoribosyl) anthranilate isomerase	identified by similarity to SP:Q56320; match to protein family HMM PF00697 N-(5'phosphoribosyl)anthranilate isomerase	N-(5'-phosphoribosyl)anthranilate isomerase	N-(5'-phosphoribosyl)-anthranilate isomerase	N-(5'-phosphoribosyl)anthranilate isomerase	N-(5'-phosphoribosyl)anthranilate isomerase	identified by match to protein family HMM PF00697 N-(5'phosphoribosyl)anthranilate isomerase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark N-(5'-phosphoribosyl) anthranilate isomerase	similar to BR2111, N-(5phosphoribosyl)anthranilate isomerase TrpF, N-(5phosphoribosyl)anthranilate isomerase	N-(5'-phosphoribosyl)anthranilate isomerase	phosphoriborylanthranilate isomerase	Putative N-(5'-phosphoribosyl)anthranilate isomerase	Ortholog of S. aureus MRSA252 (BX571856) SAR1384 N-(5'phosphoribosyl)anthranilate (PRA) isomerase	phosphoriborylanthranilate isomerase	identified by similarity to SP:Q56320; match to protein family HMM PF00697 N-(5'phosphoribosyl)anthranilate isomerase	Evidence 1 : Function experimentally demonstrated in the studied organism; PubMedId : 2299982, 2211532; Product type e : enzyme N-(5'-phosphoribosyl)anthranilate isomerase (PRAI)	Phosphoribosylanthranilate isomerase.	COG0135 N-(5'-phosphoribosyl)anthranilate isomerase	N-(5'-phosphoribosyl)anthranilate isomerase	N-(5'-phosphoribosyl)-anthranilate isomerase	N-(5'-phosphoribosyl) anthranilate isomerase	
CHLTR00334	Triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	identified by similarity to EGAD:19971; match to protein family HMM PF00121; match to protein family HMM TIGR00419 triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	identified by match to protein family HMM PF00121 triosephosphate isomerase	InterProMatches:IPR000652; Molecular Function: triose-phosphate isomerase activity (GO:0004807), Biological Process: metabolism (GO:0008152) triose phosphate isomerase	triose-phosphate isomerase	Triosephosphate isomerase	COG0149 Triosephosphate isomerase triose-phosphate isomerase	Triosephosphate isomerase	Similar to Chlamydia pneumoniae triosephosphate isomerase tpia or tpi or cpn1063 or cp0786 SWALL:TPIS_CHLPN (SWALL:Q9Z6J6) (254 aa) fasta scores: E(): 3.1e-59, 59.84% id in 254 aa, and to Aquifex aeolicus triosephosphate isomerase tpia or tima or aq_360 SWALL:TPIS_AQUAE (SWALL:O66686) (247 aa) fasta scores: E(): 6.6e-37, 44.62% id in 251 aa triosephosphate isomerase	Triosephosphate isomerase	Triosephosphate isomerase	triosephosphate isomerase	Triosephosphate isomerase	identified by match to PFAM protein family HMM PF00121 triosephosphate isomerase	Putative triosephosphate isomerase	Ortholog of S. aureus MRSA252 (BX571856) SAR0830 triosephosphate isomerase	
CHLTR00335	Exodeoxyribonuclease 7 large subunit	Exodeoxyribonuclease 7 large subunit	Exodeoxyribonuclease 7 large subunit	Exodeoxyribonuclease VII, large subunit	exodeoxyribonuclease VII large subunit	exodeoxyribonuclease VII (large subunit) EX7L	Similar to Chlamydia pneumoniae probable exodeoxyribonuclease VII large subunit XseA or cpn1062 or cp0787 SWALL:EX7L_CHLPN (SWALL:Q9Z6J7) (554 aa) fasta scores: E(): 1.5e-133, 62.27% id in 546 aa, and to Haemophilus influenzae probable exodeoxyribonuclease VII large subunit XseA or hi0397 SWALL:EX7L_HAEIN (SWALL:P43913) (439 aa) fasta scores: E(): 3.5e-47, 39.94% id in 363 aa probable exodeoxyribonuclease VII large subunit	similar to BRA0764, exodeoxyribonuclease VII, large subunit XseA, exodeoxyribonuclease VII, large subunit	hypothetical protein, similar to exodeoxyribonuclease large subunit	Exonuclease VII large subunit	Ortholog of S. aureus MRSA252 (BX571856) SAR1601 putative exodeoxyribonuclease VII large subunit	hypothetical protein, similar to exodeoxyribonuclease large subunit	exodeoxyribonuclease VII large subunit	Similar to Escherichia coli exodeoxyribonuclease VII large subunit XseA SW:EX7L_ECOLI (P04994) (456 aa) fasta scores: E(): 3.4e-44, 35.214% id in 443 aa, and to Bacillus subtilis probable exodeoxyribonuclease VII large subunit XseA SW:EX7L_BACSU (P54521) (448 aa) fasta scores: E(): 4.9e-61, 44.444% id in 441 aa putative exodeoxyribonuclease VII large subunit	Best Blastp Hit: pir||B81850 exonuclease VII large subunit NMA1575 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380216|emb|CAB84802.1| (AL162756) exonuclease VII large subunit [Neisseria meningitidis] COG1570 Exonuclease VII, large subunit putative exonuclease VII large subunit	identified by similarity to EGAD:17808; match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237 exodeoxyribonuclease VII, large subunit	similar to gi|27468122|ref|NP_764759.1| [Staphylococcus epidermidis ATCC 12228], percent identity 74 in 445 aa, BLASTP E(): 0.0 exodeoxyribonuclease large subunit	Exonuclease VII, large subunit:OB-fold nucleic acid binding domain	identified by match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237 exodeoxyribonuclease VII, large subunit	exodeoxyribonuclease VII, large subunit identified by match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237	exodeoxyribonuclease VII, large subunit identified by match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237	exodeoxyribonuclease VII, large subunit identified by match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237	exodeoxyribonuclease VII large subunit	probable exodeoxyribonuclease VII large subunit	exodeoxyribonuclease VII, large subunit	putative exodeoxyribonuclease VII large subunit similarity:fasta; with=UniProt:EX7L_ECOLI (EMBL:CEK129H2R); Escherichia coli.; xseA; Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) (Exonuclease VII large subunit).; length=456; id 34.990; 483 aa overlap; query 14-495; subject 8-438 similarity:fasta; with=UniProt:EX7L_AGRT5 (EMBL:AE007966); Agrobacterium tumefaciens (strain C58/ATCC 33970).; xseA; Probable exodeoxyribonuclease VII large subunit (EC 3.1.11.6) (Exonuclease VII large subunit).; length=532; id 75.940; 532 aa overlap; query 1-526; subject 1-532	exodeoxyribonuclease VII large subunit EC 3.1.11.6	exodeoxyribonuclease VII large subunit protein similar to xseA (AGR_C_461p) [Agrobacterium tumefaciens] and xseA (SMc00378) [Sinorhizobium meliloti] Similar to entrez-protein:Q8UIM4 Putative location:bacterial cytoplasm Psort-Score: 0.2928; go_component: exodeoxyribonuclease VII complex [goid 0009318]; go_function: nucleic acid binding [goid 0003676]; go_function: exonuclease activity [goid 0004527]; go_function: hydrolase activity [goid 0016787]; go_function: nuclease activity [goid 0004518]; go_function: exodeoxyribonuclease VII activity [goid 0008855]; go_process: DNA catabolism [goid 0006308]	exonuclease VII, large subunit	
CHLTR00336	Exodeoxyribonuclease 7 small subunit	exonuclease VII small subunit; COG1722 exodeoxyribonuclease VII small subunit	identified by match to protein family HMM PF02609; match to protein family HMM TIGR01280 exodeoxyribonuclease VII, small subunit	exodeoxyribonuclease VII, small subunit	exodeoxyribonuclease VII, small subunit	exodeoxyribonuclease VII small subunit EC 3.1.11.6	exodeoxyribonuclease VII, small subunit	exodeoxyribonuclease VII, small subunit	exodeoxyribonuclease VII, small subunit TIGRFAM: exodeoxyribonuclease VII, small subunit PFAM: Exonuclease VII, small subunit KEGG: rpb:RPB_4459 exodeoxyribonuclease VII, small subunit	exodeoxyribonuclease VII small subunit	exodeoxyribonuclease VII, small subunit	Exodeoxyribonuclease small subunit	Exodeoxyribonuclease VII, small subunit	Exodeoxyribonuclease VII, small subunit	Exodeoxyribonuclease VII, small subunit	Exodeoxyribonuclease VII small subunit	Exodeoxyribonuclease VII small subunit	Exonuclease VII small subunit	Probable exodeoxyribonuclease VII small subunit	Exodeoxyribonuclease VII small subunit	Exodeoxyribonuclease VII, small subunit	
CHLTR00337	Putative uncharacterized protein	hypothetical cytosolic protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00338	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	Dxs	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxyxylulose-5-phosphate synthase	identified by match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00204 1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	identified by match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00204 1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	Mb2701c, dxs1, len: 638 aa. Equivalent to Rv2682c, len: 638 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 638 aa overlap). Probable dxs1, 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.-.-), equivalent to Q50000|DXS_MYCLE|TKTB|ML1038 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE from Mycobacterium leprae (643 aa), FASTA scores: opt: 3635, E(): 5.6e-209, (86.4% identity in 632 aa overlap). Also highly similar to other Q9X7W3|DXS_STRCO|DXS|SC6A5.17 from Streptomyces coelicolor (656 aa), FASTA scores: opt: 2501, E(): 2e-141, (61.3% identity in 623 aa overlap); Q9K971|DXS_BACHD|DXS|BH2779 from Bacillus halodurans (629 aa), FASTA scores: opt: 1612, E(): 1.8e-88, (41.35% identity in 619 aa overlap); P77488|DXS_ECOLI|DXS|B0420 from Escherichia coli strain K12 (619 aa), FASTA scores: opt: 1511, E(): 1.8e-82, (39.5% identity in 625 aa overlap); etc. Also similar to O50408|Rv3379c|MTV004.37c from Mycobacterium tuberculosis (536 aa). BELONGS TO THE TRANSKETOLASE FAMILY. DXS SUBFAMILY. COFACTOR: THIAMINE PYROPHOSPHATE. Note that previously known as dxs. PROBABLE 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE DXS1 (1-DEOXYXYLULOSE-5-PHOSPHATE SYNTHASE) (DXP SYNTHASE) (DXPS)	InterProMatches:IPR005477; Molecular Function: 1-deoxy-D-xylulose-5-phosphate synthase activity (GO:0008661), Biological Process: terpenoid biosynthesis (GO:0016114) 1-deoxyxylulose-5-phosphate synthase	1-deoxy-D-xylulose 5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark deoxyxylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	IPR005474: Transketolase, N terminal; IPR005475: Transketolase, central region 1-deoxyxylulose-5-phosphate synthase; flavoprotein	similar to Salmonella typhi CT18 1-deoxyxylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase	Similar to Chlamydia pneumoniae 1-deoxy-D-xylulose 5-phosphate synthase dxs or cpn1060 or cp0790 SWALL:DXS_CHLPN (SWALL:Q9Z6J9) (644 aa) fasta scores: E(): 2.5e-192, 72.64% id in 636 aa, and to Clostridium acetobutylicum 1-deoxy-D-xylulose 5-phosphate synthase dxs or cac2077 SWALL:DXS_CLOAB (SWALL:Q97HD5) (619 aa) fasta scores: E(): 4.5e-90, 38.88% id in 625 aa 1-deoxy-D-xylulose 5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	similar to BR0436, deoxyxylulose-5-phosphate synthase Dxs, deoxyxylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	1-deoxy-D-xylulose-5-phosphate synthase	
CHLTR00339	Pyruvate kinase	Pyruvate kinase	pyruvate kinase	Pyruvate kinase	pyruvate kinase	Pyruvate kinase	Pyruvate kinase	identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064 pyruvate kinase	pyruvate kinase	Similar to Bacillus subtilis pyruvate kinase Pyk or PykA or BSU29180 SWALL:KPYK_BACSU (SWALL:P80885) (585 aa) fasta scores: E(): 1.3e-59, 40.08% id in 479 aa, and to Clostridium acetobutylicum pyruvate kinase Pyk or PykA or CAC0518 SWALL:KPYK_CLOAB (SWALL:O08309) (473 aa) fasta scores: E(): 4.2e-60, 41.22% id in 456 aa pyruvate kinase	pyruvate kinase	identified by match to PFAM protein family HMM PF00224 pyruvate kinase	Ortholog of S. aureus MRSA252 (BX571856) SAR1776 pyruvate kinase	pyruvate kinase	identified by match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064 pyruvate kinase	pyruvate kinase, putative	Pyruvate kinase	pyruvate kinase	go_component: cytosol [goid 0005829]; go_function: pyruvate kinase activity [goid 0004743]; go_process: pyruvate metabolism [goid 0006090]; go_process: glycolysis [goid 0006096] pyruvate kinase	Pyruvate kinase	Pyruvate kinase	identified by sequence similarity; putative; ORF located using Glimmer;GeneMark; Blastx; COG0469 pyruvate kinase	identified by similarity to SP:Q44473; match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064 pyruvate kinase	Pyruvate kinase	Similar to Bacillus licheniformis pyruvate kinase Pyk SW:KPYK_BACLI (P51181) (585 aa) fasta scores: E(): 2.9e-125, 62.28% id in 586 aa, and to Escherichia coli, and pyruvate kinase I PykF SW:KPY1_ECOLI (P14178) (470 aa) fasta scores: E(): 9.9e-72, 48.53% id in 478 aa pyruvate kinase	identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064 pyruvate kinase	identified by similarity to EGAD:108035; match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064 pyruvate kinase	
CHLTR00340	UvrABC system protein A	Similar both N-terminal and C-terminal region to Thermotoga maritima UvrABC system protein A UvrA or TM0480 SWALL:UVRA_THEMA (SWALL:Q9WYV0) (916 aa) fasta scores: E(): 6.2e-72, 36.87% id in 922 aa, and to Bacillus subtilis UvrABC system protein A UvrA or BSU35160 SWALL:UVRA_BACSU (SWALL:O34863) (957 aa) fasta scores: E(): 9.9e-45, 37.84% id in 938 aa. Note: This CDS seems to have been duplicated internally as both N- and C-terminal regions present similaritites to same whole database hits putative SOS response nuclease	similar to excinuclease ABC subunit A (DNA repair ATP-binding)	Excinuclease ABC subunit A, ATPase	Excinuclease ABC, A subunit	Excinuclease ABC, A subunit	Excinuclease ABC, A subunit	putative excinuclease ABC subunit	Excinuclease ABC, A subunit	excinuclease ABC subunit A	UvrA family protein	excinuclease ABC, subunit A, form 2 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630	excinuclease ABC, A subunit	UvrABC system protein A-like	excinuclease ABC, A subunit	excinuclease ABC, A subunit KEGG: bur:Bcep18194_C7351 excinuclease ABC, A subunit TIGRFAM: excinuclease ABC, A subunit PFAM: ABC transporter related SMART: AAA ATPase	excinuclease ABC, A subunit	excinuclease ABC, A subunit KEGG: rfr:Rfer_3814 excinuclease ABC, A subunit TIGRFAM: excinuclease ABC, A subunit PFAM: ABC transporter-related protein SMART: AAA ATPase	Excinuclease ABC, A subunit	Excinuclease ABC, A subunit	excinuclease ABC, A subunit KEGG: bcn:Bcen_5608 excinuclease ABC, A subunit TIGRFAM: excinuclease ABC, A subunit PFAM: ABC transporter related SMART: AAA ATPase	putative excinuclease ABC subunit UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A). The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB the uvrA molecules dissociate (By similarity). InterPro: Excinuclease ABC A subunit High confidence in function and specificity	Excinuclease ABC, A subunit	UvrA family protein	excinuclease ABC, subunit A, form 2 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630	UvrABC system, A protein identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630	excinuclease ABC subunit A	Putative excinuclease ABC subunit A (DNA repair ATP-binding) ABC transporter protein	Excinuclease ABC, ATPase subunit (A2)	
CHLTR00341	DNA Pol III Gamma and Tau	DNA polymerase III gamma and tau subunits	DNA-directed DNA polymerase III, delta subunit	DNA polymerase III gamma/tau subunit	DNA polymerase III delta prime subunit protein	InterProMatches:IPR008921; DNA polymerase III DNA polymerase III (gamma and tau subunits)	DNA-directed DNA polymerase III gamma and tau DnaX	Similar to Bacillus subtilis DNA polymerase III subunit gamma/tau DnaX or DnaH SWALL:DP3X_BACSU (SWALL:P09122) (563 aa) fasta scores: E(): 1.4e-43, 37.71% id in 411 aa and to Chlamydia pneumoniae DNA polymerase III gamma and tau DnaX_1 or cpn0040 or cp0735 SWALL:Q9Z9E1 (EMBL:AE001589) (442 aa) fasta scores: E(): 2.5e-103, 66.51% id in 448 aa DNA polymerase III subunit gamma/tau	DNA-directed DNA polymerase III chain	DNA polymerase III, gamma and tau subunits	go_component: DNA replication factor C complex [goid 0005663]; go_function: DNA binding [goid 0003677]; go_function: ATP binding [goid 0005524]; go_process: DNA replication [goid 0006260] replication factor C, subunit 3, putative	DNA-directed DNA polymerase	DNA polymerase III gamma/tau EC 2.7.7.7	DNA-directed DNA polymerase	transcript_id=ENSGACT00000002715	DNA-directed DNA polymerase	DNA polymerase III, subunits gamma and tau	DNA polymerase III, tau and gamma subunits	DNA polymerase III, gamma/tau subunit	DNA polymerase III, subunits gamma and tau KEGG: mmc:Mmcs_4909 DNA polymerase III, subunits gamma and tau TIGRFAM: DNA polymerase III, subunits gamma and tau PFAM: AAA ATPase, central domain protein SMART: AAA ATPase	DNA polymerase III, g and t subunits COG_category L;COG_number COG0718; DnaX	DNA polymerase III subunit gamma/tau	DNA-directed DNA polymerase III chain, putative	replication factor C, subunit 4, putative	predicted protein go_function: ATP binding	DNA polymerase III, gamma and tau subunits equivalent gene in S.pneumoniae TIGR4 = SP0865; equivalent gene in S.pneumoniae R6 = spr0769; identified by match to protein family HMM PF00004; match to protein family HMM TIGR02397	DNA polymerase III, delta prime subunit	DNA polymerase III, gamma and tau subunits	Probable DNA polymerase III subunit	
CHLTR00342	UPF0133 protein CT_335	Similar to hypothetical protein hypothetical protein	conserved gene hypothetical protein	Similar to hypothetical protein hypothetical protein	UPF0133 protein lp_0699	identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 conserved hypothetical protein TIGR00103	Hypothetical UPF0133 protein SE2306	Putative uncharacterized protein	conserved hypothetical YaaK	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Similar to many proteins of undefined function including: Chlamydia pneumoniae upf0233 hypothetical protein cpn0039/cp0376/cpj0039 cpn0039 or cp0736 or cpj0039 SWALL:Y039_CHLPN (SWALL:Q9Z9E2) (96 aa) fasta scores: E(): 1e-29, 83.33% id in 96 aa, and to Rhizobium loti hypothetical upf0133 protein Mlr5504 mlr5504 SWALL:YJA4_RHILO (SWALL:Q98BM7) (107 aa) fasta scores: E(): 4.1e-05, 30.33% id in 89 aa conserved hypothetical protein	UPF0133 protein BQ02190	conserved hypothetical protein	Ortholog of S. aureus MRSA252 (BX571856) SAR0478 conserved hypothetical protein	conserved hypothetical protein	identified by similarity to OMNI:NTL01LI2832; match to protein family HMM PF02575; match to protein family HMM TIGR00103 conserved hypothetical protein TIGR00103	Uncharacterized BCR Hypothetical protein	conserved hypothetical protein	similar to unknown protein	identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 conserved hypothetical protein TIGR00103	Similar to Bacillus subtilis hypothetical protein YaaK SW:YAAK_BACSU (P24281) (107 aa) fasta scores: E(): 1.9e-22, 66.981% id in 106 aa, and to Bacillus halodurans hypothetical protein BH0035 SW:Y035_BACHD (Q9JWQ5) (103 aa) fasta scores: E(): 1.2e-20, 64.000% id in 100 aa conserved hypothetical protein	Conserved hypothetical protein 103	Conserved hypothetical protein	identified by similarity to EGAD:19844; match to protein family HMM PF02575; match to protein family HMM TIGR00103 conserved hypothetical protein TIGR00103	similar to gi|57285546|gb|AAW37640.1| [Staphylococcus aureus subsp. aureus COL], percent identity 91 in 105 aa, BLASTP E(): 1e-49 conserved hypothetical protein	identified by similarity to SP:P24281; match to protein family HMM PF02575; match to protein family HMM TIGR00103 conserved hypothetical protein TIGR00103	Putative uncharacterized protein	conserved hypothetical protein	conserved hypothetical protein identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103	
CHLTR00343	Phosphoenolpyruvate-protein phosphotransferase	PEP-utilizing enzyme	Phosphoenolpyruvate-protein phosphotransferase	PtsA	phosphoenolpyruvate protein phosphotransferase	phosphoenolpyruvate-protein phosphotransferase PtsP	conserved gene phosphoenolpyruvate protein phosphotransferase PtsP	phosphoenolpyruvate-protein phosphotransferase PtsP	Phosphoenolpyruvate--protein phosphatase	identified by similarity to SP:P08838; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 phosphoenolpyruvate-protein phosphotransferase	Phosphoenolpyruvate-protein phosphotransferase	phosphoenolpyruvate:sugar phosphotransferase system enzyme I	Phosphotransferase system enzyme I	Phosphoenolpyruvate-protein phosphotransferase	PHOSPHOENOLPYRUVATE-PROTEIN PHOSPHOTRANSFERASE	InterProMatches:IPR006318; general energy coupling protein of the PTS transfers phosphate from PEP to HPr,Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772) phosphotransferase system (PTS) enzyme I	PTS system, enzyme I, phosphoenolpyruvate-protein phosphotransferase	Phosphoenolpyruvate-protein phosphotransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark multiphosphoryl transfer protein	p-enolpyruvate-protein p-transferase PTSI	Phosphoenolpyruvate-protein phosphotransferase	Similar to Mycoplasma genitalium phosphoenolpyruvate-protein phosphotransferase PtsI or mg429 SWALL:PT1_MYCGE (SWALL:P47668) (572 aa) fasta scores: E(): 2.1e-25, 28.47% id in 569 aa and to Streptomyces coelicolor phosphoenolpyruvate-protein phosphotransferase PtsI or sco1391 or sc1a8a.11 SWALL:Q9KZP1 (EMBL:AL939108) (556 aa) fasta scores: E(): 4.4e-37, 29.18% id in 562 aa putative phosphoenolpyruvate-protein phosphotransferase	Phosphoenolpyruvate:sugar phosphotransferase system enzyme I	phosphoenolpyruvate-protein phosphatase	identified by match to PFAM protein family HMM PF00391 phosphoenolpyruvate-protein phosphotransferase	Phosphoenolpyruvate-protein phosphotransferase	Ortholog of S. aureus MRSA252 (BX571856) SAR1057 phosphoenolpyruvate-protein phosphotransferase	Phosphoenolpyruvate-protein phosphatase	phosphoenolpyruvate-protein phosphatase	
CHLTR00344	Phosphocarrier protein HPr	identified by similarity to EGAD:6430; match to protein family HMM PF00381; match to protein family HMM TIGR01003 phosphocarrier protein HPr	Phosphocarrier protein HPr	Phophocarrier protein HPR	InterProMatches:IPR002114, IPR001020; transfers phosphate from enzyme I to specific enzymes II/III permeases mediates carbon catabolite repression (CCR), Molecular Function: sugar porter activity (GO:0005351), Biological Process: phosphoenolpyruvate-dependent sugar phosphotransferase system (GO:0009401) histidine-containing phosphocarrier protein of the phosphotransferase system (PTS) (HPr protein)	PTS system, histidine-containing phosphocarrier protein HPr	Similar to Chlamydia pneumoniae phosphocarrier protein Hpr PtsH or cpn0037 or cp0738 SWALL:PTHP_CHLPN (SWALL:Q9Z9E4) (108 aa) fasta scores: E(): 4.2e-24, 66.66% id in 99 aa, and to Bacillus subtilis phosphocarrier protein Hpr PtsH SWALL:PTHP_BACSU (SWALL:P08877) (87 aa) fasta scores: E(): 3.1e-06, 39.5% id in 81 aa putative Phosphotransferase system, phosphocarrier protein	Phosphocarrier protein	phophocarrier protein HPR (phosphohistidin-containing protein)	Ortholog of S. aureus MRSA252 (BX571856) SAR1056 histidine-containing phosphocarrier protein (HPr)	phophocarrier protein HPR, phosphohistidin-containing protein	Phosphocarrier protein HPr	phosphocarrier protein HPr	Previously sequenced as Staphylococcus aureus histidine-containing phosphocarrier protein (HPr) PtsH SW:PTHP_STAAU (P02907) (88 aa) fasta scores: E(): 8.1e-31, 100.000% id in 88 aa. Similar to Staphylococcus carnosus histidine-containing phosphocarrier protein PtsH SW:PTHP_STACA (P23534) (88 aa) fasta scores: E(): 3.5e-29, 94.318% id in 88 aa histidine-containing phosphocarrier protein (HPr)	identified by similarity to OMNI:SA1091; match to protein family HMM PF00381; match to protein family HMM TIGR01003 phosphocarrier protein HPr	Phosphocarrier protein HPr	phosphocarrier protein HPr identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003	histidine-containing phosphocarrier protein	HPrNtr	phosphotransferase system histidine-containing protein HPr	HPrNtr	Phosphocarrier, HPr family	Phosphocarrier protein HPr	Phosphotransferase system, HPr	phosphocarrier protein hpr, putative	Putative phosphocarrier protein	Phosphotransferase system, phosphocarrier protein HPr TIGRFAM: phosphocarrier, HPr family PFAM: phosphocarrier HPr protein KEGG: plt:Plut_0167 HPrNtr	Phosphotransferase system, phosphocarrier protein HPr TIGRFAM: phosphocarrier, HPr family PFAM: phosphocarrier HPr protein KEGG: pol:Bpro_0298 HPrNtr	Phosphotransferase system, phosphocarrier protein HPr	
CHLTR00345	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00346	Putative uncharacterized protein	conserved hypothetical protein	COME operon protein 3	DNA uptake protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00346	Putative uncharacterized protein	conserved hypothetical protein	COME operon protein 3	DNA uptake protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00347	(Pyruvate) Oxoisovalerate Dehydrogenase Alpha/Beta Fusion	dehydrogenase/transketolase family protein	Similar to over the whole range to Chlamydophila caviae 2-oxoisovalerate dehydrogenase, e1 component, alpha and beta subunit pdha/pdhb or cca00324 SWALL:Q823T1 (EMBL:AE016995) (678 aa) fasta scores: E(): 0, 92.77% id in 678 aa. Also similar in parts to many including Bacillus subtilis 2-oxoisovalerate dehydrogenase beta subunit SWALL:ODBB_BACSU (SWALL:P37941) (327 aa) fasta scores: E(): 1.2e-53, 47.07% id in 325 aa putative oxidoreductase	2-oxoisovalerate dehydrogenase, E1 component, alpha and beta subunit identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM PF02780	putative dehydrogenase, fusion CDS is a fusion protein of which the C-terminus from codon 456 is similar to Sulfolobus solfataricus pyruvate dehydrogenase, beta subunit PdhB-2 or sso1526 SWALL:Q97Y22 (EMBL:AE006767) (324 aa), and the N-terminus to codon 456 is similar to Chlamydia pneumoniae pyruvate PdhA/PdhB or PdhA_PdhB or cpn0033 or cp0743 or cpb0037 SWALL:Q9Z9E8 (EMBL:AE001588) (678 aa) similarity:fasta; SWALL:Q97Y22 (EMBL:AE006767); Sulfolobus solfataricus; pyruvate dehydrogenase, beta subunit; pdhb-2 or sso1526; length 324 aa; 329 aa overlap; query 455-780 aa; subject 1-323 aa similarity:fasta; SWALL:Q9Z9E8 (EMBL:AE001588); Chlamydia pneumoniae; pyruvate; pdha/pdhb or pdha_pdhb or cpn0033 or cp0743 or cpb0037; length 678 aa; 653 aa overlap; query 155-778 aa; subject 70-674 aa	oxoisovalerate dehydrogenase alpha-beta fusion EC 1.2.4.4	dehydrogenase, E1 component	dehydrogenase, E1 component PFAM: dehydrogenase, E1 component; Transketolase, central region; Transketolase domain protein KEGG: aba:Acid345_1786 dehydrogenase, E1 component	2-oxoisovalerate dehydrogenase alpha subunit 2-oxoisovalerate dehydrogenase beta subunit	Dehydrogenase, E1 component	Putative acetoin dehydrogenase, alpha/beta subunit	Probable pyruvate dehydrogenase (Acetyl- transferring) beta subunit	Transketolase domain protein	Hypothetical protein, conserved	Transketolase domain protein	Transketolase domain protein	Transketolase, central region	Transketolase central region	Dehydrogenase E1 component	Dehydrogenase E1 component	2-oxoisovalerate dehydrogenase alpha subunit	Dehydrogenase E1 component	2-oxoisovalerate dehydrogenase alpha subunit	Dehydrogenase E1 component	Pyruvate dehydrogenase E1 component, beta subunit	Transketolase central region	Putative pyruvate dehydrogenase, E1 component	Transketolase central region	Putative acetoin dehydrogenase E1 component	
CHLTR00348	Chaperone protein dnaJ	Chaperone protein dnaJ	Chaperone protein dnaJ	chaperone protein DnaJ (heat shock protein)	conserved gene heat shock protein DnaJ, chaperone protein	chaperone protein DnaJ (heat shock protein)	chaperone protein DnaJ	Chaperone protein dnaJ	Chaperone protein dnaJ	Chaperone protein dnaJ	Chaperone protein dnaJ	identified by similarity to SP:P42381; match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556 co-chaperone protein DnaJ	InterProMatches:IPR001305, IPR001623; activation of DnaK,Molecular Function: chaperone activity (GO:0003754), Biological Process: protein folding (GO:0006457) heat-shock protein	molecular chaperone DnaJ	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark DnaJ	IPR000345: Cytochrome c heme-binding site; IPR001305: DnaJ central domain (CXXCXGXG); IPR001623: Heat shock protein DnaJ, N-terminal;IPR003095: Heat shock protein DnaJ heat shock protein, DnaJ and GrpE stimulates ATPase activity of DnaK	similar to Salmonella typhi CT18 DnaJ protein DnaJ protein	Similar to Escherichia coli chaperone protein DNAJ SWALL:DNAJ_ECOLI (SWALL:P08622) (375 aa) fasta scores: E(): 2.6e-42, 47.08% id in 395 aa and to Rhodobacter capsulatus chaperone protein DnaJ SWALL:DNAJ_RHOCA (SWALL:Q52702) (384 aa) fasta scores: E(): 4.7e-52, 42.38% id in 394 aa molecular chaperone protein	Chaperone protein dnaJ	Chaperone protein dnaJ	Chaperone protein dnaJ	DnaJ protein	Chaperone protein dnaJ	identified by match to PFAM protein family HMM PF00226 dnaJ protein	Ortholog of S. aureus MRSA252 (BX571856) SAR1656 chaperone protein	Chaperone protein dnaJ	DnaJ protein	Chaperone protein dnaJ	DnaJ protein	
CHLTR00349	30S ribosomal protein S21	SSU ribosomal protein S21P	30S ribosomal protein S21	30S ribosomal protein S21	30S ribosomal protein S21	Highly similar to many including: Pseudomonas aeruginosa 30s ribosomal protein s21 RpsU or pa0579 SWALL:RS21_PSEAE (SWALL:Q9I5V8) (71 aa) fasta scores: E(): 1.3e-05, 39.65% id in 58 aa and Chlamydia pneumoniae 30s ribosomal protein s21 RpsU SWALL:RS21_CHLPN (SWALL:Q9Z9F0) (58 aa) fasta scores: E(): 2.4e-19, 96.55% id in 58 aa 30s ribosomal protein s21	30S ribosomal protein S21	30S ribosomal protein S21	identified by match to PFAM protein family HMM PF01165 ribosomal protein S21	30S ribosomal protein S21	best blastp match gb|AAK33719.1| (AE006529) 30S ribosomal protein S21 [Streptococcus pyogenes M1 GAS] 30S ribosomal protein S21	identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030 ribosomal protein S21	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type s : structure 30S ribosomal protein S21	30S ribosomal protein S21	30S ribosomal protein S21	30S ribosomal protein S21	Ribosomal protein S21	identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030 ribosomal protein S21	identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030 ribosomal protein S21	Ribosomal protein S21	Ribosomal protein S21	identified by similarity to SP:P21478; match to protein family HMM PF01165; match to protein family HMM TIGR00030 ribosomal protein S21	SSU ribosomal protein S21P	30S ribosomal protein S21	ribosomal protein S21	30S ribosomal protein S21	ribosomal protein S21	ribosomal protein S21	SSU ribosomal protein S21P	
CHLTR00350	O-Sialoglycoprotein Endopeptidase family	o-sialoglycoprotein endopeptidase EC 3.4.24.57	O-sialoglycoprotein endopeptidase	O-sialoglycoprotein endopeptidase	O-sialoglycoprotein endopeptidase	O-sialoglycoprotein endopeptidase	
CHLTR00351	ATP-dependent protease La	identified by similarity to SP:P37945; match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763 ATP-dependent protease La	Similar to many Prokaryotic and Eukaryotic serine proteases including: Chlamydia pneumoniae ATP-dependent protease Lon or cpn0027 or cp0749 SWALL:LON_CHLPN (SWALL:Q9Z9F4) (819 aa) fasta scores: E(): 0, 91.44% id in 818 aa, Homo sapiens Lon protease homolog, mitochondrial precursor prss15 SWALL:LONM_HUMAN (SWALL:P36776) (959 aa) fasta scores: E(): 4.8e-114, 45.43% id in 843 aa and Bacillus subtilis ATP-dependent protease LonA or loN SWALL:LON1_BACSU (SWALL:P37945) (774 aa) fasta scores: E(): 2.5e-93, 39.43% id in 781 aa putative serine protease	ATP-dependent protease LA	Similar to Escherichia coli, and Escherichia coli O6 ATP-dependent protease La Lon or CapR or Deg or Muc or LopA or B0439 or C0555 SWALL:LON_ECOLI (SWALL:P08177) (784 aa) fasta scores: E(): 7.1e-115, 45.05% id in 768 aa, and to Bacteroides thetaiotaomicron ATP-dependent protease BTt0837 SWALL:AAO75944 (EMBL:AE016929) (626 aa) fasta scores: E(): 1.4e-180, 85.59% id in 618 aa ATP-dependent protease	ATP-dependent protease La	identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763 ATP-dependent protease La	identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763 ATP-dependent protease La	Peptidase S16, ATP-dependent protease La	ATP-dependent protease La	peptidase S16, ATP-dependent protease La	lon peptidase 1, mitochondrial [Source:HGNC Symbol;Acc:9479]	ATP-dependent protease La	Peptidase S16, ATP-dependent protease La	ATP-dependent protease La TIGRFAMsMatches:TIGR00763	lon/ATP-dependent protease La EC 3.4.21.53	transcript_id=ENSGACT00000002620	ATP-dependent protease La	ATP-dependent protease LA	transcript_id=ENSFCAT00000011842	Endopeptidase La inner membrane protein	Endopeptidase La inner membrane protein	ATP-dependent protease La identified by match to protein family HMM PF00004; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763	ATP-dependent protease La KEGG: hch:HCH_01256 ATP-dependent protease La TIGRFAM: ATP-dependent protease La PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5 SMART: AAA ATPase	ATP-dependent protease La KEGG: tbd:Tbd_1252 peptidase S16, ATP-dependent protease La TIGRFAM: ATP-dependent protease La PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5 SMART: AAA ATPase	Lon protease homolog, mitochondrial Precursor (EC 3.4.21.-)(Lon protease-like protein)(LONP)(LONHs)(Mitochondrial ATP-dependent protease Lon)(Serine protease 15) [Source:UniProtKB/Swiss- Prot;Acc:P36776]	ATP-dependent protease La	ATP-dependent protease La	
CHLTR00352	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00353	Ribonuclease Z	Ribonuclease Z	Ribonuclease Z	identified by match to protein family HMM PF00753 AtsA/ElaC family protein	Metal-dependent hydrolase	hypothetical protein YCF56	metallo-beta-lactamase superfamily protein	Ribonuclease Z	Ribonuclease Z	RNase Z responsible for the maturation of the 3' end of tRNA	ribonuclease Z	putative metallo-beta-lactamase superfamily	Ribonuclease Z	putative metal-dependent hydrolase	similar to Salmonella typhi CT18 putative hydrolase putative hydrolase	Similar to Escherichia coli, and Shigella flexneriprotein hypothetical protein ElaC SWALL:ELAC_ECOLI (SWALL:Q47012) (305 aa) fasta scores: E(): 3.4e-25, 33.77% id in 305 aa and to Streptomyces coelicolor putativehydorlase sco2547 or scc77.14C SWALL:Q9RDE4(EMBL:AL939113) (301 aa) fasta scores: E(): 4.2e-49, 43.23% id in 303 aa putative hydrolase	Ribonuclease Z	conserved hypothetical protein	identified by match to PFAM protein family HMM PF00753 metallo-beta-lactamase superfamily protein	Ortholog of S. aureus MRSA252 (BX571856) SAR1581 conserved hypothetical protein	Ribonuclease Z	conserved hypothetical protein	Ribonuclease Z	conserved hypothetical protein	best blastp match gb|AAK33839.1| (AE006541) conserved hypothetical protein [Streptococcus pyogenes M1 GAS] conserved hypothetical protein	metallo-beta-lactamase superfamily protein	identified by match to protein family HMM PF00753 metallo-beta-lactamase family protein	Conserved hypothetical protein	Similar to Escherichia coli, and Shigella flexneri protein ElaC or B2268 or SF2347 or s2481 SWALL:ELAC_ECOLI (SWALL:Q47012) (305 aa) fasta scores: E(): 1.6e-25, 32.22% id in 301 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein, with a metallo-beta-lactamase superfamily domain BT4346 SWALL:AAO79451 (EMBL:AE016944) (316 aa) fasta scores: E(): 1.4e-110, 82.56% id in 304 aa, and to Porphyromonas gingivalis hypothetical 33.6 kDa protein in RnhB-PgaA intergenic region SWALL:YPGA_PORGI (SWALL:Q51834) (297 aa) fasta scores: E(): 8.3e-71, 57.49% id in 287 aa conserved hypothetical protein	
CHLTR00354	Tyrosine recombinase xerC	Integrase-recombinase protein	Similar to many integrase/recombinases including: Escherichia coli, and Escherichia coli O6 integrase/recombinase XerD SWALL:XERD_ECOLI (SWALL:P21891) (298 aa) fasta scores: E(): 1.2e-28, 33.22% id in 307 aa and Pirellula sp integrase/recombinase SWALL:CAD74556 (EMBL:BX294143) (300 aa) fasta scores: E(): 5.1e-35, 36.7% id in 316 aa putative integrase/recombinase	Phage integrase	site-specific recombinase, phage integrase family identified by match to protein family HMM PF00589; match to protein family HMM PF02899	site-specific recombinase, phage integrase family identified by match to protein family HMM PF00589; match to protein family HMM PF02899	phage integrase	phage integrase	Phage integrase	phage integrase PFAM: phage integrase: (7.6e-29) KEGG: mta:Moth_1501 tyrosine recombinase XerD, ev=2e-25, 30% identity	integrase/recombinase	phage integrase	Tyrosine recombinase xerC	Phage integrase	putative transcriptional regulator, Fis family	Tyrosine site-specific recombinase XerC cytoplasmic protein	Tyrosine site-specific recombinase XerC cytoplasmic protein	DNA integration/recombination/inversion protein	Site-specific tyrosine recombinase	Integrase/recombinase	Tyrosine recombinase XerC	Phage integrase family protein	Tyrosine recombinase XerC	CodV	tyrosine recombinase XerC subunit TIGRFAM: tyrosine recombinase XerC PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein KEGG: mmc:Mmcs_1990 tyrosine recombinase XerC	Integrase/recombinase, XerD-like protein	Integrase family protein	Integrase family protein	Integrase family protein	
CHLTR00355	ABC Transporter Protein ATPase	Hypothetical ABC transporter ATP-binding protein YbiT	ABC transporter, ATP-binding protein	identified by match to protein family HMM PF00005 ABC transporter, ATP-binding protein	ABC transporter ATP-binding protein	Probable ABC transporter ATP-binding protein	ABC transporter ATP-binding protein	ABC transporter	Molecular Function: ATP-binding cassette (ABC) transporter activity (GO:0004009), Molecular Function: ATP binding (GO:0005524), Biological Process: transport (GO:0006810), Cellular Component: membrane (GO:0016020), Molecular Function: ATP-binding cassette ABC transporter,ABC transporter	ABC transporter ATP-binding protein	IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter putative ATPase component of ABC transporter with duplicated ATPase domain	similar to Salmonella typhi CT18 ABC transporter ATP-binding protein ABC transporter ATP-binding protein	Similar to many proposed ABC transporter, ATP-binding proteins including: Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical YbiT or ecs0897 SWALL:YBIT_ECOLI (SWALL:P75790) (530 aa) fasta scores: E(): 1e-70, 42.91% id in 529 aa and Leptospira interrogans ABC transporter, ATP-binding protein La3684 SWALL:Q8F013 (EMBL:AE011523) (544 aa) fasta scores: E(): 4.9e-71, 44.98% id in 518 aa.  Note the alternative translational start site at codon 5 putative ABC transporter, ATP-binding component	Putative uncharacterized protein gbs2130	ABC transporter (ATP-binding protein) homolog	identified by match to PFAM protein family HMM PF00005 ABC transporter, ATP-binding protein	Putative ABC-transporter ATP-binding protein	Ortholog of S. aureus MRSA252 (BX571856) SAR1404 ABC transporter ATP-binding protein	ABC transporter, ATP-binding protein	ABC transporter (ATP-binding protein) homolog	ABC transporter, ATP-binding protein	identified by match to protein family HMM PF00005 ABC transporter, ATP-binding protein	ABC transporter ATP-binding protein	Similar to Bacillus subtilis ABC transporter YkpA protein SWALL:O31716 (EMBL:Z99111) (540 aa) fasta scores: E(): 5.4e-119, 58.44% id in 539 aa, and to Bacteroides thetaiotaomicron ABC transporter ATP-binding protein BT1242 SWALL:Q8A8C5 (EMBL:AE016931) (539 aa) fasta scores: E(): 1.9e-188, 96.82% id in 536 aa, and to Porphyromonas gingivalis W83 ABC transporter, ATP-binding protein PG2206 SWALL:AAQ67147 (EMBL:AE017179) (538 aa) fasta scores: E(): 1.4e-153, 78.02% id in 537 aa putative ABC transporter component	ABC transporter, ATP-binding protein	ATPase component of ABC transporters with duplicated ATPase domains	ABC transporter, drug resistance ATPase-2 (Drug RA2) family, ATP binding protein	Putative ATPase component of ABC transporter with duplicated ATPase domain	putative ATP-binding ABC transporter protein	
CHLTR00356	Maf-like protein CT_349	hypothetical protein	Maf-like protein Pro_1257	identified by similarity to SP:Q02169; match to protein family HMM PF02545; match to protein family HMM TIGR00172 maf protein, putative	Maf-like protein Rv3282/MT3381	Mb3310, -, len: 222 aa. Equivalent to Rv3282, len: 222 aa, from Mycobacterium tuberculosis strain H37Rv, (99.5% identity in 222 aa overlap). Conserved hypothetical protein, equivalent to Q49670|ML0729 1308R (HYPOTHETICAL PROTEIN ML0729) from Mycobacterium leprae (213 aa), FASTA scores: opt: 945, E(): 5.5e-54, (68.55% identity in 213 aa overlap). Also similar to Q9EWV6|2SCK31.18 CONSERVED HYPOTHETICAL PROTEIN from Streptomyces coelicolor (206 aa), FASTA scores: opt: 459, E(): 1.3e-22, (47.35% identity in 209 aa overlap); P74331|MAF OR SLL0905 MAF PROTEIN from Synechocystis sp. strain PCC 6803 (195 aa), FASTA scores: opt: 401, E(): 6.9e-19, (43.0% identity in 207 aa overlap); and shows weak similarity with various proteins e.g. Q9BUL6 ACETYLSEROTONIN O-METHYLTRANSFERASE-LIKE from Homo sapiens (Human) (621 aa), FASTA scores: opt: 282, E(): 8.9e-11, (31.6% identity in 193 aa overlap); O95671|ASMTL ASMTL PROTEIN from Homo sapiens (Human) (629 aa), FASTA scores: opt: 282, E(): 9e-11, (31.6% identity in 193 aa overlap); BAB51136|MLR4491 MAF PROTEIN from Rhizobium loti (Mesorhizobium loti) (199 aa), FASTA scores: opt: 269, E(): 2.3e-10, (29.3% identity in 198 aa overlap); etc. CONSERVED HYPOTHETICAL PROTEIN	InterProMatches:IPR003697; septum formation Maf	Maf-like protein TTHA1188	Nucleotide-binding protein implicated in inhibition of septum formation	Similar to many Maf and Maf-like proteins: Bacillus halodurans septum formation protein Maf or bh3033 SWALL:MAF_BACHD (SWALL:Q9K8H3) (190 aa) fasta scores: E(): 1.7e-19, 41.08% id in 185 aa and to Chlamydia trachomatis Maf-like protein Ct349 ct349 SWALL:Y349_CHLTR (SWALL:O84353) (196 aa) fasta scores: E(): 2.1e-41, 53.57% id in 196 aa conserved hypothetical protein	Maf-like protein BQ11190	Hypothetical protein	Maf-like protein	, predicted protein, len = 222 aa, unknown protein; predicted pI = 5.4089 hypothetical protein, conserved	ASMTL	Septum formation inhibitor	conserved hypothetical protein	identified by similarity to SP:Q02169; match to protein family HMM TIGR00172 septum formation protein MaF	Maf-like protein PMN2A_0769	maf-like protein	Maf-like protein	Inhibitor of septum formation (Maf protein)	Maf protein	maf protein	septum formation protein MaF identified by match to protein family HMM PF02545; match to protein family HMM TIGR00172	maf protein	septum formation protein MaF identified by match to protein family HMM PF02545; match to protein family HMM TIGR00172	
CHLTR00357	Putative uncharacterized protein	outer membrane protein	hypothetical protein	Putative lipoprotein precursor	Putative lipoprotein precursor	Putative lipoprotein	
CHLTR00358	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	

CHLTR00360	Peptide deformylase	Peptide deformylase 2	Peptide deformylase	Peptide deformylase 1	Peptide deformylase	similar to polypeptide deformylase hypothetical protein	Peptide deformylase	Peptide deformylase	polypeptide deformylase	Peptide deformylase	polypeptide deformylase	Peptide deformylase	Peptide deformylase	identified by similarity to SP:P94462; match to protein family HMM PF01327; match to protein family HMM TIGR00079 peptide deformylase	Peptide deformylase	peptide deformylase	Peptide deformylase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark polypeptide deformylase	COG0242 N-formylmethionyl-tRNA deformylase polypeptide deformylase Pdf	Peptide deformylase	IPR000181: Formylmethionine deformylase peptide deformylase	N-formylmethionyl-tRNA deformylase	similar to Salmonella typhi Ty2 polypeptide deformylase polypeptide deformylase	Similar to Chlamydia pneumoniae peptide deformylase def or cpn1067 or cp0783 SWALL:DEF_CHLPN (SWALL:Q9Z6J2) (186 aa) fasta scores: E(): 1e-48, 70% id in 180 aa, and to Thermus thermophilus peptide DeFormylase def SWALL:DEF_THETH (SWALL:P43522) (192 aa) fasta scores: E(): 6.7e-18, 41.81% id in 165 aa peptide deformylase	similar to BRA1035, polypeptide deformylase Def-2, polypeptide deformylase	Peptide deformylase	formylmethionine deformylase homolog	Peptide deformylase	identified by match to PFAM protein family HMM PF01327 polypeptide deformylase	
CHLTR00361	Ribosomal RNA small subunit methyltransferase A	Ribosomal RNA small subunit methyltransferase A	Ribosomal RNA small subunit methyltransferase A	Ribosomal RNA small subunit methyltransferase A	Dimethyladenosine transferase	dimethyladenosine transferase	Ribosomal RNA small subunit methyltransferase A	Ribosomal RNA small subunit methyltransferase A	similar to dimethyladenosine transferase (16S rRNA dimethylase) hypothetical protein	conserved gene dimethyladenosine transferase	similar to dimethyladenosine transferase (16S rRNA dimethylase) hypothetical protein	Ribosomal RNA small subunit methyltransferase A	identified by similarity to EGAD:18456; match to protein family HMM PF00398; match to protein family HMM TIGR00755 dimethyladenosine transferase	Ribosomal RNA small subunit methyltransferase A	Dimethyladenosine transferase	dimethyladenosine transferase	identified by match to protein family HMM PF00398; match to protein family HMM TIGR00755 dimethyladenosine transferase	Ribosomal RNA small subunit methyltransferase A	dimethyladenosine transferase (rRNA methylation)	Ribosomal RNA small subunit methyltransferase A	Dimethyladenosine transferase	Dimethyladenosine transferase	Ribosomal RNA small subunit methyltransferase A	identified by similarity to SP:P37468; match to protein family HMM PF00398; match to protein family HMM TIGR00755 dimethyladenosine transferase	Ribosomal RNA small subunit methyltransferase A	Dimethyladenosine transferase	Dimethyladenosine transferase	Mb1037, ksgA, len: 317 aa. Equivalent to Rv1010, len: 317 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 317 aa overlap). Probable ksgA, dimethyladenosine transferase (EC 2.1.1.-), similar to many e.g. KSGA_BACSU|P37468 dimethyladenosine transferase from Bacillus subtilus (292 aa), FASTA scores: opt: 524, E(): 1.5e-28, (37.2% identity in 274 aa overlap); similar to Mycobacterium tuberculosis hypothetical protein Rv1988.  Contains PS01131 Ribosomal RNA adenine dimethylases signature. PROBABLE DIMETHYLADENOSINE TRANSFERASE KSGA (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase)	InterProMatches:IPR001737; high level kasugamycin resistance, Molecular Function: rRNA (adenine-N6,N6-)-dimethyltransferase activity (GO:0000179) dimethyladenosine transferase	
CHLTR00362	Uncharacterized protein CT_355	hypothetical protein	hypothetical protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	

CHLTR00363	Multidomain protein family	Putative uncharacterized protein	Putative uncharacterized protein	Mb1113, -, len: 673 aa. Equivalent to Rv1084, len: 673 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 673 aa overlap). Conserved hypothetical protein, similar to P37512|YYAL_BACSU hypothetical protein from Bacillus subtilis (689 aa), FASTA scores: opt: 1063, E(): 0, (36.5% identity in 696 aa overlap); AE0009|AE000983_10 Archaeoglobus fulgidus section 1 (642 aa), FASTA scores: opt: 1018, E(): 0, (37.2% identity in 600 aa overlap). Also similar to AE001938|AE001938_9 Deinococcus radiodurans (690 aa), FASTA scores: opt: 1097, E(): 0, (41.6% identity in 694 aa overlap). CONSERVED HYPOTHETICAL PROTEIN	similar to Clostridium sp. thymidylate kinase conserved protein YyaL	Putative uncharacterized protein TTHA0986	Similar to many proteins of undefined function including: Chlamydia pneumoniae ct356 hypothetical protein cpn1057 or cpj1057 or cp0793 SWALL:Q9Z6K2 (EMBL:AE001686) (700 aa) fasta scores: E(): 3.7e-200, 65.23% id in 699 aa, and to Aquifex aeolicus hypothetical protein Aq_2146 aq_2146 SWALL:O67902 (EMBL:AE000775) (692 aa) fasta scores: E(): 9.8e-69, 32.45% id in 684 aa, and to Methanosarcina mazei conserved protein mm0619 SWALL:AAM30315 (EMBL:AE013287) (700 aa) fasta scores: E(): 2e-65, 32.69% id in 682 aa conserved hypothetical protein	similar to BR2063, conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	DUF255 domain protein	Highly conserved protein containing a thioredoxin domain	conserved hypothetical protein	Protein of unknown function DUF255	conserved hypothetical protein	Protein of unknown function DUF255	identified by similarity to OMNI:NTL01CA3484; match to protein family HMM PF03190 conserved hypothetical protein	conserved hypothetical protein	Protein of unknown function DUF255	Conserved thioredoxin domain protein	conserved hypothetical protein identified by similarity to PIR:AB1961; match to protein family HMM PF03190	protein of unknown function DUF255	Protein of unknown function DUF255	conserved hypothetical protein	spermatogenesis associated 20 [Source:HGNC Symbol;Acc:26125]	Protein of unknown function, DUF255 family identified by match to protein family HMM PF03190	conserved hypothetical protein identified by similarity to PIR:AB1961; match to protein family HMM PF03190	Protein of unknown function DUF255	transcript_id=ENSOCUT00000002727	

CHLTR00365	Putative uncharacterized protein	Candidate inclusion membrane protein	Candidate inclusion membrane protein	
CHLTR00366	Putative uncharacterized protein	pseudo	pseudo	
CHLTR00367	Putative uncharacterized protein	identified by match to protein family HMM PF02632 bioY family protein	biotin synthase	Biotin biosynthesis protein BioY	Uncharacterized conserved protein	Similar to Chlamydophila caviae hypothetical protein cca00706 SWALL:Q822H6 (EMBL:AE016996) (199 aa) fasta scores: E(): 8.6e-45, 63.26% id in 196 aa. Also similar to several BioY-family proteins including: Chlamydia muridarum SWALL:Q9PK35 (EMBL:AE002332)(196 aa) fasta scores: E()=8.4e-30, 50%i d in 180 aa. putative transmembrane protein	identified by match to protein family HMM PF02632 BioY family protein	Putative Biotin synthase	biotin synthase	BioY family (Pfam) probable biotin synthase	Putative uncharacterized protein	BioY family protein	BioY family protein	Putative biotin synthesis protein	biotin synthesis BioY protein	BioY family protein	BioY family protein identified by match to protein family HMM PF02632	BioY-family membrane protein	BioY family protein identified by match to protein family HMM PF02632	conserved hypothetical protein COG1268, pfam02632	BioY family protein	BioY protein PFAM: BioY protein: (1.4e-37) KEGG: ttj:TTHA0904 biotin biosynthesis protein BioY, ev=2e-42, 53% identity	biotin synthase EC 2.8.1.6	BioY protein	BioY protein	BioY protein PFAM: BioY protein KEGG: mba:Mbar_A0586 biotin synthesis BioY protein	biotin synthesis protein	uncharacterized conserved protein	BioY protein	
CHLTR00368	Putative uncharacterized protein	Putative exported protein precursor	Putative exported protein precursor	
CHLTR00368	Putative uncharacterized protein	Putative exported protein precursor	Putative exported protein precursor	
CHLTR00369	Dihydrodipicolinate synthase	Probable dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase, DapA	Similar to Staphylococcus aureus dihydrodipicolinate synthase DapA or mw1283 SWALL:DAPA_STAAW (SWALL:Q8NWS5) (295 aa) fasta scores: E(): 2.1e-17, 29.74% id in 269 aa, and to Chlamydophila caviae dihydrodipicolinate synthase DapA or cca00712 SWALL:Q822H0 (EMBL:AE016996) (289 aa) fasta scores: E(): 3.2e-78, 66.54% id in 281 aa, and to Xanthomonas campestris dihydrodipicolinate synthase DapA or xcc1741 SWALL:DAPA_XANCP (SWALL:Q8P9V6) (302 aa) fasta scores: E(): 4.3e-19, 31.71% id in 268 aa putative dihydrodipicolinate synthase	dihydrodipicolinate synthase	Similar to Bacillus subtilis dihydrodipicolinate synthase DapA or BSU16770 SWALL:DAPA_BACSU (SWALL:Q04796) (290 aa) fasta scores: E(): 7.9e-45, 45.96% id in 285 aa, and to Porphyromonas gingivalis W83 dihydrodipicolinate synthase DapA or PG2052 SWALL:AAQ67015 (EMBL:AE017179) (289 aa) fasta scores: E(): 6.9e-51, 51.04% id in 286 aa, and to Escherichia coli, and Shigella flexneri dihydrodipicolinate synthase DapA or B2478 or SF2521 or S2671 SWALL:DAPA_ECOLI (SWALL:P05640) (292 aa) fasta scores: E(): 4.6e-36, 39.86% id in 286 aa putative dihydrodipicolinate synthase	Dihydrodipicolinate synthase, putative	dihydrodipicolinate synthetase family protein	identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674 dihydrodipicolinate synthase	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; PubMedId : 8021219; Product type e : enzyme putative dihydrodipicolinate synthase	putative dihydrodipicolinate synthase identified by match to protein family HMM PF00701	putative dihydrodipicolinate synthase similarity:fasta; with=UniProt:DAPA_ECOLI (EMBL:AE015267); Shigella flexneri.; dapA; Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS).; length=292; id 35.915; 284 aa overlap; query 11-291; subject 4-286 similarity:fasta; with=UniProt:MOSA_RHIME (EMBL:RMMOSA); Rhizobium meliloti (Sinorhizobium meliloti).; mosA; MosA protein (EC 4.1.-.-).; length=333; id 42.759; 290 aa overlap; query 11-295; subject 4-293	dihydrodipicolinate synthase EC 4.2.1.52	Dihydrodipicolinate synthetase	Dihydrodipicolinate synthase	dihydrodipicolinate synthetase	dihydrodipicolinate synthase, putative identified by match to protein family HMM PF00701	dihydrodipicolinate synthase identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674	dihydrodipicolinate synthase TIGRFAM: dihydrodipicolinate synthase PFAM: dihydrodipicolinate synthetase KEGG: mmc:Mmcs_2116 dihydrodipicolinate synthase	dihydrodipicolinate synthase	dihydrodipicolinate synthase	dihydrodipicolinate synthase DapA cytoplasmic protein involved in biosynthesis of diaminopimelate and lysine from aspartate semialdehyde (at the first step) [catalytic activity: l-aspartate 4-semialdehyde + pyruvate = dihydrodipicolinate + 2 H(2)O]	Putative dihydrodipicolinate synthase	dihydrodipicolinate synthase	dihydrodipicolinate synthase	Putative dihydrodipicolinate synthase	Dihydrodipicolinate synthase	
CHLTR00370	Aspartokinase	Aspartokinase	Aspartokinase	Aspartokinase	Aspartokinase	Molecular Function: aspartate kinase activity (GO:0004072), Biological Process: amino acid biosynthesis (GO:0008652) Aspartate kinase	aspartate kinase aspartokinase	COG0527 Aspartokinases aspartokinase-homoserinedehydrogenase	Aspartokinase (EC 2.7.2.4) , homoserine dehydrogenase	IPR001341: Aspartate kinase aspartokinase III, lysine sensitive	similar to Salmonella typhi CT18 lysine-sensitive aspartokinase III lysine-sensitive aspartokinase III	Similar to Escherichia coli lysine-sensitive aspartokinase III LysC or Apk or b4024 SWALL:AK3_ECOLI (SWALL:P08660) (449 aa) fasta scores: E(): 9.3e-31, 34.38% id in 445 aa, and to Chlamydophila caviae aspartokinase III LysC or cca00713 SWALL:Q822G9 (EMBL:AE016996) (440 aa) fasta scores: E(): 7.6e-147, 82.04% id in 440 aa, and to Shewanella oneidensis aspartokinase III, lysine-sensitive LysC or so3986 SWALL:Q8EAC1 (EMBL:AE015829) (451 aa) fasta scores: E(): 5.4e-33, 34.81% id in 451 aa putative aspartokinase	Aspartokinase	Aspartokinase	Aspartate kinase	identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00657 aspartate kinase family protein	Evidence 2b : Function of strongly homologous gene; Product type e : enzyme aspartate kinase	aspartokinase	Similar to Vibrio parahaemolyticus aspartokinase III, lysine-sensitive VP2715 SWALL:BAC60979 (EMBL:AP005082) (450 aa) fasta scores: E(): 5.2e-43, 34.22% id in 447 aa, and to Escherichia coli lysine-sensitive aspartokinase III LysC or Apk or B4024 SWALL:AK3_ECOLI (SWALL:P08660) (449 aa) fasta scores: E(): 7.6e-32, 33.4% id in 449 aa putative aspartokinase III	Aspartokinases LysC protein	Aspartokinase III, lysine sensitive	Aspartokinase	putative aspartate kinase	identified by similarity to SP:P08660; match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00657 aspartokinase III, lysine-sensitive	lysine-sensitive aspartokinase III	aspartate kinase homolog	identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00656; match to protein family HMM TIGR00657 aspartate kinase, monofunctional class	Aspartate kinase region:Aspartate kinase, monofunctional class	Aspartokinase	
CHLTR00371	Aspartate semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	conserved gene aspartate semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296 aspartate-semialdehyde dehydrogenase	aspartate beta-semialdehyde dehydrogenese	identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296 aspartate-semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	Aspartate-B-semialdehyde dehydrogenase	Aspartate semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	identified by similarity to SP:Q04797; match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296 aspartate-semialdehyde dehydrogenase	InterProMatches:IPR005986; Molecular Function: aspartate-semialdehyde dehydrogenase activity (GO:0004073), Biological Process: methionine biosynthesis (GO:0009086), Biological Process: threonine biosynthesis (GO:0009088) aspartate-semialdehyde dehydrogenase	aspartate-semialdehyde dehydrogenase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark aspartate semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	Similar to Leptospira interrogans aspartate-semialdehyde dehydrogenase Asd or Lb355 SWALL:DHAS_LEPIN (SWALL:P41394) (349 aa) fasta scores: E(): 8.9e-29, 38.48% id in 343 aa, and to Chlamydophila caviae aspartate-semialdehyde dehydrogenase Asd or cca00714 SWALL:Q822G8 (EMBL:AE016996) (334 aa) fasta scores: E(): 3.1e-108, 80.23% id in 334 aa, and to Chlamydia pneumoniae aspartate dehydrogenase Asd or cpn1048 or cp0804 SWALL:Q9Z6L1 (EMBL:AE001685) (333 aa) fasta scores: E(): 1.2e-91, 68.67% id in 332 aa putative aspartate-semialdehyde dehydrogenase	Aspartate semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	aspartate semialdehyde dehydrogenase	Ortholog of S. aureus MRSA252 (BX571856) SAR1406 aspartate semialdehyde dehydrogenase	putative assignment aspartate Semialdehyde dehydrogenase	Similar to sp|Q9ZDL2|DHAS_RICPR rc||asd sp|O67716|DHAS_AQUAE sp|Q56732|DHAS_SHESP; Ortholog to ERGA_CDS_09430 Aspartate-semialdehyde dehydrogenase	aspartate-semialdehyde dehydrogenase	identified by similarity to SP:Q04797; match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296 aspartate-semialdehyde dehydrogenase	COG0136 Asd aspartate-semialdehyde dehydrogenase aspartate-semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	
CHLTR00372	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	similar to dihydrodipicolinate reductase proteins hypothetical protein	conserved gene dihydropicolinate reductase	similar to dihydrodipicolinate reductase proteins hypothetical protein	Dihydrodipicolinate reductase	identified by match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036 dihydrodipicolinate reductase	identified by similarity to SP:Q52419; match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036 dihydrodipicolinate reductase	Dihydrodipicolinate reductase	dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	identified by similarity to SP:P04036; match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036 dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Mb2795c, dapB, len: 245 aa. Equivalent to Rv2773c, len: 245 aa, from Mycobacterium tuberculosis strain H37Rv, (99.2% identity in 245 aa overlap). dapB, dihydrodipicolinate reductase (EC 1.3.1.26) (see first citation below), highly similar to many e.g.  P40110|DAPB_CORGL from Corynebacterium glutamicum (Brevibacterium flavum) (248 aa), FASTA scores: opt: 1030, E(): 1.8e-58, (65.45% identity in 246 aa overlap); O86836|DAPB_STRCO|SC9A10.03 from Streptomyces coelicolor (250 aa), FASTA scores: opt: 997, E(): 2.3e-56, (61.15% identity in 247 aa overlap); P42976|DAPB_BACSU from Bacillus subtilis (267 aa), FASTA scores: opt: 608, E(): 1.7e-31, (45.95% identity in 209 aa overlap); P46829|DAPB_MYCBO from Mycobacterium bovis (see second citation below) (271 aa), FASTA scores: opt: 505, E(): 6.3e-25, (36.2% identity in 246 aa overlap); etc. BELONGS TO THE DIHYDRODIPICOLINATE REDUCTASE FAMILY. DIHYDRODIPICOLINATE REDUCTASE DAPB (DHPR)	InterProMatches:IPR000846; Molecular Function: dihydrodipicolinate reductase activity (GO:0008839), Biological Process: lysine biosynthesis via diaminopimelate (GO:0009089) dihydrodipicolinate reductase	dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	IPR000846: Dihydrodipicolinate reductase dihydrodipicolinate reductase	Dihydrodipicolinate reductase	similar to Salmonella typhi CT18 dihydrodipicolinate reductase dihydrodipicolinate reductase	Similar to Pseudomonas aeruginosa dihydrodipicolinate reductase DapB or pa4759 SWALL:DAPB_PSEAE (SWALL:P38103) (268 aa) fasta scores: E(): 2.3e-13, 31.38% id in 274 aa, and to Chlamydophila caviae dihydrodipicolinate reductase DapB or cca00715 SWALL:Q822G7 (EMBL:AE016996) (246 aa) fasta scores: E(): 4.7e-78, 78.86% id in 246 aa, and to Rickettsia conorii dihydrodipicolinate reductase DapB or rc0190 SWALL:DAPB_RICCN (SWALL:Q92J79) (239 aa) fasta scores: E(): 4.2e-18, 30.8% id in 237 aa putative dihydrodipicolinate reductase	Dihydrodipicolinate reductase	
CHLTR00373	Putative uncharacterized protein	conserved hypothetical protein	hypothetical membrane spanning protein	Putative integral membrane protein	Putative integral membrane protein	Putative integral membrane protein	
CHLTR00374	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	5-enolpyruvylshikimate-3-phosphate synthase	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	Mb3256, aroA, len: 450 aa. Equivalent to Rv3227, len: 450 aa, from Mycobacterium tuberculosis strain H37Rv, (99.8% identity in 450 aa overlap). aroA, 3-phosphoshikimate 1-carboxyvinyl transferase (EC 2.5.1.19) (see citation below), equivalent (but C-terminus longer) to Q9CCI3|AROA|ML0792 PUTATIVE 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYL TRANSFERASE from Mycobacterium leprae (430 aa), FASTA scores: opt: 1466, E(): 1.4e-78, (55.05% identity in 427 aa overlap). Contains PS00885 EPSP synthase signature 2. BELONGS TO THE EPSP SYNTHASE FAMILY. 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE AROA (5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE SYNTHASE) (EPSP SYNTHASE) (EPSPS)	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	IPR001986: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 3-enolpyruvylshikimate-5-phosphate synthetase	similar to Salmonella typhi CT18 3-phosphoshikimate 1-carboxyvinyltransferase 3-phosphoshikimate 1-carboxyvinyltransferase	Similar to Salmonella typhi 3-phosphoshikimate 1-carboxyvinyltransferase AroA or Sty0978 or t1956 SWALL:AROA_SALTI (SWALL:P19786) (427 aa) fasta scores: E(): 7.4e-27, 29.79% id in 433 aa and to Methanococcus jannaschii probable 3-phosphoshikimate 1-carboxyvinyltransferase AroA or Mj0502 SWALL:AROA_METJA (SWALL:Q57925) (429 aa) fasta scores: E(): 3.4e-39, 33.09% id in 420 aa. Note the 3' extension of this CDS relative to most other aroA orthologues. This results in a large overlap with the downstream aroM CDS. 3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	5-enolpyruvoylshikimate-3-phosphate synthase	putative assignment EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	5-enolpyruvylshikimate-3-phosphate synthase; EPSP synthase; EPSPS; Similar to: HI1589, AROA_HAEIN 3-phosphoshikimate 1-carboxyvinyltransferase	Similar to Haemophilus somnus 3-phosphoshikimate 1-carboxyvinyltransferase AroA SWALL:AROA_HAESO (SWALL:P52310) (432 aa) fasta scores: E(): 9.4e-36, 34.65% id in 430 aa, and to Bacteroides thetaiotaomicron 3-phosphoshikimate 1-carboxyvinyltransferase BT2186 SWALL:AAO77293 (EMBL:AE016935) (410 aa) fasta scores: E(): 1e-122, 77.03% id in 405 aa, and to Vibrio vulnificus 3-phosphoshikimate 1-carboxyvinyltransferase Vv12127 SWALL:Q8DAR4 (EMBL:AE016804) (376 aa) fasta scores: E(): 8.2e-37, 34.12% id in 378 aa putative 3-phosphoshikimate 1-carboxyvinyltransferase	5-enolpyruvylshikimate-3-phosphate synthase AroA protein	Similar to AROA_VIBPA (Q87QX9) 3-phosphoshikimate 1-carboxyvinyltransferase from Vibrio parahaemolyticus (426 aa). FASTA: opt: 928 Z-score: 1157.4 E(): 1.4e-56 Smith-Waterman score: 928; 36.916 identity in 428 aa overlap 3-phosphoshikimate 1-carboxyvinyltransferase	5-enolpyruvylshikimate-3-phosphate synthase	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	3-phosphoshikimate 1-carboxyvinyltransferase	
CHLTR00375	Shikimate kinase	Shikimate kinase	shikimate kinase EC 2.7.1.71	shikimate kinase	Shikimate kinase	Shikimate kinase	Shikimate kinase	Shikimate kinase	
CHLTR00376	Chorismate synthase	Chorismate synthase	Chorismate synthase	Chorismate synthase	Chorismate synthase	chorismate synthase	conserved gene chorismate synthase AroC	chorismate synthase	chorismate synthase	identified by similarity to SP:P12008; match to protein family HMM PF01264; match to protein family HMM TIGR00033 chorismate synthase	Chorismate synthase	Chorismate synthase	Chorismate synthase	identified by similarity to SP:P12008; match to protein family HMM PF01264; match to protein family HMM TIGR00033 chorismate synthase	Chorismate synthase	Chorismate synthase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark chorismate synthase	IPR000453: Chorismate synthase chorismate synthase	similar to Salmonella typhi CT18 chorismate synthase chorismate synthase	Similar to Lycopersicon esculentum chorismate synthase 1, chloroplast precursor CS1 SWALL:ARC1_LYCES (SWALL:Q42884) (440 aa) fasta scores: E(): 2.4e-46, 44.97% id in 358 aa, and to Chlamydophila caviae chorismate synthase AroC or cca00725 SWALL:Q822F8 (EMBL:AE016996) (359 aa) fasta scores: E(): 9.2e-117, 84.68% id in 359 aa, and to Methanosarcina mazei chorismate synthase AroC or mm1712 SWALL:AROC_METMA (SWALL:Q8PW84) (365 aa) fasta scores: E(): 7.8e-52, 45.19% id in 354 aa putative chorismate synthase	Chorismate synthase	similar to BR0428, chorismate synthase AroC, chorismate synthase	Chorismate synthase	Chorismate synthase	Chorismate synthase	Chorismate synthase	Chorismate synthase	definite assignment Chorismate synthase	chorismate synthase	
CHLTR00377	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	conserved gene 3-dehydroquinate synthetase	3-dehydroquinate synthase	3-dehydroquinate synthase	identified by similarity to EGAD:17270; match to protein family HMM PF01761; match to protein family HMM TIGR01357 3-dehydroquinate synthase	3-dehydroquinate synthase	identified by similarity to SP:P07639; match to protein family HMM PF01761; match to protein family HMM TIGR01357 3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	identified by match to protein family HMM PF01761; match to protein family HMM TIGR01357 3-dehydroquinate synthase	3-dehydroquinate synthase	InterProMatches:IPR002658; Molecular Function: 3-dehydroquinate synthase activity (GO:0003856), Biological Process: aromatic amino acid family biosynthesis (GO:0009073) 3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 3-dehydroquinate synthase	3-dehydroquinate synthase	IPR002658: 3-dehydroquinate synthase dehydroquinate synthase	similar to Salmonella typhi CT18 3-dehydroquinate synthase 3-dehydroquinate synthase	Similar to Enterococcus faecalis 3-dehydroquinate synthase AroB or EF1563 SWALL:Q9ANY9 (EMBL:AF318277) (358 aa) fasta scores: E(): 2.5e-26, 33.22% id in 322 aa, and similar to Clostridium tetani 3-dehydroquinate synthase CTC01620 SWALL:Q894C9 (EMBL:AE015941) (373 aa) fasta scores: E(): 9.6e-32, 36.81% id in 326 aa putative 3-dehydroquinate synthase	similar to BR2028, 3-dehydroquinate synthase AroB, 3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	3-dehydroquinate synthase	
CHLTR00378	Shikimate biosynthesis protein aroDE	shikimate biosynthesis protein subunit	shikimate 5-dehydrogenase	shikimate 5-dehydrogenase KEGG: aba:Acid345_4110 shikimate 5-dehydrogenase TIGRFAM: shikimate 5-dehydrogenase PFAM: dehydroquinase class I; Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein	shikimate 5-dehydrogenase	Hypothetical protein	predicted protein go_component: cytoplasm; go_function: 3-dehydroquinate dehydratase activity; shikimate 5-dehydrogenase activity; go_process: aromatic amino acid family biosynthesis; aromatic amino acid family biosynthesis, shikimate pathway	Shikimate 5-dehydrogenase	Shikimate 5-dehydrogenase	Shikimate 5-dehydrogenase	Shikimate dehydrogenase family protein	
CHLTR00379	Putative outer membrane protein CT_371	outer membrane protein	hypothetical protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	Putative uncharacterized protein	
CHLTR00380	Porin aaxA	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00381	Pyruvoyl-dependent arginine decarboxylase aaxB	hypothetical protein	hypothetical protein	pseudo	pseudo	Pyruvoyl-dependent arginine decarboxylase	
CHLTR00382	Arginine/agmatine antiporter	arginine/ornithine antiporter Also similar to BAV2686 (55.511 38d).	amino acid permease	Amino acid transporter	arginine/ornithine antiporter	Arginine/ornithine antiporter	Hypothetical protein	Amino acid transporter	arginine-ornithine antiporter	Arginine/ornithine antiporter precursor	Arginine/ornithine antiporter precursor	Amino acid permease-associated region	Putative amino acid transporter	Probable amino acid permease	Putative arginine/ornithine antiporter	amino acid permease-associated region PFAM: amino acid permease-associated region; KEGG: sus:Acid_5796 arginine/ornithine antiporter	pseudo	Amino acid permease	Amino acid transporter	Transporter, basic amino acid/polyamine antiporter (APA) family	Arginine/ornithine antiporter	
CHLTR00383	Predicted D-Amino Acid Dehydrogenase	glycine oxidase, putative identified by match to protein family HMM PF01266	glycine dehyrogenase	FAD dependent oxidoreductase	oxidoreductase, FAD-dependent identified by match to protein family HMM PF01266	D-amino acid oxidase family	Probable D-amino acid dehydrogenase	Putative glycine oxidase	Putative oxidoreductase	Putative oxidoreductase	Thiamine biosynthesis glycine oxidase protein	Possible thiamine biosynthesis oxidoreductase ThiO	Putative thiamine biosynthesis oxidoreductase ThiO	Putative thiamine biosynthesis oxidoreductase ThiO	SoxB2	Glycine oxidase	Putative oxidoreductase	FAD dependent oxidoreductase	Glycine oxidase ThiO	
CHLTR00384	Malate dehydrogenase	Malate dehydrogenase	Malate dehydrogenase	conserved gene malate dehydrogenase	Malate dehydrogenase	L-lactate dehydrogenase 2	Malate dehydrogenase	Malate dehydrogenase	Malate dehydrogenase	Malate dehydrogenase	Mb1272, mdh, len: 329 aa. Equivalent to Rv1240, len: 329 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 329 aa overlap). Probable mdh, Malate dehydrogenase (EC 1.1.1.37). Most similar to P50917|MDH_MYCLE MALATE DEHYDROGENASE from Mycobacterium leprae (329 aa), FASTA scores: opt: 1887, E(): 0, (89.1% identity in 329 aa overlap). Contains PS00068 Malate dehydrogenase active site signature. BELONGS TO THE LDH FAMILY. MDH SUBFAMILY. PROBABLE MALATE DEHYDROGENASE MDH	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark malate dehydrogenase	Malate dehydrogenase	Similar to Scherffelia dubia NADP-dependent malate dehydrogenase NADP-Mdh SWALL:Q9GCV9 (EMBL:AJ131203) (401 aa) fasta scores: E(): 3.8e-56, 48.45% id in 324 aa, and to Chlamydophila caviae malate dehydrogenase Mdh or cca00734 SWALL:Q822E9 (EMBL:AE016996) (330 aa) fasta scores: E(): 1.1e-122, 93.03% id in 330 aa, and to Chlamydia pneumoniae malate dehydrogenase MdhC or cpn1028 or cp0824 SWALL:Q9Z6N1 (EMBL:AE001683) (328 aa) fasta scores: E(): 3.9e-111, 84.14% id in 328 aa putative NADP-dependent malate dehydrogenase	Malate dehydrogenase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme malate dehydrogenase	Malate dehydrogenase	Malate dehydrogenase	malate dehydrogenase	InterPro: Malate dehydrogenase NAD or NADP malate dehydrogenase	Malate dehydrogenase, NAD or NADP	Malate dehydrogenase, NAD or NADP	malate dehydrogenase, NAD or NADP	malate dehydrogenase	malate dehydrogenase, NAD-dependent identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01763	malate dehydrogenase	malate dehydrogenase	malate dehydrogenase	Malate dehydrogenase, NAD or NADP	
CHLTR00386	Glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	phosphoglucose isomerase B	Glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	conserved gene glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	identified by similarity to EGAD:10310; match to protein family HMM PF00342 glucose-6-phosphate isomerase	glucose-6-phosphate isomerase	identified by match to protein family HMM PF00342 glucose-6-phosphate isomerase	glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	identified by match to protein family HMM PF00342 glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	Glucose-6-phosphate isomerase	Mb0971c, pgi, len: 553 aa. Equivalent to Rv0946c, len: 553 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 553 aa overlap). Probable pgi, glucose-6-phosphate isomerase (EC 5.3.1.9), equivalent to NP_301236.1|NC_002677 glucose-6-phosphate isomerase from Mycobacterium leprae (554 aa); and P96803|G6PI_MYCSM GLUCOSE-6-PHOSPHATE ISOMERASE from Mycobacterium smegmatis (442 aa). Also highly similar to others e.g. T36015 glucose-6-phosphate isomerase from Streptomyces coelicolor (551 aa); P11537|G6PI_ECOLI|GPI glucose-6-phosphate isomerase from Escherichia coli strains K12 and O157:H7 (549 aa), FASTA scores: opt: 1779, E(): 0, (51.4% identity in 554 aa overlap); etc. Contains PS00765 Phosphoglucose isomerase signature 1, and PS00174 Phosphoglucose isomerase signature 2. BELONGS TO THE GPI FAMILY. PROBABLE GLUCOSE-6-PHOSPHATE ISOMERASE PGI (GPI) (PHOSPHOGLUCOSE ISOMERASE) (PHOSPHOHEXOSE ISOMERASE) (PHI)	InterProMatches:IPR001672; Molecular Function: glucose-6-phosphate isomerase activity (GO:0004347), Biological Process: gluconeogenesis (GO:0006094), Biological Process: glycolysis (GO:0006096) glucose-6-phosphate isomerase	glucose-6-phosphate isomerase A	Glucose-6-phosphate isomerase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark glucose-6-phosphate isomerase	IPR001672: Phosphoglucose isomerase (PGI) glucosephosphate isomerase	similar to Salmonella typhi CT18 glucose-6-phosphate isomerase glucose-6-phosphate isomerase	Similar to Escherichia coli, and Escherichia coli O157:H7 glucose-6-phosphate isomerase Pgi or b4025 or z5623 or ecs5008 SWALL:G6PI_ECOLI (SWALL:P11537) (549 aa) fasta scores: E(): 3.3e-40, 35.86% id in 513 aa, and to Chlamydophila caviae glucose-6-phosphate isomerase Pgi or cca00736 SWALL:Q822E7 (EMBL:AE016996) (527 aa) fasta scores: E(): 2.5e-193, 88.61% id in 527 aa, and to Chlamydia pneumoniae glucose-6-phosphate isomerase Pgi or cpn1025 or cp0827 SWALL:G6PI_CHLPN (SWALL:Q9Z6N4) (526 aa) fasta scores: E(): 1.5e-153, 70.36% id in 523 aa putative glucose-6-phosphate isomerase	
CHLTR00387	GTP Binding Protein	GTP-binding protein HflX	HflX-related GTP-binding protein	Similar to GTP-binding protein proteinase modulator YnbA	GTP-binding protein	GTPase	identified by match to protein family HMM PF04471 GTP-binding protein, putative	GTP-binding protein HflX	identified by similarity to SP:P25519; match to protein family HMM TIGR00231 GTP-binding protein HflX	GTP-binding protein hflX	GTP-binding protein	GTP-binding protein proteinase modulator YnbA	HflX	GTP-binding protein	PROBABLE GTP-BINDING PROTEIN HFLX	Mb2744c, hflX, len: 495 aa. Equivalent to Rv2725c, len: 495 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 495 aa overlap). Probable hflX (hfl for high frequency of lysogenization), GTP-binding protein (EC 3.1.5.-),equivalent to Q9CCC0|ML0997 (alias Q49843|HFLX but longer) POSSIBLE ATP/GTP-BINDING PROTEIN from Mycobacterium leprae (488 aa), FASTA scores: opt: 2562, E(): 1.1e-133, (84.55% identity in 485 aa overlap).  Also highly similar to many e.g. Q9XCC1 from Streptomyces fradiae (425 aa), FASTA scores: opt: 1280, E(): 3.2e-63, (57.7% identity in 423 aa overlap); P73965|HFLX|SLR1521 from Synechocystis sp. strain PCC 6803 (534 aa), FASTA scores: opt: 1028, E(): 2.8e-49, (44.7% identity in 414 aa overlap); P25519|HFLX_ECOLI|B4173 from Escherichia coli strain K12 (426 aa), FASTA scores: opt: 916, E(): 3.4e-43, (40.1% identity in 414 aa overlap); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop). PROBABLE GTP-BINDING PROTEIN HFLX	Molecular Function: GTP binding (GO:0005525) GTP-binding protein	GTPase	HflX protein,putative GTPase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark GTP-binding protein	HflX COG2262 GTPases GTP-binding protein	GTP-binding protein HflX	IPR006073: GTP1/OBG putative GTP-ase, together with HflCK possibly involved in phage lambda cII repressor stability	similar to Salmonella typhi CT18 HflX protein, putative GTP-binding protein HflX protein, putative GTP-binding protein	Similar to Escherichia coli GTP-binding protein HflX or b4173 SWALL:HFLX_ECOLI (SWALL:P25519) (426 aa) fasta scores: E(): 1.1e-40, 40.35% id in 399 aa and to Chlamydia muridarum GTP-binding protein tc0658 SWALL:Q9PK15 (EMBL:AE002334) (447 aa) fasta scores: E(): 1.6e-119, 74.72% id in 447 aa putative GTP-binding protein	similar to BR1110, GTP-binding protein, hypothetical GTP-binding protein, hypothetical	Putative uncharacterized protein gbs1284	GTP-binding protein	GTP-binding protein hflX	
CHLTR00388	Predicted metal dependent hydrolase	Metal-dependent hydrolase protein	Similar to Chlamydia pneumoniae metal dependent hydrolase Cpn0479 or cp0275 SWALL:Q9Z872 (EMBL:AE001633) (270 aa) fasta scores: E(): 1e-59, 55.97% id in 268 aa and to Escherichia coli PhnP protein phnp or b4092 SWALL:PHNP_ECOLI (SWALL:P16692) (252 aa) fasta scores: E(): 0.016, 24.71% id in 263 aa putative hydrolase	similar to BR0997, conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	PhnP protein	conserved family - putative metal-dependent hydrolase hypothetical protein	Similar to Borrelia burgdorferi PhnP protein BB0533 SWALL:O51483 (EMBL:AE001155) (253 aa) fasta scores: E(): 1.5e-32, 35.22% id in 247 aa, and to Escherichia coli PhnP protein B4092 SWALL:PHNP_ECOLI (SWALL:P16692) (252 aa) fasta scores: E(): 2.7e-08, 27.09% id in 262 aa putative hydrolase	PhnP protein	Metal-dependent hydrolase of the beta-lactamase superfamily	conserved hypothetical protein	Beta-lactamase-like	Phosphonate metabolism	Beta-lactamase-like protein	beta-lactamase-like	Beta-lactamase-like	metallo-beta-lactamase superfamily protein identified by match to protein family HMM PF00753	putative hydrolase	Metal-dependent hydrolases of the beta-lactamase superfamily I	conserved hypothetical protein similarity:fasta; with=UniProt:Q8UFA4_AGRT5 (EMBL:AE008073); Agrobacterium tumefaciens (strain C58/ATCC 33970).; Metal dependent hydrolase (AGR_C_2754p).; length=284; id 71.747; 269 aa overlap; query 2-270; subject 13-281	metal dependent hydrolase of the beta-lactamase superfamily I	Beta-lactamase-like	beta-lactamase-like	beta-lactamase-like PFAM: beta-lactamase-like: (3.1e-05) KEGG: jan:Jann_1274 beta-lactamase-like, ev=1e-110, 70% identity	conserved hypothetical protein	probable metal-dependent hydrolase protein similar to Atu1494 [Agrobacterium tumefaciens str.  C58], mll0416 [Mesorhizobium loti] and SMc01194[Sinorhizobium meliloti] Similar to swissprot:Q8UFA4 Putative location:bacterial cytoplasm Psort-Score: 0.0646	hydrolase	Beta-lactamase-like protein precursor	Metal-dependent hydrolase	
CHLTR00389	Probable ABC transporter arginine-binding protein	identified by match to protein family HMM PF00497 basic amino acid ABC transporter, periplasmic basic amino acid-binding protein	putative solute-binding component of ABC transporter similarity:fasta; with=UniProt:Q8UE82_AGRT5 (EMBL:AE008107); Agrobacterium tumefaciens (strain C58/ATCC 33970).; ABC transporter, substrate binding protein (AGR_C_3448p). ABC transporter, substrate binding protein (AGR_C_3448p).; length=257; id 70.196; 255 aa overlap; query 4-257; subject 4-257	ABC transporter of amino acids	probable amino acid ABC transporter, substrate-binding protein similar to AGR_C_3448p [Agrobacterium tumefaciens] and SMc00140 [Sinorhizobium meliloti] Similar to swissprot:Q8UE82 Putative location:bacterial periplasmic space Psort-Score: 0.9338; go_component: membrane [goid 0016020]; go_component: periplasmic space (sensu Gram-negative Bacteria) [goid 0030288]; go_function: transporter activity [goid 0005215]; go_function: inotropic glutamate receptor activity [goid 0004970]; go_function: glutamate-gated ion channel activity [goid 0005234]; go_process: transport [goid 0006810]	Extracellular solute-binding protein, family 3 precursor	arginine-binding protein	Putative ABC transporter	Extracellular solute-binding protein, family 3	Bacterial extracellular solute-binding family protein	Extracellular solute-binding protein family 3 precursor	Extracellular solute-binding protein, family 3 precursor	Amino acid ABC transporter, periplasmic amino acid-binding protein	Arginine transport substrate-binding protein precursor	Arginine transport substrate-binding protein precursor	Extracellular solute-binding protein family 3 precursor	Probable amino acid ABC transporter, substrate- binding protein	putative periplasmic lysine-arginine-ornithine-binding protein	Amino acid-binding protein	Extracellular solute-binding protein family 3	Putative secreted protein	Arginine transport substrate-binding protein	Amino acid ABC transporter, periplasmic amino acid-binding protein	
CHLTR00390	Phospho-2-dehydro-3-deoxyheptonate aldolase	Chorismate mutase homolog	identified by similarity to EGAD:21270; match to protein family HMM PF00793; match to protein family HMM PF01817; match to protein family HMM TIGR01361; match to protein family HMM TIGR01801 chorismate mutase/phospho-2-dehydro-3-deoxyheptonate aldolase	Phospho-2-dehydro-3-deoxyheptonate aldolase	Probable phospho-2-dehydro-3-deoxyheptonate aldolase	Phospho-2-dehydro-3-deoxyheptonate aldolase	InterProMatches:IPR006268, IPR010954; Biological Process: aromatic amino acid family biosynthesis (GO:0009073), Molecular Function: aldehyde-lyase activity (GO:0016832) 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase and chorismate mutase-isozyme 3	phospho-2-dehydro-3-deoxyheptonate aldolase; chorismate mutase AroA	Similar to many proposed to be involved in aromatic amino acid biosynthesis including: Bacillus subtilis AroA aroA SWALL:AROG_BACSU (SWALL:P39912) (358 aa) fasta scores: E(): 3.4e-34, 42.56% id in 242 aa, and to Chlamydia pneumoniae deoxyheptonate aldolase arog or cpn0484 or cp0270 SWALL:Q9Z867 (EMBL:AE001633) (285 aa) fasta scores: E(): 1.6e-76, 74.62% id in 268 aa. Note, lacks an appropriate translational start site. pseudo putative aldolase (pseudogene)	chorismate mutase homolog	Ortholog of S. aureus MRSA252 (BX571856) SAR1815 DAHP synthetase-chorismate mutase	chorismate mutase homolog	Phospho-2-dehydro-3-deoxyheptonate aldolase	best blastp match gb|AAK34362.1| (AE006589) putative chorismate mutase [Streptococcus pyogenes M1 GAS] putative chorismate mutase	identified by match to protein family HMM PF00793; match to protein family HMM PF01817; match to protein family HMM TIGR01361; match to protein family HMM TIGR01801 chorismate mutase/phospho-2-dehydro-3-deoxyheptonate aldolase	Similar to Porphyromonas gingivalis W83 phospho-2-dehydro-3-deoxyheptonate aldolase/chorismate mutase PG0885 SWALL:AAQ66031 (EMBL:AE017175) (366 aa) fasta scores: E(): 2.4e-69, 54.07% id in 344 aa, and to Bacillus subtilis AroA(G) protein [includes: phospho-2-dehydro-3-deoxyheptonate aldolase; chorismate mutase] AroA or BSU29750 SWALL:AROG_BACSU (SWALL:P39912) (358 aa) fasta scores: E(): 2.4e-21, 35.24% id in 244 aa putative chorismate mutase	chorismate mutase	2-dehydro-3-deoxyphosphoheptonate aldolase	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	identified by similarity to SP:P39912; match to protein family HMM TIGR01361 phospho-2-dehydro-3-deoxyheptonate aldolase	Similar to Bacillus subtilis 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase AroA protein [includes: phospho-2-dehydro-3-deoxyheptonate aldolase (EC 2.5.1.54); chorismate mutase (EC 5.4.99.5)] SW:AROG_BACSU (P39912) (358 aa) fasta scores: E(): 1.2e-82, 65.537% id in 354 aa, and to Bacillus halodurans phospho-2-dehydro-3-deoxyheptonate aldolase/chorismate mutase BH3242 TR:Q9K7W6 (EMBL:AP001518) (364 aa) fasta scores: E(): 1.6e-83, 64.246% id in 358 aa DAHP synthetase-chorismate mutase	phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2	phospho-2-dehydro-3-deoxyheptonate aldolase	phospho-2-dehydro-3-deoxyheptonate aldolase	identified by similarity to EGAD:21270; match to protein family HMM PF00793; match to protein family HMM PF01817; match to protein family HMM TIGR01361; match to protein family HMM TIGR01801 chorismate mutase/phospho-2-dehydro-3-deoxyheptonate aldolase	similar to gi|27468328|ref|NP_764965.1| [Staphylococcus epidermidis ATCC 12228], percent identity 89 in 363 aa, BLASTP E(): 0.0 DAHP synthetase-chorismate mutase	identified by match to protein family HMM PF00793; match to protein family HMM TIGR01361 phospho-2-dehydro-3-deoxyheptonate aldolase	Phospho-2-dehydro-3-deoxyheptonate aldolase (chorismate mutase)	chorismate mutase/phospho-2-dehydro-3-deoxyheptonate aldolase identified by match to protein family HMM PF00793; match to protein family HMM PF01817; match to protein family HMM TIGR01361; match to protein family HMM TIGR01801	
CHLTR00391	Putative uncharacterized protein	hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00392	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative membrane protein	Putative membrane protein	Putative membrane protein	
CHLTR00393	Putative uncharacterized protein	conserved hypothetical protein	hypothetical membrane associated protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00394	Uncharacterized HIT-like protein CT_385	HIT (Histidine triad) family	YcfF protein	conserved hypothetical protein	Similar to histidine triad-like protein YcfF of Escherichia coli	Similar to HIT( Histidine triad nucleotide-binding protein) family protein hypothetical protein	conserved gene HIT family hydrolase	Similar to HIT( Histidine triad nucleotide-binding protein) family protein hypothetical protein	protein kinase C inhibitor	Probable HIT family protein	Putative uncharacterized protein	HIT family hydrolase	identified by match to protein family HMM PF01230 HIT family protein	HIT family hydrolase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark histidine triad protein homolog (HIT-like protein)	Probable HIT family protein	IPR001310: Histidine triad (HIT) protein putative protein kinase C inhibitor	HIT family hydrolase	similar to Salmonella typhi CT18 putative protein kinase C inhibitor putative protein kinase C inhibitor	Similar to Fusobacterium nucleatum bis(5'-nucleosyl)-tetraphosphatase (EC 3.6.1.17) fn1873 SWALL:Q8RHW7 (EMBL:AE010489) (112 aa) fasta scores: E(): 2.6e-15, 47.7% id in 109 aa and to Campylobacter jejuni hit-family protein Cj0898 SWALL:Q9PP33 (EMBL:AL139076) (121 aa) fasta scores: E(): 5.1e-15, 49.05% id in 106 aa.  Contains a histidine triad motif conserved hypothetical protein	HIT hydrolase family protein	Histidine triad-like protein	Hit-like protein involved in cell-cycle regulation	Hypothetical HIT-like protein JHP0977	Putative uncharacterized protein	Putative nucleotide-binding protein	HIT (Histidine triad) family protein	Similar to rp||pkcI rc||pkcI; Ortholog to ERGA_CDS_02680 Protein kinase C inhibitor 1	protein kinase C inhibitor 1 (pkcI ) similar to EAA25530.1 protein kinase C inhibitor 1	
CHLTR00395	UPF0160 protein CT_386	Metal-dependent hydrolase protein	Similar to Prokaryotic and Eukaryotic proteins including: Chlamydia pneumoniae hypothetical protein cpn0489/cp0265/cpj0489 cpn0489 or cp0265 or cpj0489 SWALL:Y489_CHLPN (SWALL:Q9Z862) (290 aa) fasta scores: E(): 8.7e-104, 76.55% id in 290 aa and to Homo sapiens Myg1 protein c12orf10 SWALL:MYG1_HUMAN (SWALL:Q9HB07) (376 aa) fasta scores: E(): 2.4e-12, 32.18% id in 320 aa conserved hypothetical protein	Hypothetical protein	identified by similarity to OMNI:NTL01ATA1056; match to protein family HMM PF03690 conserved hypothetical protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type e : enzyme putative Metal-dependent protein hydrolase	UPF0160 protein MYG1, mitochondrial Precursor [Source:UniProtKB/Swiss-Prot;Acc:Q9HB07]	conserved hypothetical protein similarity:fasta; with=UniProt:Q8U9C3_AGRT5 (EMBL:AE008302); Agrobacterium tumefaciens (strain C58/ATCC 33970).; myg1; OrderedLocusNames=AGR_L_2056,Atu3805;; Hypothetical protein myg1 (AGR_L_2056p). Hypothetical protein myg1 (AGR_L_2056p).; length=315; id 80.707; 311 aa overlap; query 1-309; subject 1-310	hypothetical protein	metal-dependent protein hydrolase PFAM: metal-dependent protein hydrolase: (1.5e-26) KEGG: atc:AGR_L_2056 MYG1 protein, ev=1e-110, 65% identity	putative metal-dependent hydrolase protein similar to AGR_L_2056p [Agrobacterium tumefaciens] and Magn8704 [Magnetospirillum magnetotacticum] Similar to swissprot:Q8U9C3 Putative location:bacterial cytoplasm Psort-Score: 0.0644	transcript_id=ENSGACT00000009024	MYG1 protein	Metal-dependent protein hydrolase	transcript_id=ENSEEUT00000013946	Uncharacterized conserved protein	transcript_id=ENSOGAT00000009475	transcript_id=ENSSTOT00000004326	transcript_id=ENSMLUT00000017300	UPF0160 protein MYG1  [Source:UniProtKB/Swiss- Prot;Acc:Q9HB07]	MYG1 protein	predicted protein	predicted protein	metal-dependent protein hydrolase PFAM: metal-dependent protein hydrolase KEGG: cps:CPS_2163 hypothetical protein	Magnaporthe grisea hypothetical protein	Botrytis cinerea hypothetical protein	Lodderomyces elongisporus (LELG_01666.1) conserved hypothetical protein (translation)	
CHLTR00396	Putative uncharacterized protein	hypothetical protein, conserved	hypothetical protein, conserved	conserved hypothetical protein	transporter	hypothetical protein, conserved	hypothetical protein, conserved previous systematic id LinJ35.1630	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00397	UPF0235 protein CT_388	conserved hypothetical protein Conserved hypothetical protein. Homology to vc0458 of V. clholerae of 48% (sprot:Y458_VIBCH). InterPro: DUF167 (IPR003748). Pfam: Uncharacterized ACR, YGGU family, COF1872. no signal peptide. no TMHs	hypothetical cytosolic protein	protein of unknown function DUF167 PFAM: protein of unknown function DUF167 KEGG: pca:Pcar_0617 conserved hypothetical protein TIGR00251	Putative uncharacterized protein	Putative uncharacterized protein	Uncharacterized conserved protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00398	Putative uncharacterized protein	Similar to Chlamydia pneumoniae hypothetical protein Cp0263 SWALL:Q9K2B1 (EMBL:AE002186) (410 aa) fasta scores: E(): 1.9e-131, 74.69% id in 403 aa and Chlamydia muridarum hypothetical protein Tc0668 tc0668 SWALL:Q9PK05 (EMBL:AE002334) (408 aa) fasta scores: E(): 6.7e-123, 70.17% id in 409 aa putative exported protein	conserved hypothetical protein	conserved hypothetical protein	protein of unknown function DUF1207 PFAM: protein of unknown function DUF1207 KEGG: neu:NE1230 hypothetical protein	hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00399	LL-diaminopimelate aminotransferase	Similar to many proposed aminotransferases including: Bacillus subtilis probable aspartate aminotransferase YwfG or ipa-85D SWALL:AAT2_BACSU (SWALL:P39643) (399 aa) fasta scores: E(): 2.6e-21, 26.66% id in 390 aa and to Chlamydia muridarum aminotransferase, class I tc0669 SWALL:Q9PK04 (EMBL:AE002334) (393 aa) fasta scores: E(): 1.2e-98, 60% id in 390 aa putative aminotransferase	Aminotransferases class-I	Similar to Methanobacterium thermoautotrophicum aspartate aminotransferase related protein MTH52 SWALL:O26158 (EMBL:AE000797) (410 aa) fasta scores: E(): 1.8e-106, 62.31% id in 406 aa, and to Rhizobium meliloti putative aminotransferase AatC or R01723 or SMC00294 SWALL:AATC_RHIME (SWALL:O87320) (405 aa) fasta scores: E(): 1e-10, 28.29% id in 410 aa putative aminotransferase-related protein	Aspartate/tyrosine/aromatic aminotransferase	aminotransferase, classes I and II identified by match to protein family HMM PF00155	Aminotransferase, class I and II	aminotransferase, classes I and II identified by match to protein family HMM PF00155	aspartate aminotransferase EC 2.6.1.1	putative aminotransferase	Aminotransferase, classes I and II	hypothetical protein similarity to COG0436 PLP-dependent aminotransferases(Evalue: 1E-163)	aminotransferase, classes I and II identified by match to protein family HMM PF00155; match to protein family HMM PF01053	aspartate aminotransferase	Putative aminotransferase	predicted protein go_function: transaminase activity; go_process: biosynthesis	Aminotransferase, class I and II	Aminotransferase, class I and II	Aspartate aminotransferase	Aspartate aminotransferase	Aminotransferase	Aspartate aminotransferase	Aminotransferase class I and II	LL-diaminopimelate aminotransferase	LL-diaminopimelate aminotransferase	LL-diaminopimelate aminotransferase	LL-diaminopimelate aminotransferase	Aspartate aminotransferase	Aminotransferase class I and II	
CHLTR00400	Putative uncharacterized protein	conserved hypothetical protein	ABC transporter substrate-binding protein	ABC transporter substrate-binding component precursor	ABC transporter substrate-binding component precursor	ABC transporter substrate-binding component	
CHLTR00401	Uncharacterized protein CT_392	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00402	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase (Proline--tRNA ligase)(ProRS)(Global RNA synthesis factor)	conserved gene prolyl-tRNA synthase	Prolyl-tRNA synthetase (Proline--tRNA ligase)(ProRS)(Global RNA synthesis factor)	Prolyl-tRNA synthetase	identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM PF04073; match to protein family HMM TIGR00409 prolyl-tRNA synthetase	Prolyl-tRNA synthetase	proline-tRNA ligase	identified by similarity to SP:P16659; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00409 prolyl-tRNA synthetase	Prolyl-tRNA synthetase	prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	identified by similarity to SP:P16659; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM PF04073; match to protein family HMM TIGR00409 prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase protein	Prolyl-tRNA synthetase	Mb2870c, proS, len: 582 aa. Equivalent to Rv2845c, len: 582 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 582 aa overlap). Probable proS, prolyl-tRNA synthetase (EC 6.1.1.15), highly similar to others e.g. Q9KYR6|SYP_STRCO|PROS|SC5H4.23 from Streptomyces coelicolor (567 aa), FASTA scores: opt: 1161, E(): 9e-64, (57.15% identity in 574 aa overlap); P56124|SYP_HELPY|PROS|HP0238 from Helicobacter pylori (Campylobacter pylori) (577 aa), FASTA scores: opt: 1082, E(): 6.6e-59, (37.8% identity in 553 aa overlap); P16659|SYP_ECOLI|PROS|DRPA|B0194 from Escherichia coli strain K12 (572 aa), FASTA scores: opt: 926, E(): 2.6e-49, (39.85% identity in 587 aa overlap); etc. Contains PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.  BELONGS TO CLASS-II AMINOACYL-TRNA SYNTHETASE FAMILY. PUTATIVE PROLYL-TRNA SYNTHETASE PROS (PROLINE--TRNA LIGASE) (PRORS) (GLOBAL RNA SYNTHESIS FACTOR) (PROLINE TRANSLASE)	InterProMatches:IPR004500; Molecular Function: proline-tRNA ligase activity (GO:0004827), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: protein biosynthesis (GO:0006412) prolyl-tRNA synthetase	proline-tRNA synthetase	Prolyl-tRNA synthetase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark prolyl-tRNA synthetase	ProRS COG0442 Prolyl-tRNA synthetase prolyl-tRNA synthetase	
CHLTR00403	Heat-inducible transcription repressor hrcA	Heat-inducible transcription repressor hrcA	Heat-inducible transcription repressor hrcA	Heat-inducible transcription repressor hrcA	Heat-inducible transcription repressor hrcA	identified by similarity to EGAD:15810; match to protein family HMM PF01628; match to protein family HMM TIGR00331 heat-inducible transcription repressor HrcA	Heat-inducible transcription repressor hrcA	HrcA Heat-inducible transcription repressor	HrcA family heat-inducible transcriptional repressor	identified by similarity to SP:P54305; match to protein family HMM PF01628; match to protein family HMM TIGR00331 heat-inducible transcription repressor HrcA	Heat-inducible transcription repressor hrcA	heat shock protein, transcription repressor	Heat-inducible transcription repressor hrcA	Heat-inducible transcription repressor hrcA	Heat-inducible transcription repressor hrcA	Heat-inducible transcription repressor HrcA	Heat-inducible transcription repressor hrcA	Mb2395c, hrcA, len: 343 aa. Equivalent to Rv2374c, len: 343 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 343 aa overlap). Probable hrcA, heat-inducible transcriptional repressor, equivalent to Q9CCN2|HRCA|ML0624 PUTATIVE HEAT-INDUCIBLE TRANSCRIPTIONAL REGULATOR from Mycobacterium leprae (343 aa), FASTA scores: opt: 1926, E(): 3.9e-107, (89.8% identity in 343 aa overlap). Also highly similar to other heat-inducible transcription repressor proteins e.g.  Q9RDD6|HRCA|SCC77.22c from Streptomyces coelicolor (338 aa), FASTA scores: opt: 1227, E(): 1.1e-65, (58.8% identity in 335 aa overlap); O52163|HRCA_STRAL from Streptomyces albus (338 aa), FASTA scores: opt: 1196, E(): 7.7e-64, (56.1% identity in 335 aa overlap); P25499|HRCA_BACSU HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR from Bacillus subtilis (343 aa), FASTA scores: opt: 538, E(): 8.4e-25, (28.9% identity in 325 aa overlap); etc.  Almost identical, but conflict at C-terminus, to Q49749|YGRP|B1937_F1_18 PUTATIVE HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR from Mycobacterium leprae (197 aa) FASTA scores: opt: 1126, E(): 6.9e-60, (91.8% identity in 195 aa overlap). BELONGS TO THE HRCA FAMILY. PROBABLE HEAT-INDUCIBLE TRANSCRIPTIONAL REPRESSOR HRCA	InterProMatches:IPR002571; negative regulation of class I heat-shock genes (dnaK, groESL), Biological Process: regulation of transcription, DNA-dependent (GO:0006355) transcriptional regulator	heat-inducible transcription repressor HrcA	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark Heat-inducible transcription repressor hrcA	Heat Heat-inducible transcriptional repressor HrcA inducible transcription repressor HrcA	Heat-inducible transcription repressor hrcA	Similar to Bacillus subtilis heat-inducible transcription repressor HrcA SWALL:HRCA_BACSU (SWALL:P25499) (343 aa) fasta scores: E(): 4e-17, 25.64% id in 347 aa and to Chlamydia pneumoniae heat-inducible transcription repressor HrcA or cpn0501 or cp0253 SWALL:HRCA_CHLPN (SWALL:Q9Z850) (398 aa) fasta scores: E(): 5.4e-110, 72.46% id in 385 aa heat-inducible transcription repressor	similar to BR0172, this region was identified by similarity to BR0172; heat-inducible transcription repressor HrcA HrcA, heat-inducible transcription repressor	Heat-inducible transcription repressor hrcA	Heat-inducible transcription repressor hrcA	Heat-inducible transcription repressor hrcA	Heat-inducible transcriptional repressor	
CHLTR00404	Protein grpE	Protein grpE	Protein grpE	Protein grpE	Protein grpE	Protein grpE	Heat-shock protein GrpE(HSP-70 cofactor)	conserved gene heat shock protein GrpE	Heat-shock protein GrpE(HSP-70 cofactor)	Protein grpE	GrpE	heat shock protein GrpE	identified by match to protein family HMM PF01025 co-chaperone GrpE	Protein grpE	heat shock protein, chaperonin	Protein grpE	Protein grpE	Protein grpE	identified by similarity to SP:P15874; match to protein family HMM PF01025 co-chaperone protein GrpE	Protein grpE	heat shock protein, HSP-70 cofactor molecular chaperone GrpE	Protein grpE	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark heat shock protein GrpE	GrpE heat shock protein GrpE cochaperonin, Hsp70 cofactor	Protein grpE	Protein grpE	Molecular chaperone GrpE (heat shock protein)	similar to Salmonella typhi CT18 heat shock protein GrpE (heat shock protein b25.3) (hsp24) heat shock protein GrpE (heat shock protein b25.3) (hsp24)	Similar to Bacillus subtilis GrpE protein(hsp-70 cofactor) SWALL:GRPE_BACSU (SWALL:P15874) (186 aa) fasta scores: E(): 1.7e-11, 34.61% id in 156 aa, and to Chlamydia pneumoniae GrpE protein or cpn0502 or cp0252 SWALL:GRPE_CHLPN (SWALL:Q9Z849) (184 aa) fasta scores: E(): 1.1e-47, 76.66% id in 180 aa GrpE protein(hsp-70 cofactor)	
CHLTR00405	Chaperone protein dnaK	Chaperone protein dnaK	chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein DnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70)	Chaperone protein DnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70)	Chaperone protein dnaK	Chaperone protein dnaK	chaperone protein DnaK	DnaK protein	identified by similarity to SP:P04475; match to protein family HMM PF00012 chaperone protein DnaK	Chaperone protein dnaK	heat shock protein, chaperonin	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK2	Chaperone protein dnaK	Chaperone protein	Chaperone protein dnaK	Mb0358, dnaK, len: 625 aa. Equivalent to Rv0350, len: 625 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 625 aa overlap). Probable DnaK (alternate gene name: hsp70), 70 kDa heat shock protein (see citations below), equivalent to AAA25362.1|M95576|1924344A|738248 heat shock protein 70 from Mycobacterium leprae (621 aa); and DNAK_MYCPA|Q00488 (623 aa), FASTA scores: opt: 3678, E(): 0, (92.3% identity in 625 aa overlap). Also highly similar to others e.g.  Q05558|DNAK_STRCO|453231|CAA54606.1|X77458 CHAPERONE PROTEIN DNAK from Streptomyces coelicolor (618 aa). Has probably an ATPase activity (EC 3.6.1.-). Note that this sequence differs from DNAK_MYCTU|P32723 (609 aa), due to a frameshift near the N-terminus. BELONGS TO THE HEAT SHOCK PROTEIN 70 FAMILY. PROBABLE CHAPERONE PROTEIN DNAK (HEAT SHOCK PROTEIN 70) (HEAT SHOCK 70 KDA PROTEIN) (HSP70)	heat shock protein 70 molecular chaperone DnaK	Chaperone protein dnaK	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark DnaK	DnaK Chaperone protein DnaK (Heat shock protein 70) (HSP70) heat shock protein	Chaperone protein dnaK	IPR001023: Heat shock protein Hsp70 chaperone Hsp70 in DNA biosynthesis/cell division	Molecular chaperone, DnaK	similar to Salmonella typhi CT18 DnaK protein (heat shock protein 70) DnaK protein (heat shock protein 70)	
CHLTR00406	Ribonuclease R	Rnr; exoribonuclease RNAse R	Ribonuclease R	VacB	Ribonuclease R	Similar to exoribonuclease RNase R hypothetical protein	conserved gene (exo)ribonuclease R	Similar to exoribonuclease RNase R hypothetical protein	Ribonuclease R	identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358 exoribonuclease, VacB/RNase II family	Ribonuclease R	Exoribonuclease II	protein conferring resistance to acetazolamide Zam	identified by similarity to SP:P21499; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 ribonuclease R	Probable ribonuclease R	VacB protein	Ribonuclease R	Ribonulease R	Ribonuclease R	InterProMatches:IPR004476; nonspecific degradation of rRNA,Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease activity (GO:0004540), Biological Process: RNA metabolism (GO:0016070) ribonuclease R	ribonuclease R	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark RNase R	COG0557 Exoribonuclease R Ribonuclease R	Exoribonuclease	IPR001900: Ribonuclease II; IPR003029: RNA binding S1 putative exoribonuclease	similar to Salmonella typhi Ty2 ribonuclease R ribonuclease R	Weakly similar to Escherichia coli ribonuclease R Rnr or VacB or b4179 SWALL:RNR_ECOLI (SWALL:P21499) (813 aa) fasta scores: E(): 2.3e-41, 28.95% id in 701 aa and to Chlamydia muridarum ribonuclease R Rnr or VacB or tc0676 SWALL:RNR_CHLMU (SWALL:Q9PK00) (692 aa) fasta scores: E(): 5.7e-195, 71.64% id in 677 aa putative ribonuclease	Putative uncharacterized protein	similar to BRA0605, exoribonuclease, VacB/RNase II family exoribonuclease, VacB/RNase II family	
CHLTR00407	Putative uncharacterized protein	Putative uncharacterized protein TTHA1624	Similar to Chlamydia pneumoniae ct398 hypothetical protein cpn0525 or cpj0525 or cp0228 SWALL:Q9Z827 (EMBL:AE001637) (254 aa) fasta scores: E(): 2.5e-64, 86.61% id in 254 aa. CDS contains coiled coil region from residues 32-124. conserved hypothetical protein	Putative uncharacterized protein	Putative	Hypothetical protein	Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0883 SWALL:AAO75990 (EMBL:AE016929) (276 aa) fasta scores: E(): 4e-65, 89.37% id in 273 aa, and to Chlamydia trachomatis hypothetical protein CT398 SWALL:O84403 (EMBL:AE001313) (254 aa) fasta scores: E(): 1.5e-06, 23.16% id in 259 aa conserved hypothetical protein	Zn-ribbon protein, possibly nucleic acid-binding	similar to Zn-ribbon protein possibly nucleic acid-binding	Possibly nucleic acid-binding	protein of unknown function DUF164	uncharacterized ACR, superfamily identified by match to protein family HMM PF02591	Putative uncharacterized protein	conserved hypothetical protein	protein of unknown function DUF164 PFAM: protein of unknown function DUF164: (1.6e-13) KEGG: dra:DR0291 hypothetical protein, ev=9e-93, 71% identity	hypothetical protein	protein of unknown function DUF164	conserved hypothetical protein	hypothetical protein	Zn-ribbon protein, possibly nucleic acid-binding	Hypothetical protein	Zn binding protein	conserved hypothetical protein	conserved hypothetical protein	protein of unknown function DUF164 PFAM: protein of unknown function DUF164 KEGG: aba:Acid345_4769 protein of unknown function DUF164	conserved hypothetical protein identified by match to protein family HMM PF02591	Hypothetical protein	conserved hypothetical protein	conserved hypothetical protein Specificity unclear	

CHLTR00408	Uncharacterized protein CT_399	YrbH protein	Putative sugar isomerase (Sis) protein	Similar to putative isomerase YrbH of Escherichia coli	Similar to arabinose 5-phosphate isomerase hypothetical protein	conserved gene polysialic acid capsule expression protein	Similar to arabinose 5-phosphate isomerase hypothetical protein	hypothetical protein	identified by similarity to SP:P45395; match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 arabinose 5-phosphate isomerase	Probable KpsF/GutQ family protein	Polysialic acid capsule expression protein	identified by similarity to EGAD:20643; match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 arabinose-5-phosphate isomerase	Polysialic acid capsule expression protein	Sugar phosphate isomerase involved in capsule formation	Similar to Chlamydia muridarum hypothetical protein Tc0679 tc0679 SWALL:Y679_CHLMU (SWALL:Q9PJZ7) (328 aa) fasta scores: E(): 3.4e-89, 67.17% id in 329 aa and Yersinia pestis arabinose 5-phosphate isomerase kdsd or ypo3577 or y0149 or yp3832 SWALL:Q8ZB48 (EMBL:AJ414157) (328 aa) fasta scores: E(): 1.3e-32, 35.22% id in 318 aa conserved hypothetical protein	Putative uncharacterized protein	similar to BRA0073, sugar isomerase, KpsF/GutQ sugar isomerase, KpsF/GutQ	Polysialic acid capsule expression protein	Polysialic acid capsule expression protein	Hypothetical protein JHP1324	Putative uncharacterized protein	Hypothetical protein	Citation: Tzeng et al. (2002) J. Biol. Chem 277(27):24103-24113. putative polysialic acid capsule expression protein KpsF	Evidence 2b : Function of strongly homologous gene; Product type e : enzyme D-arabinose 5-phosphate isomerase	Sugar isomerase, KpsF/GutQ	with CBS domain; COG0794 conserved hypothetical protein	Similar to: HI1678, YG78_HAEIN probable phosphosugar isomerase HI1678	Predicted sugar phosphate isomerase involved in capsule formation GutQ protein	Similar to Q8KLW6 Hypothetical protein from Pseudomonas stutzeri (Pseudomonas perfectomarina) (324 aa).  FASTA: opt: 1095 Z-score: 1307.1 E(): 6.5e-65 Smith-Waterman score: 1095; 54.489 identity in 323 aa overlap. Homologs are involved in sialic acid capsule biosynthesis in some pathogenic strains of Escherichia coli. arabinose phosphate isomerase	
CHLTR00409	Dihydrolipoamide Succinyltransferase	identified by similarity to EGAD:13011; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817 2-oxoisovalerate dehydrogenase, E2 component, dihydrolipoamide acetyltransferase	Branched-chain alpha-keto acid dehydrogenase E2	InterProMatches:IPR003016 branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase)	lipoamide acyltransferase branched-chain alpha-keto acid dehydrogenase E2 component	Similar to Chlamydia pneumoniae dihydrolipoamide succinyltransferase SucB_2 or cpn0527 SWALL:Q9Z825 (EMBL:AE001637) (393 aa) fasta scores: E(): 9.4e-111, 76.84% id in 393 aa, and to Bacillus subtilis lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex BfmBb SWALL:ODB2_BACSU (SWALL:P37942) (424 aa) fasta scores: E(): 1.2e-27, 35.49% id in 417 aa putative lipoyl transferase protein	branched-chain alpha-keto acid dehydrogenase E2	Ortholog of S. aureus MRSA252 (BX571856) SAR1593 lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex	branched-chain alpha-keto acid dehydrogenase E2	identified by similarity to SP:P37942; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase	Similar to Bacillus subtilis lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex BfmB SWALL:ODB2_BACSU (SWALL:P37942) (424 aa) fasta scores: E(): 1.6e-33, 34.64% id in 459 aa, and to Streptomyces seoulensis dihydrolipoamide acetyltransferase PdhB SWALL:Q9Z6I4 (EMBL:AF047034) (612 aa) fasta scores: E(): 1.3e-48, 41.3% id in 477 aa putative lipoamide acyltransferase	possible dihydrolipoamide acetyltransferase	branched-chain alpha-keto acid dehydrogenase E2	Similar to Bacillus subtilis lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex BfmB SW:ODB2_BACSU (P37942) (424 aa) fasta scores: E(): 4.5e-80, 55.220% id in 431 aa, and to Bacillus halodurans branched-chain alpha-keto acid dehydrogenase E2 BH2761 TR:Q9K989 (EMBL:AP001516) (426 aa) fasta scores: E(): 3.4e-80, 55.172% id in 435 aa lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex	identified by similarity to EGAD:13011; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817 2-oxoisovalerate dehydrogenase, E2 component, dihydrolipoamide acetyltransferase	similar to gi|57284658|gb|AAW36752.1| [Staphylococcus aureus subsp. aureus COL], percent identity 70 in 430 aa, BLASTP E(): e-167 lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex	2-oxoisovalerate dehydrogenase, E2 component, dihydrolipoamide acetyltransferase identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817	branched-chain alpha-keto acid dehydrogenase E2	2-oxoglutarate dehydrogenase dihydrolipoyltranssuccinase E2 component EC2.3.1.61	Dihydrolipoamide S-succinyltransferase	catalytic domain of components of various dehydrogenase complexes PFAM: biotin/lipoyl attachment catalytic domain of components of various dehydrogenase complexes E3 binding KEGG: sth:STH2160 branched-chain alpha-keto acid dehydrogenase E2	2-oxoisovalerate dehydrogenase, E2 component, dihydrolipoamide acetyltransferase, putative	lipoamide acyltransferase component of 2-oxoacid dehydrogenase complex	dihydrolipoamide acetyltransferase	Dihydrolipoyllysine-residue succinyltransferase PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein KEGG: aba:Acid345_4350 dihydrolipoamide S-succinyltransferase	Dihydrolipoyllysine-residue succinyltransferase PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein KEGG: sme:SMb20019 putative dihydrolipoamide succinyltransferase protein	lipoamide acyltransferase component (E2) of branched-chain alpha-keto acid dehydrogenase complex	Complete genome	Dihydrolipoamide acetyltransferase	
CHLTR00410	Glutamate Symport	Similar to Chlamydia pneumoniae glutamate symport GltT or cpn0528 or cp0224 SWALL:Q9Z824 (EMBL:AE001637) (414 aa) fasta scores: E(): 3.2e-130, 83.01% id in 418 aa, and to Bacillus caldotenax proton/sodium-glutamate symport protein GltT SWALL:GLTT_BACCA (SWALL:P24944) (421 aa) fasta scores: E(): 4.9e-45, 34.8% id in 408 aa putative symport protein	sodium:dicarboxylate symporter family protein	Na+/H+-dicarboxylate symporters	similar to gi|52784356|ref|YP_090185.1| [Bacillus licheniformis ATCC 14580], percent identity 55 in 415 aa, BLASTP E(): e-117 putative proton glutamate symporter	transcript_id=ENSOCUT00000002572	Sodium:dicarboxylate symporter	glutamate symporter sodium:dicarboxylate symporter family	Sodium:dicarboxylate symporter precursor	transcript_id=ENSGACT00000005210	Sodium:dicarboxylate symporter	Na+/H+-dicarboxylate symporters-like protein	sodium:dicarboxylate symporter PFAM: sodium:dicarboxylate symporter KEGG: bur:Bcep18194_A3732 sodium-dicarboxylate symporter	transcript_id=ENSEEUT00000002666	transcript_id=ENSSTOT00000011470	sodium:dicarboxylate symporter PFAM: sodium:dicarboxylate symporter KEGG: bcn:Bcen_0163 sodium:dicarboxylate symporter	proton/sodium-glutamate symport protein	Proton/glutamate symporter	sodium:dicarboxylate symporter PFAM: sodium:dicarboxylate symporter KEGG: son:SO0922 proton/glutamate symporter	H(+)/sodium-glutamate symporter	Sodium:dicarboxylate symporter	proton/sodium-glutamate symport protein	Sodium:dicarboxylate symporter	Proton/sodium-glutamate symport protein	Sodium:dicarboxylate symporter precursor	transcript_id=ENSMICT00000000030	Na+/H+-dicarboxylate symporter	KEGG: slo:Shew_0743 sodium:dicarboxylate symporter sodium:dicarboxylate symporter	Proton/sodium-glutamate symport protein	
CHLTR00411	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Similar to tetraacyldisaccharide 4'-kinase hypothetical protein	conserved gene tetraacyl disaccharide 4'-kinase	Similar to tetraacyldisaccharide 4'-kinase hypothetical protein	identified by similarity to SP:P27300; match to protein family HMM PF02606; match to protein family HMM TIGR00682 tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark lipid A 4'-kinase	IPR003758: Tetraacyldisaccharide-1-P 4'-kinase tetraacyldisaccharide 4' kinase (lipid A 4'kinase)	similar to Salmonella typhi CT18 tetraacyldisaccharide 4'-kinase tetraacyldisaccharide 4'-kinase	Similar to Chlamydia pneumoniae tetraacyldisaccharide 4'-kinase LpxK or cpn0529 or cp0223 SWALL:LPXK_CHLPN (SWALL:Q9Z823) (365 aa) fasta scores: E(): 2.3e-86, 60.1% id in 366 aa, and to Francisella novicida tetraacyldisaccharide 4'-kinase LpxK or ValB SWALL:LPXK_FRANO (SWALL:Q47909) (322 aa) fasta scores: E(): 1.1e-18, 30.66% id in 300 aa putative tetraacyldisaccharide 4'-kinase	similar to BRA0216, tetraacyldisaccharide 4-kinase LpxK, tetraacyldisaccharide 4-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Putative tetraacyldisaccharide kinase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)	Tetraacyldisaccharide 4'-kinase	tetraacyldisaccharide 4'-kinase	lipid A 4'-kinase; Similar to: HI0059, LPXK_HAEIN tetraacyldisaccharide 4'-kinase	Lipid A biosynthesis protein LpxK, tetraacyldisaccharide-1-P 4'-kinase LpxK protein	Similar to LPXK_FRANO (Q47909) Tetraacyldisaccharide 4'-kinase from Francisella novicida (322 aa). FASTA: opt: 2072 Z-score: 2504.0 E(): 1.4e-131 Smith-Waterman score: 2072; 99.068 identity in 322 aa overlap (1-322:1-322).  Similar to Q87YF5 Tetraacyldisaccharide 4'-kinase from Pseudomonas syringae (pv. tomato) (331 aa). FASTA: opt: 631 Z-score: 764.2 E(): 1.1e-34 Smith-Waterman score: 728; 37.421 identity in 318 aa overlap. Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide-1-P 4'-kinase	Tetraacyldisaccharide 4'-kinase	tetraacyldisaccharide 4'-kinase	lipid A 4'-kinase	
CHLTR00411	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Similar to tetraacyldisaccharide 4'-kinase hypothetical protein	conserved gene tetraacyl disaccharide 4'-kinase	Similar to tetraacyldisaccharide 4'-kinase hypothetical protein	identified by similarity to SP:P27300; match to protein family HMM PF02606; match to protein family HMM TIGR00682 tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark lipid A 4'-kinase	IPR003758: Tetraacyldisaccharide-1-P 4'-kinase tetraacyldisaccharide 4' kinase (lipid A 4'kinase)	similar to Salmonella typhi CT18 tetraacyldisaccharide 4'-kinase tetraacyldisaccharide 4'-kinase	Similar to Chlamydia pneumoniae tetraacyldisaccharide 4'-kinase LpxK or cpn0529 or cp0223 SWALL:LPXK_CHLPN (SWALL:Q9Z823) (365 aa) fasta scores: E(): 2.3e-86, 60.1% id in 366 aa, and to Francisella novicida tetraacyldisaccharide 4'-kinase LpxK or ValB SWALL:LPXK_FRANO (SWALL:Q47909) (322 aa) fasta scores: E(): 1.1e-18, 30.66% id in 300 aa putative tetraacyldisaccharide 4'-kinase	similar to BRA0216, tetraacyldisaccharide 4-kinase LpxK, tetraacyldisaccharide 4-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Putative tetraacyldisaccharide kinase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)	Tetraacyldisaccharide 4'-kinase	tetraacyldisaccharide 4'-kinase	lipid A 4'-kinase; Similar to: HI0059, LPXK_HAEIN tetraacyldisaccharide 4'-kinase	Lipid A biosynthesis protein LpxK, tetraacyldisaccharide-1-P 4'-kinase LpxK protein	Similar to LPXK_FRANO (Q47909) Tetraacyldisaccharide 4'-kinase from Francisella novicida (322 aa). FASTA: opt: 2072 Z-score: 2504.0 E(): 1.4e-131 Smith-Waterman score: 2072; 99.068 identity in 322 aa overlap (1-322:1-322).  Similar to Q87YF5 Tetraacyldisaccharide 4'-kinase from Pseudomonas syringae (pv. tomato) (331 aa). FASTA: opt: 631 Z-score: 764.2 E(): 1.1e-34 Smith-Waterman score: 728; 37.421 identity in 318 aa overlap. Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide-1-P 4'-kinase	Tetraacyldisaccharide 4'-kinase	tetraacyldisaccharide 4'-kinase	lipid A 4'-kinase	
CHLTR00412	RRNA Methylase	rRNA methylase	23S rRNA methyltransferase	probable tRNA/rRNA methyltransferase	rRNA methyltransferase	RRNA methylase	RRNA methylase	rRNA methylase protein	Possible 23S rRNA methyltransferase tsnR	Mb1671, tsnR, len: 260 aa. Equivalent to Rv1644, len: 260 aa, from Mycobacterium tuberculosis strain H37Rv, (99.6% identity in 260 aa overlap). Possible tsnR, 23S rRNA methyltransferase (EC 2.1.1.-), similar to several e.g. TSNR_STRLU|P52393 from Streptomyces laurentii (270 aa), FASTA scores: opt: 276, E(): 3.6e-11, (27.6% identity in 261 aa overlap). Also similar to M. tuberculosis hypothetical proteins Rv0881, Rv3579c, and Rv0380c. Possible 23S rRNA methyltransferase tsnR	23S rRNA methyltransferase	23S rRNA (guanosine-2'-O-)-methyltransferase rlmB	RNA 2'-O ribose methyltransferase	TRNA/rRNA methyltransferase	Similar to Chlamydia pneumoniae rRNA methylase Spou_1 or cpn0530 or cp0222 SWALL:Q9Z822 (EMBL:AE001638) (265 aa) fasta scores: E(): 7.5e-70, 62.73% id in 263 aa, and to Streptomyces viridochromogenes rRNA methyltransferase avirB SWALL:Q9F5K6 (EMBL:AF333038) (287 aa) fasta scores: E(): 3.9e-15, 29.6% id in 277 aa putative rRNA methylase 4.2.3	Putative uncharacterized protein gbs1655	23S rRNA methyltransferase	best blastp match gb|AAK33402.1| (AE006499) putative rRNA methylase [Streptococcus pyogenes M1 GAS] putative rRNA methylase	identified by match to protein family HMM PF00588 RNA methyltransferase, TrmH family	COG0566 rRNA methylase	Similar to Q891T6 23S rRNA methyltransferase (EC 2.1.1.-) from Clostridium tetani (260 aa). FASTA: opt: 442 Z-score: 545.7 E(): 1.7e-22 Smith-Waterman score: 442; 34.091 identity in 264 aa overlap. ORF ftt1108 rRNA methyltransferase	rRNA methyltransferase	tRNA/rRNA methyltransferase	putative rRNA methylase	tRNA/rRNA methyltransferase (SpoU)	putative rRNA methylase	23S rRNA methyltransferase	tRNA/rRNA methyltransferase	similar to gi|27467748|ref|NP_764385.1| [Staphylococcus epidermidis ATCC 12228], percent identity 74 in 246 aa, BLASTP E(): e-101 rRNA methylase	
CHLTR00413	SAM dependent methyltransferase	COG1092 SAM-dependent methyltransferases	SAM-dependent methyltransferase	conserved hypothetical protein similarity:fasta; with=UniProt:Q92KR7 (EMBL:SME591783); Rhizobium meliloti (Sinorhizobium meliloti).; Hypothetical protein SMc01131.; length=384; id 72.527; 364 aa overlap; query 2-365; subject 27-384	tRNA/rRNA methyltransferase EC 2.1.1.-	probable SAM-dependent methyltransferase protein Putative location:bacterial inner membrane Psort-Score: 0.1001 similar to BR0151 [Brucella suis 1330] and AGR_C_592p [Agrobacterium tumefaciens] Similar to swissprot:Q8G306; go_function: transferase activity [goid 0016740]; go_function: methyltransferase activity [goid 0008168]	Hypothetical protein	SAM-dependent methyltransferase COG1092 Predicted SAM-dependent methyltransferases	SAM dependent methyltransferase cytoplasmic protein	possible oxidoreductase	SAM dependent methyltransferase cytoplasmic protein	N6-adenine-specific DNA methylase	Putative SAM-dependent methyltransferase	conserved hypothetical protein	Hypothetical protein	conserved hypothetical protein 95 PFAM: conserved hypothetical protein 95 KEGG: mlo:mlr3209 SAM dependent methyltransferase	SAM-dependent methyltransferase	Putative uncharacterized protein	Putative SAM-dependent methyltransferase	Putative uncharacterized protein	SAM-dependent methyltransferase-like protein	Putative uncharacterized protein	methyltransferase hypothetical protein	N6-adenine-specific DNA methylase	Putative uncharacterized protein	N6-adenine-specific DNA methylase	SAM dependent methyltransferase	Putative SAM dependent methyltransferase	Putative uncharacterized protein	
CHLTR00414	Riboflavin synthase alpha chain	Riboflavin synthase alpha chain family lumazine binding domain	riboflavin synthase, alpha subunit	Riboflavin synthase alpha chain	RibE protein	Probable riboflavin synthase (Alpha chain) protein	Riboflavin synthase alpha chain	Riboflavin synthase alpha chain	conserved gene riboflavin synthase, alpha subunit RibE	Riboflavin synthase alpha chain	pseudo	identified by similarity to EGAD:41143; match to protein family HMM PF00677; match to protein family HMM TIGR00187 riboflavin synthase, alpha subunit	riboflavin synthase alpha chain	identified by similarity to SP:P51961; match to protein family HMM PF00677; match to protein family HMM TIGR00187 riboflavin synthase, alpha subunit	Riboflavin synthase alpha chain	Riboflavin synthase alpha chain	Riboflavin synthase alpha chain	identified by match to protein family HMM PF00677; match to protein family HMM TIGR00187 riboflavin synthase, alpha subunit	RibC	Riboflavin synthase	Riboflavin synthase alpha chain	Mb1447, ribC, len: 201 aa. Equivalent to Rv1412, len: 201 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 201 aa overlap). Probable ribC (ribE), Riboflavin synthase alpha chain (EC 2.5.1.9), strong similarity to others e.g. RISA_ACTPL|P50854 (215 aa), FASTA scores: opt: 586, E(): 1.8e-33, (50.8% identity in 197 aa overlap). Contains 2 x PS00693 Riboflavin synthase alpha chain family signature. PROBABLE RIBOFLAVIN SYNTHASE ALPHA CHAIN RIBC (RIBE)	InterProMatches:IPR001783 riboflavin synthase (alpha subunit)	riboflavin synthase alpha subunit RibB	Riboflavin synthase alpha chain	Riboflavin synthase alpha chain	Ribiflavin synthase alpha chain	IPR001783: Lumazine-binding protein riboflavin synthase, alpha chain	Riboflavin synthase alpha chain	
CHLTR00415	Transcriptional repressor nrdR	Transcriptional repressor nrdR	Transcriptional repressor nrdR	Transcriptional repressor nrdR	Transcriptional repressor nrdR	similar to unknown proteins hypothetical protein	conserved gene ATP cone and Zn ribbon domains protein	similar to unknown proteins hypothetical protein	Transcriptional repressor nrdR	identified by match to protein family HMM PF02644; match to protein family HMM PF03477; match to protein family HMM TIGR00244 conserved hypothetical protein TIGR00244	Putative regulatory protein	hypothetical protein	identified by similarity to GB:BAC44848.1; match to protein family HMM PF03477; match to protein family HMM TIGR00244 riboflavin biosynthesis protein RibX	Transcriptional repressor nrdR	conserved hypothetical protein	Transcriptional repressor nrdR	Hypothetical UPF0168 protein SE1360	Transcriptional repressor nrdR	Transcriptional repressor nrdR	Putative uncharacterized protein	Transcriptional repressor nrdR	Mb2737c, -, len: 154 aa. Equivalent to Rv2718c, len: 154 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 154 aa overlap). Conserved hypothetical protein, equivalent to Q49844|ML1005|U2235A|B2235_C2_209 HYPOTHETICAL 17.3 KDA PROTEIN from Mycobacterium leprae (154 aa), FASTA scores: opt: 937, E(): 1.5e-52, (92.7% identity in 151 aa overlap). Highly similar to O86848|NRDR_STRCL PUTATIVE REGULATORY PROTEIN from Streptomyces clavuligerus (172 aa), FASTA scores: opt: 750, E(): 1.1e-40, (73.65% identity in 148 aa overlap); O69980|SC4H2.25 HYPOTHETICAL PROTEIN from Streptomyces coelicolor (182 aa), FASTA scores: opt: 725, E(): 4.6e-39, (73.1% identity in 145 aa overlap); Q9KPU0|VC2272 HYPOTHETICAL PROTEIN from Vibrio cholerae (156 aa), FASTA scores: opt: 462, E(): 1.8e-22, (47.3% identity in 148 aa overlap); etc. CONSERVED HYPOTHETICAL PROTEIN	putative transcriptional regulator	transcriptional regulator	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	hypothetical protein putative transcriptional regulator	Transcriptional repressor nrdR	Transcriptional repressor nrdR	putative transcriptional regulator	
CHLTR00416	DnaK Suppressor	identified by similarity to SP:P18274; match to protein family HMM PF01258 dnaK suppressor protein, putative	DnaK suppressor protein	Zn-finger protein	general stress protein GSP160	Similar to Chlamydia pneumoniae DnaK suppressor DksA or cpn0534 SWALL:Q9Z818 (EMBL:AE001638) (124 aa) fasta scores: E(): 6e-41, 92.74% id in 124 aa, and to Chlamydia pneumoniae hypothetical protein Cp0218 cp0218 SWALL:Q9K2C0 (EMBL:AE002183) (132 aa) fasta scores: E(): 1.6e-40, 91.93% id in 124 aa conserved hypothetical protein	DnaK suppressor protein	Putative DnaK suppressor protein	Similar to sp|O32347|DKSA_CAUCR rc||dksA rp||dksA; Ortholog to ERGA_CDS_00330 DNAK suppressor protein homolog	COG1734 DksA DnaK suppressor protein dnaK suppressor protein	DnaK suppressor protein	Similar to sp|O32347|DKSA_CAUCR rc||dksA rp||dksA; Ortholog to ERWE_CDS_00340 DNAK suppressor protein homolog	identified by similarity to SP:P18274; similarity to GB:AAF85762.1; match to protein family HMM PF01258; match to protein family HMM TIGR02420 RNA polymerase-binding protein DksA, putative	Zn-finger, prokaryotic DksA/TraR C4 type	Best Blastp Hit: gb|AAF40525.1| (AE002364) DnaK suppressor protein [Neisseria meningitidis MC58] COG1734 DnaK suppressor protein DskA putative dosage-dependent DnaK suppressor protein	dnaK suppressor protein	COG1734, DksA, DnaK suppressor protein (Signal transduction mechanisms). pfam01258, prokaryotic dksA/traR C4-type zinc finger. this gene and others in the pfam and COG do not contain the zinc finger but still have significant similarity. DnaK suppressor protein, DksA family	transcriptional regulators, TraR/DksA family	putative dnaK suppressor protein	putative RNA polymerase-binding protein DksA	transcriptional regulators, TraR/DksA family	Transcriptional regulators, TraR/DksA family	transcriptional regulators, TraR/DksA family	transcriptional regulators, TraR/DksA family	DnaK suppressor protein COG1734	dnaK suppressor	Transcriptional regulators, TraR/DksA family	transcriptional regulators, TraR/DksA family	transcriptional regulators, TraR/DksA family	
CHLTR00417	Lipoprotein signal peptidase	Lipoprotein signal peptidase	Lipoprotein signal peptidase	conserved gene lipoprotein signal peptidase	Lipoprotein signal peptidase	identified by similarity to EGAD:101825; match to protein family HMM PF01252; match to protein family HMM TIGR00077 lipoprotein signal peptidase	Lipoprotein signal peptidase	Lipoprotein signal peptidase	Lipoprotein signal peptidase	Similar to Chlamydia pneumoniae lipoprotein signal peptidase LspA or cpn0535 or cp0217 SWALL:LSPA_CHLPN (SWALL:Q9Z817) (168 aa) fasta scores: E(): 1.7e-33, 63.56% id in 129 aa, and to Escherichia coli lipoprotein signal peptidase LspA SWALL:BAB96596 (EMBL:X00776) (164 aa) fasta scores: E(): 1.2e-05, 33.63% id in 110 aa putative lipoprotein signal peptidase	similar to BR0149, lipoprotein signal peptidase LspA, lipoprotein signal peptidase	lipoprotein signal peptidase	Lipoprotein signal peptidase	Ortholog of S. aureus MRSA252 (BX571856) SAR1172 lipoprotein signal peptidase	lipoprotein signal peptidase	identified by similarity to SP:Q45479; match to protein family HMM PF01252; match to protein family HMM TIGR00077 lipoprotein signal peptidase	Similar to CAD85059 Signal peptidase II/lipoprotein signal peptidase family from Nitrosomonas europaea (160 aa). FASTA: opt: 475 Z-score: 613.4 E(): 2.6e-26 Smith-Waterman score: 475; 48.649identity in 148 aa overlap. lipoprotein signal peptidase II	Lipoprotein signal peptidase (Prolipoprotein signal peptidase)	SPase II; ortholog to Escherichia coli bnum: b0027; MultiFun: Cell structure 6.1; Information transfer 2.3.5; Transport 4.S.160 prolipoprotein signal peptidase	identified by similarity to SP:Q45479; match to protein family HMM TIGR00077 lipoprotein signal peptidase	Similar to Staphylococcus aureus lipoprotein signal peptidase LspA SW:LSPA_STAAU (P31024) (163 aa) fasta scores: E(): 4.5e-57, 98.773% id in 163 aa, and to Bacillus subtilis lipoprotein signal peptidase LspA SW:LSPA_BACSU (Q45479) (154 aa) fasta scores: E(): 2.9e-24, 48.000% id in 150 aa lipoprotein signal peptidase	identified by match to protein family HMM PF01252; match to protein family HMM TIGR00077 signal peptidase II	similar to gi|27467789|ref|NP_764426.1| [Staphylococcus epidermidis ATCC 12228], percent identity 77 in 153 aa, BLASTP E(): 5e-65 lipoprotein signal peptidase	Signal peptidase II, family A8	Lipoprotein signal peptidase	lipoprotein signal peptidase identified by match to protein family HMM PF01252; match to protein family HMM TIGR00077	lipoprotein signal peptidase	lipoprotein signal peptidase EC 3.4.23.36	lipoprotein signal peptidase	
CHLTR00418	Amino acid permease	Putative amino-acid transport protein	Similar to: HI0183, YAAJ_HAEIN putative Na+/alanine symporter	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 amino acid carrier protein	Best Blastp Hit: pir||G81227 probable amino-acid transport protein NMA0073 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225414|gb|AAF40651.1| (AE002376) amino acid symporter, putative [Neisseria meningitidis MC58] >gi|7378846|emb|CAB83389.1| (AL162752) putative amino-acid transport protein [Neisseria meningitidis] COG1115 Sodium-alanine symporters putative amino-acid transport protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type t : transporter putative sodium:alanine symporter	amino acid carrier protein	Na+/alanine symporter COG1115	D-alanine/glycine permease	Amino acid carrier protein	sodium/alanine symporter family protein identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835	Amino acid carrier protein	Amino acid carrier protein	sodium:alanine symporter family protein identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835	amino acid carrier protein TIGRFAM: amino acid carrier protein PFAM: sodium:alanine symporter KEGG: sme:SMc04263 putative amino acid carrier transmembrane protein	amino acid carrier protein TIGRFAM: amino acid carrier protein PFAM: sodium:alanine symporter KEGG: sme:SMc04263 putative amino acid carrier transmembrane protein	amino acid carrier protein identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835	amino acid carrier protein TIGRFAM: amino acid carrier protein PFAM: sodium:alanine symporter KEGG: dps:DP1274 probable sodium/alanine symporter	Na(+)-linked D-alanine glycine permease	amino acid carrier protein TIGRFAM: amino acid carrier protein PFAM: sodium:alanine symporter KEGG: son:SO3541 sodium:alanine symporter family protein	putative sodium:amino acid symporter	Probable AGCS sodium/alanine/glycine symporter	putative sodium/alanine symporter	Amino acid carrier protein	Putative inner membrane amino-acid transport protein	sodium/alanine symporter KEGG: noc:Noc_2711 sodium/alanine symporter	Amino acid carrier protein	KEGG: slo:Shew_1092 amino acid carrier protein amino acid carrier protein	Amino acid carrier protein	
CHLTR00419	PolyA Polymerase	Similar to Neisseria meningitidis putative poly(A) polymerase PcnB or NMA1053 SWALL:Q9JV08 (EMBL:AL162755) (453 aa) fasta scores: E(): 9.7e-34, 30.8% id in 409 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 poly(A) polymerase PcnB or B0143 or C0176 or Z0154 or ECS0147 SWALL:PCNB_ECOLI (SWALL:P13685) (472 aa) fasta scores: E(): 2.3e-20, 33.33% id in 423 aa putative poly(A) polymerase	polynucleotide adenyltransferase	Poly(A) polymerase	Poly(A) polymerase	Poly (A) polymerase EC 2.7.7.19	Poly(A) polymerase	TRNA nucleotidyltransferase	poly(A) polymerase identified by match to protein family HMM PF01743; match to protein family HMM TIGR01942	poly(A) polymerase I COG_category H;COG_number COG1488; PcnB	polyA polymerase tRNA nucleotidyltransferase	TRNA adenylyltransferase	tRNA nucleotidyltransferase	TRNA nucleotidyltransferase/poly(A) polymerase family protein	Poly(A) polymerase	tRNA nucleotidyltransferase/poly(A) polymerase family protein	Poly(A) polymerase	Poly(A) polymerase	Poly(A) polymerase	Polynucleotide adenyltransferase	Polynucleotide adenylyltransferase/metal dependent phosphohydrolase	PolyA polymerase	PolyA polymerase	Poly(A) polymerase	Poly(A) polymerase	PolyA polymerase	Poly(A) polymerase	Polynucleotide adenyltransferase	CCA-adding enzyme	
CHLTR00420	Lipid-A-disaccharide synthase	Similar to Chlamydophila caviae lipid-A-disaccharide synthase LpxB or CCA00792 SWALL:Q821Z3 (EMBL:AE016997) (626 aa) fasta scores: E(): 2e-208, 78.56% id in 625 aa, and to Escherichia coli lipid-A-disaccharide synthase LpxB or PgsB or B0182 SWALL:LPXB_ECOLI (SWALL:P10441) (382 aa) fasta scores: E(): 1.3e-24, 31.14% id in 366 aa putative lipid-A-disaccharide synthase	Glycosyl transferase, family 19	lipid-A-disaccharide synthetase identified by match to protein family HMM PF02684; match to protein family HMM TIGR00215	lipid-A-disaccharide synthase identified by match to protein family HMM PF02684; match to protein family HMM TIGR00215	lipid-A-disaccharide synthase	lipid-A-disaccharide synthase EC 2.4.1.182	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	lipid-A-disaccharide synthase	lipid-A-disaccharide synthase	Glycosyltransferase of family GT19; possible lipid A disaccharide synthase	lipid-A-disaccharide synthase TIGRFAM: lipid-A-disaccharide synthase PFAM: glycosyl transferase, family 19 KEGG: mlo:mll0630 lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	
CHLTR00421	Probable outer membrane protein pmpA	polymorphic outer membrane protein A Family	polymorphic outer membrane protein	Polymorphic outer membrane protein	Polymorphic outer membrane protein	Polymorphic outer membrane protein	
CHLTR00422	Probable outer membrane protein pmpB	Similar to Chlamydia muridarum probable outer membrane protein PmpB precursor or tc0694 SWALL:PMPB_CHLMU (SWALL:Q9PJY2) (1672 aa) fasta scores: E(): 3.1e-148, 44.7% id in 1859 aa, and to Chlamydia trachomatis probable outer membrane protein PmpB precursor or ct413 SWALL:PMPB_CHLTR (SWALL:O84418) (1754 aa) fasta scores: E(): 1.5e-132, 42.62% id in 1933 aa, and to Chlamydia pneumoniae probable outer membrane protein Pmp20 precursor or cpn0540 or cp0212 SWALL:PM20_CHLPN (SWALL:Q9Z812) (1723 aa) fasta scores: E(): 2.5e-120, 44.59% id in 1868 aa, and to Chlamydia psittaci putative polymorphic membrane protein SWALL:Q8VL57 (EMBL:AF243416) (601 aa) fasta scores: E(): 1.6e-14, 27.06% id in 665 aa, and to Chlamydophila abortus Pomp91b precursor SWALL:P71133 (EMBL:U65943) (846 aa) fasta scores: E(): 7.6e-12, 26.18% id in 905 aa polymorphic outer membrane protein	similar to BRA0173, identified by sequence similarity to BRA0173; GB:AAL54311.1; outermembrane transporter contains authentic frame shift resuting in a truncation relative to BRA0173 outermembrane transporter	ORF28 unknown	Outer membrane autotransporter barrel domain	polymorphic outer membrane protein B	Hep_Hag family protein/haemagluttinin motif family protein/YadA-like domain protein identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662	Outer membrane autotransporter barrel	outer membrane protein, putative identified by match to protein family HMM PF05658; match to protein family HMM PF05662	polymorphic outer membrane protein	Platelet-binding glycoprotein	PPE family protein PPE8; membrane protein	Hypothetical protein	hypothetical protein	predicted protein	Outer membrane autotransporter barrel domain protein precursor	Outer membrane autotransporter barrel domain precursor	Autotransporter-associated beta strand repeat protein precursor	YadA domain protein	Polymorphic outer membrane protein	Polymorphic outer membrane protein	Autotransporter-associated beta strand repeat protein precursor	PE-PGRS family protein	Haemagluttinin domain protein	Putative uncharacterized protein	Collagen triple helix repeat protein	Outer membrane autotransporter	Polymorphic outer membrane protein	
CHLTR00422	Probable outer membrane protein pmpB	Similar to Chlamydia muridarum probable outer membrane protein PmpB precursor or tc0694 SWALL:PMPB_CHLMU (SWALL:Q9PJY2) (1672 aa) fasta scores: E(): 3.1e-148, 44.7% id in 1859 aa, and to Chlamydia trachomatis probable outer membrane protein PmpB precursor or ct413 SWALL:PMPB_CHLTR (SWALL:O84418) (1754 aa) fasta scores: E(): 1.5e-132, 42.62% id in 1933 aa, and to Chlamydia pneumoniae probable outer membrane protein Pmp20 precursor or cpn0540 or cp0212 SWALL:PM20_CHLPN (SWALL:Q9Z812) (1723 aa) fasta scores: E(): 2.5e-120, 44.59% id in 1868 aa, and to Chlamydia psittaci putative polymorphic membrane protein SWALL:Q8VL57 (EMBL:AF243416) (601 aa) fasta scores: E(): 1.6e-14, 27.06% id in 665 aa, and to Chlamydophila abortus Pomp91b precursor SWALL:P71133 (EMBL:U65943) (846 aa) fasta scores: E(): 7.6e-12, 26.18% id in 905 aa polymorphic outer membrane protein	similar to BRA0173, identified by sequence similarity to BRA0173; GB:AAL54311.1; outermembrane transporter contains authentic frame shift resuting in a truncation relative to BRA0173 outermembrane transporter	ORF28 unknown	Outer membrane autotransporter barrel domain	polymorphic outer membrane protein B	Hep_Hag family protein/haemagluttinin motif family protein/YadA-like domain protein identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662	Outer membrane autotransporter barrel	outer membrane protein, putative identified by match to protein family HMM PF05658; match to protein family HMM PF05662	polymorphic outer membrane protein	Platelet-binding glycoprotein	PPE family protein PPE8; membrane protein	Hypothetical protein	hypothetical protein	predicted protein	Outer membrane autotransporter barrel domain protein precursor	Outer membrane autotransporter barrel domain precursor	Autotransporter-associated beta strand repeat protein precursor	YadA domain protein	Polymorphic outer membrane protein	Polymorphic outer membrane protein	Autotransporter-associated beta strand repeat protein precursor	PE-PGRS family protein	Haemagluttinin domain protein	Putative uncharacterized protein	Collagen triple helix repeat protein	Outer membrane autotransporter	Polymorphic outer membrane protein	
CHLTR00423	Probable outer membrane protein pmpC	YadA/Haemagluttinin like protein	transcript_id=ENSOGAT00000004518	Filamentous haemagglutinin , Adhesin	polymorphic outer membrane protein	Hypothetical protein SynWH7803_2393	Outer membrane autotransporter barrel domain	Streptococcal hemagglutinin	Surface-exposed protein	Surface-exposed protein	Haemagluttinin family protein	YadA domain protein	Polymorphic outer membrane protein precursor	Polymorphic outer membrane protein precursor	AAA ATPase containing von Willebrand factor type A (VWA) protein-like omain precursor	status:Predicted	status:Predicted	Putative uncharacterized protein	
CHLTR00424	Uncharacterized periplasmic metal-binding protein CT_415	Zn-binding lipoprotein adcA	identified by match to protein family HMM PF01297 cation ABC transporter, periplasmic cation-binding protein	Similar to Chlamydia pneumoniae putative periplasmic metal-binding protein precursor cpn0541 or cp0211 or cpj0541 SWALL:Y541_CHLPN (SWALL:Q9Z811) (278 aa) fasta scores: E(): 1.4e-67, 58.27% id in 278 aa, and to Bacillus subtilis manganese-binding lipoprotein MntA precursor SWALL:MNTA_BACSU (SWALL:O34385) (306 aa) fasta scores: E(): 1.6e-05, 26.69% id in 206 aa putative transport poprotein	Putative uncharacterized protein	Similar to sp|Q9RPX0|ZNUA_HAEDU sp|P39172|ZNUA_ECOLI sp|Q8ZEU2|ZNUA_YERPE sp|P44526|ZNUA_HAEIN; Ortholog to ERGA_CDS_02580 High-affinity zinc uptake system protein znuA	identified by similarity to GP:4249623; match to protein family HMM PF01297 laminin-binding surface protein, putative	COG0803 ZnuA ABC-type Mn/Zn transport system periplasmic Mn/Zn-binding (lipo)protein (surface adhesin) similar to NP_541155.1 high-affinity zinc uptake system protein	Putative Lipoprotein	high-affinity zinc uptake system protein ZnuA precursor	Similar to Streptococcus pyogenes, and Streptococcus pyogenes metal ABC transporter substrate-binding lipoprotein precursor MtsA or SPY0453 or SPYM3_0318 or SPS1539 SWALL:MTSA_STRPY (SWALL:Q9A157) (310 aa) fasta scores: E(): 1e-14, 27.11% id in 284 aa, and to Bacteroides thetaiotaomicron putative zinc ABC transporter, zinc-binding protein BT3249 SWALL:AAO78355 (EMBL:AE016939) (308 aa) fasta scores: E(): 1.6e-80, 75.17% id in 294 aa, and to Chlorobium tepidum adhesion protein, putative CT2106 SWALL:Q8KAQ0 (EMBL:AE012959) (344 aa) fasta scores: E(): 3.1e-34, 35.58% id in 281 aa putative metal ABC transporter substrate-binding precursor	Cation ABC transporter, periplasmic cation- binding protein, putative	Similar to sp|Q9RPX0|ZNUA_HAEDU sp|P39172|ZNUA_ECOLI sp|Q8ZEU2|ZNUA_YERPE sp|P44526|ZNUA_HAEIN; Ortholog to ERWE_CDS_02610 High-affinity zinc uptake system protein znuA	identified by match to protein family HMM PF01297 cation ABC transporter, periplasmic cation-binding protein	Periplasmic solute binding protein	Periplasmic solute binding protein	zinc ABC transporter, zinc-binding protein	Periplasmic solute binding protein	Periplasmic solute binding protein	Periplasmic solute binding protein	adhesion protein, putative	Zinc/manganese ABC transporter substrate binding protein	ABC transporter substrate binding protein COG0803 [P] ABC-type metal ion transport system, periplasmic component/surface adhesin	ABC transporter/periplasmic Mn/Zn-binding protein surface adhesin A	Twin-arginine translocation pathway signal	putative cation ABC transporter, periplasmic cation-binding protein identified by similarity to SP:P39172; match to protein family HMM PF01297	Cation ABC transporter, periplasmc-binding protein	putative cation ABC transporter, periplasmic cation-binding protein identified by similarity to SP:P39172; match to protein family HMM PF01297	periplasmic solute binding protein	
CHLTR00425	Probable metal transport system ATP-binding protein CT_416	Metal transporter, ATP-binding component precursor	Metal transporter, ATP-binding component precursor	Putative uncharacterized protein	Metal transporter, ATP-binding component	
CHLTR00427	GTPase obg	GTPase obg	GTPase obg	GTPase obg	Obg	GTP-binding protein	GTPase obg	GTPase obg	Similar to Legionella essential GTPase hypothetical protein	conserved gene GTP-binding protein, GTP1/Obg family	Similar to Legionella essential GTPase hypothetical protein	GTPase obg	identified by match to protein family HMM PF01018; match to protein family HMM TIGR00231 GTP-binding protein, GTP1/OBG family	GTPase obg	GTP-binding protein; probably involved in DNA repair CgtA	GTP-binding protein	identified by similarity to SP:P42641; match to protein family HMM PF01018; match to protein family HMM TIGR00231 GTP-binding protein, GTP1/OBG family	GTPase obg	GTP-binding protein, GTP1/Obg family	GTPase obg	Spo0B-associated GTP-binding protein	GTP-binding protein Obg	GTPase obg	identified by match to protein family HMM PF01018 GTP-binding protein, GTP1/Obg family	GTP-binding protein Obg/CgtA	GTPase obg	Mb2467c, obg, len: 479 aa. Equivalent to Rv2440c, len: 479 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 479 aa overlap). Probable obg, nucleotide-binding protein, equivalent to Q9CBZ4|ML1465 GTP1/OBG-FAMILY GTP-BINDING PROTEIN from Mycobacterium leprae (478 aa), FASTA scores: opt: 1328, E(): 8.4e-70, (58.9% identity in 479 aa overlap). Also highly similar to others e.g. P95722|OBG GTP-BINDING PROTEIN from Streptomyces coelicolor (478 aa), FASTA scores: opt: 1311, E(): 8.2e-69, (60.7% identity in 476 aa overlap); P20964|OBG_BACSU SPO0B-ASSOCIATED GTP-BINDING PROTEIN from Bacillus subtilis (428 aa), FASTA scores: opt: 1006, E(): 3.9e-51, (42.9% identity in 436 aa overlap); Q9KDK0|OBG|BH1213 GTP-BINDING PROTEIN INVOLVED IN INITIATION OF SPORULATION from Bacillus halodurans (427 aa), FASTA scores: opt: 978, E(): 1.7e-49, (41.95% identity in 436 aa overlap); etc. Highly similar (identical but shorter 5 aa) to AAK46813|MT2516 GTP-BINDING PROTEIN from Mycobacterium tuberculosis strain CDC1551 (484 aa), FASTA scores: opt: 3205, E(): 7.9e-179, (100% identity in 479 aa overlap). Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE GTP1/OBG FAMILY. PROBABLE GTP1/OBG-FAMILY GTP-BINDING PROTEIN OBG	InterProMatches:IPR005225; may be required to stimulate activity of the phosphorelay that activates Spo0A,Molecular Function: GTP binding (GO:0005525) GTPase Obg	Spo0B-associated GTP-binding protein	
CHLTR00426	Probable metal transport system membrane protein CT_417	Putative uncharacterized protein	Molecular Function: transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355) transcriptional regulator	metal ion ABC transporter permease	Similar to Chlamydia pneumoniae probable metal transport system membrane protein cpn0543 or cp0209 or cpj0543 SWALL:Y543_CHLPN (SWALL:Q9Z809) (293 aa) fasta scores: E(): 1.9e-82, 78.21% id in 280 aa, and to Listeria monocytogenes hydrophobic membrane protein ZurM SWALL:Q9XDA5 (EMBL:AF104349) (295 aa) fasta scores: E(): 2.6e-17, 23.77% id in 265 aa putative transport protein	Putative uncharacterized protein	hypothetical protein, similar to ABC transporter	Ortholog of S. aureus MRSA252 (BX571856) SAR1632 ABC transporter permease protein	Similar to Streptococcus mutans component of ABC transporter SloB SWALL:Q9KIJ4 (EMBL:AF232688) (279 aa) fasta scores: E(): 3.3e-25, 32.22% id in 270 aa, and to Bacteroides thetaiotaomicron zinc ABC transporter, permease BT2206 SWALL:AAO77313 (EMBL:AE016935) (269 aa) fasta scores: E(): 1.5e-84, 85.82% id in 268 aa, and to Methanosarcina mazei zinc ABC transporter, permease protein MM1335 SWALL:Q8PX87 (EMBL:AE013366) (274 aa) fasta scores: E(): 8.5e-45, 47.56% id in 267 aa putative ABC transporter membrane protein	Cation ABC transporter, permease protein, putative	ABC transporter, permease, family 3; possible zinc transporter	identified by match to protein family HMM PF00950 cation ABC transporter, permease protein	identified by similarity to GP:5019735 cation ABC transporter, permease protein	identified by match to protein family HMM PF00950 cation ABC transporter, permease protein	ABC-3	Previously sequenced as Staphylococcus aureus ABC transporter MreB TR:Q9LAP5 (EMBL:AF121672) (277 aa) fasta scores: E(): 2e-87, 100.000% id in 277 aa. Similar to Staphylococcus xylosus putative ABC transporter ZurM TR:Q9K4V5 (EMBL:AJ276960) (286 aa) fasta scores: E(): 7.2e-77, 82.807% id in 285 aa ABC transporter permease protein	ABC-type transport system permease protein (probable substrates zinc/manganese/metal ions) 2	cation ABC transporter, permease protein	identified by match to protein family HMM PF00950 ABC transporter, permease protein	zinc ABC transporter, permease protein	ABC Mn2+/Zn2+ transporter,inner membrane subunit	ABC-type transport system, permease component	manganese/zinc/iron chelate ABC transporter (MZT) family, permease protein identified by similarity to SP:P39832; match to protein family HMM PF00950	ABC-3	ABC-3	ABC transporter, permease protein identified by match to protein family HMM PF00950; match to protein family HMM PF01032	ABC transporter protein	ABC-3	ABC 3 transport family protein	
CHLTR00428	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50s ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	conserved gene 50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	identified by match to protein family HMM PF01016; match to protein family HMM TIGR00062 ribosomal protein L27	50S ribosomal protein L27	LSU ribosomal protein L27P	50S ribosomal protein L27	identified by similarity to SP:P02427; match to protein family HMM PF01016; match to protein family HMM TIGR00062 ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	identified by match to protein family HMM PF01016; match to protein family HMM TIGR00062 ribosomal protein L27	50S ribosomal protein L27	Ribosomal protein L27	50S ribosomal protein L27	Mb2468c, rpmA, len: 86 aa. Equivalent to Rv2441c, len: 86 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 86 aa overlap). Probable rpmA, 50S RIBOSOMAL PROTEINS L27, equivalent to Q9CBZ3|RL27_MYCLE from Mycobacterium leprae (88 aa), FASTA scores: opt: 504, E(): 7.6e-28, (93.2% identity in 81 aa overlap). Also highly similar to others e.g. P95757|RL27_STRGR from Streptomyces griseus (85 aa), FASTA scores: opt: 442, E(): 1.2e-23, (81.5% identity in 81 aa overlap); etc. Contains PS00831 Ribosomal protein L27 signature. BELONGS TO THE L27P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 50S RIBOSOMAL PROTEIN L27 RPMA	InterProMatches:IPR001684; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein L27 (BL24)	
CHLTR00429	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50s ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	conserved gene 50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 ribosomal protein L21	50S ribosomal protein L21	LSU ribosomal protein L21P	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	identified by similarity to SP:P02422; similarity to EGAD:23167; match to protein family HMM PF00829; match to protein family HMM TIGR00061 ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	Mb2469c, rplU, len: 104 aa. Equivalent to Rv2442c, len: 104 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 104 aa overlap). Probable rplU, 50S RIBOSOMAL PROTEIN L21, equivalent to Q9CBZ2|RL21_MYCLE from Mycobacterium leprae (103 aa), FASTA scores: opt: 579, E(): 4.8e-31, (91.1% identity in 102 aa overlap).  Also highly similar to others e.g. P95756|RL21_STRGR from Streptomyces griseus (106 aa), FASTA scores: opt: 362, E(): 5.4e-17, (56.0% identity in 100 aa overlap); etc. PROBABLE 50S RIBOSOMAL PROTEIN L21 RPLU	InterProMatches:IPR001787; Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006 ribosomal protein L21 (BL20)	50S ribosomal protein L21	50S ribosomal protein L21	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 50S ribosomal protein L21	
CHLTR00430	Putative uncharacterized protein	Similar to conserved hypothetical protein hypothetical protein	conserved gene transmembrane protein	Similar to conserved hypothetical protein hypothetical protein	hypothetical protein	identified by similarity to GB:AAQ61403.1; match to protein family HMM PF04367 conserved hypothetical protein	Putative uncharacterized protein	Uncharacterized conserved membrane protein	Putative uncharacterized protein	Putative uncharacterized protein TTHA1360	Similar to many including: Chlamydia muridarum hypothetical protein Tc0702 SWALL:Q9PJX4 (EMBL:AE002339) (215 aa) fasta scores: E(): 3.2e-62, 83.33% id in 210 aa, Fusobacterium nucleatum transporter fn1485 SWALL:Q8RDM7 (EMBL:AE010654) (223 aa) fasta scores: E(): 1.9e-15, 32.21% id in 208 aa and to Ralstonia solanacearum probable transmembrane protein rsc0465 or rs04432 SWALL:Q8Y271 (EMBL:AL646059) (243 aa) fasta scores: E(): 9.5e-15, 31.37% id in 204 aa putative exported protein	Putative integral membrane protein	conserved hypothetical protein	Putative uncharacterized protein	conserved hypothetical protein,putatives membrane protein	Protein of unknown function (DUF502)	identified by similarity to OMNI:NMB0465; match to protein family HMM PF04367 conserved hypothetical protein	Protein of unknown function DUF502	Protein of unknown function DUF502	Best Blastp Hit: pir||G81831 probable integral membrane protein NMA2020 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380649|emb|CAB85239.1| (AL162757) putative integral membrane protein [Neisseria meningitidis] conserved hypothetical protein	Protein of unknown function DUF502	Uncharacterized conserved membrane protein	conserved hypothetical protein	identified by similarity to GB:CAE30615.1; match to protein family HMM PF04367 conserved hypothetical protein	conserved hypothetical protein	conserved hypothetical protein identified by similarity to PIR:AC2026; match to protein family HMM PF04367	protein of unknown function DUF502	protein of unknown function DUF502	Protein of unknown function DUF502	
CHLTR00431	Putative uncharacterized protein	hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00432	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00433	Putative metalloprotease CT_422	Protein of unknown function UPF0054	conserved hypothetical protein	predicted metal-dependent hydrolase	hypothetical metal-binding protein	Putative metal-dependent hydrolase	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative metal-dependent hydrolase	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00434	CBS Domain protein	Similar to several proteins of undefined function including: Chlamydia pneumoniae CBS domain protein tlyc_2 or cpn0510 or cp0244 SWALL:Q9Z842 (EMBL:AE001636) (387 aa) fasta scores: E(): 4.2e-81, 61.24% id in 387 aa and to Chlamydia muridarum hemolysin, putative tc0706 SWALL:Q9PJX0 (EMBL:AE002339) (374 aa) fasta scores: E(): 6.5e-68, 53.74% id in 374 aa putative exported protein	Hemolysin	Similar to Q83E77 Hypothetical protein from Coxiella burnetii (417 aa). FASTA: opt: 1049 Z-score: 1211.5 E(): 1.4e-59 Smith-Waterman score: 1049; 40.049 identity in 407 aa overlap. ORF ftt0676 conserved hypothetical membrane protein	Magnesium and cobalt efflux protein	Hemolysin or related protein containing CBS domains	ortholog to Escherichia coli bnum: b1816; MultiFun: Cell structure 6.1 putative transmembrane protein	Evidence 2b : Function of strongly homologous gene; Product type t : transporter magnesium and cobalt efflux protein corC	CBS:Transporter-associated region	CBS domain protein identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471	CBS domain containing protein precursor	Magnesium and cobalt efflux protein corC	Hemolysin	CBS/transporter domain protein	conserved hypothetical membrane protein Similar to Q83E77 Hypothetical protein from Coxiella burnetii (417 aa). FASTA: opt: 1049 Z-score: 1211.5 E(): 1.4e-59 Smith-Waterman score: 1049; 40.049 identity in 407 aa overlap. ORF ftt0676	Hemolysins and related protein containing CBS domains	CBS domain containing protein PFAM: CBS domain containing protein; transporter-associated region KEGG: rsp:RSP_3597 CorC/HlyC family protein with CBS domains	CBS domain containing protein	CBS domain containing protein PFAM: CBS domain containing protein; transporter-associated region KEGG: gme:Gmet_2368 CBS:transporter-associated region	CorC magnesium and cobalt efflux protein	Possible HCC family HlyC/CorC transporter	conserved hypothetical membrane protein	putative transport protein	transporter-associated protein, HlyC/CorC family	CBS domain pair protein	transporter-associated region PFAM: CBS domain containing protein transporter-associated region KEGG: mlo:mlr5537 hemolysin	CBS domain containing protein PFAM: CBS domain containing protein; transporter-associated region KEGG: rfr:Rfer_3698 CBS	HlyC/CorC family transporter	CBS domain pair and transporter associated domain protein	
CHLTR00435	Anti-sigma factor antagonist	stage II sporulation protein AA, anti-sigma F factor antagonist	Weakly similar to Streptomyces coelicolor anti-sigma B factor antagonist RsbV or BldG or sco3549 or sch5.12C SWALL:RSBV_STRCO (SWALL:Q9WVX8) (113 aa) fasta scores: E(): 2.5e-05, 26.73% id in 101 aa and to Chlamydia pneumoniae sigma regulatory factor RsbV_1 or cpn0511 or cp0243 SWALL:Q9Z841 (EMBL:AE001636) (116 aa) fasta scores: E(): 1.2e-34, 81.03% id in 116 aa putative regulatory protein	anti-sigma B factor antagonist, putative identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377	anti-sigma F factor antagonist	anti-sigma-factor antagonist	anti-sigma F factor antagonist identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; match to protein family HMM TIGR02886	anti-sigma F factor antagonist identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; match to protein family HMM TIGR02886	anti-sigma F factor antagonist	Anti-sigma factor antagonist	anti-anti-sigma factor identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377	anti-anti-sigma regulatory factor, SpoIIAA	anti-sigma-factor antagonist TIGRFAM: anti-anti-sigma factor PFAM: Sulfate transporter/antisigma-factor antagonist STAS KEGG: plt:Plut_1039 anti-anti-sigma regulatory factor, SpoIIAA	anti-sigma-factor antagonist TIGRFAM: anti-anti-sigma factor PFAM: Sulfate transporter/antisigma-factor antagonist STAS KEGG: sat:SYN_02356 anti-sigma F factor antagonist	anti-sigma F factor antagonist	Anti-sigma-factor antagonist	anti-sigma-factor antagonist TIGRFAM: anti-anti-sigma factor PFAM: Sulfate transporter/antisigma-factor antagonist STAS KEGG: bpe:BP2226 putative anti-sigma factor antagonist	Anti-sigma F factor antagonist	Anti-sigma-factor antagonist	Putative anti-anti-sigma factor	Anti-sigma factor antagonist	Anti-sigma F factor antagonist	Anti-anti-sigma factor	Anti-sigma-factor antagonist	SpoIIAA	Anti-sigma F factor antagonist	Anti-sigma factor antagonist	Anti-sigma F factor antagonist	Anti-sigma-factor antagonist	
CHLTR00436	Uncharacterized protein CT_425	hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00437	Fe-S oxidoreductase	conserved hypothetical protein	Radical SAM domain protein	Similar to many proteins of undefined function including: Chlamydia muridarum hypothetical protein Tc0710 SWALL:Q9PJW6 (EMBL:AE002339) (369 aa) fasta scores: E(): 1.1e-107, 71.11% id in 367 aa, Aquifex aeolicus hypothetical protein Aq_648 SWALL:O66888 (EMBL:AE000700) (371 aa) fasta scores: E(): 8.1e-40, 37.17% id in 347 aa and to Bacillus halodurans hypothetical protein Bh3411 SWALL:Q9K7F1 (EMBL:AP001518) (364 aa) fasta scores: E(): 2.5e-35, 33.42% id in 356 aa conserved hypothetical protein	Putative uncharacterized protein	Putative	Thiamine biosynthesis enzyme ThiH or related uncharacterized enzyme	Putative uncharacterized protein	conserved hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	conserved hypothetical protein KEGG: dra:DR0366 hypothetical protein, ev=0.0, 88% identity TIGRFAM: conserved hypothetical protein: (5.5e-128) PFAM: Radical SAM: (4.2e-17) SMART: Elongator protein 3/MiaB/NifB: (5.1e-07)	conserved hypothetical protein	hypothetical protein	Radical SAM domain protein	Radical SAM domain protein PFAM: Radical SAM domain protein SMART: Elongator protein 3/MiaB/NifB KEGG: chy:CHY_1806 radical SAM domain protein	Hypothetical protein	conserved hypothetical protein identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423	Radical SAM domain protein PFAM: Radical SAM domain protein SMART: Elongator protein 3/MiaB/NifB KEGG: cps:CPS_4048 conserved hypothetical protein TIGR00423	conserved hypothetical protein	conserved hypothetical protein Specificity unclear	conserved hypothetical protein TIGRFAM: conserved hypothetical protein PFAM: Radical SAM domain protein KEGG: fra:Francci3_0519 conserved hypothetical protein	Radical SAM domain protein PFAM: Radical SAM domain protein SMART: Elongator protein 3/MiaB/NifB KEGG: gme:Gmet_3391 hypothetical protein	biotin synthase thiamine biosynthesis enzyme	conserved hypothetical protein	Radical SAM domain protein	radical SAM domain protein identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423	conserved hypothetical protein	Radical SAM domain protein	
CHLTR00437	Fe-S oxidoreductase	conserved hypothetical protein	Radical SAM domain protein	Similar to many proteins of undefined function including: Chlamydia muridarum hypothetical protein Tc0710 SWALL:Q9PJW6 (EMBL:AE002339) (369 aa) fasta scores: E(): 1.1e-107, 71.11% id in 367 aa, Aquifex aeolicus hypothetical protein Aq_648 SWALL:O66888 (EMBL:AE000700) (371 aa) fasta scores: E(): 8.1e-40, 37.17% id in 347 aa and to Bacillus halodurans hypothetical protein Bh3411 SWALL:Q9K7F1 (EMBL:AP001518) (364 aa) fasta scores: E(): 2.5e-35, 33.42% id in 356 aa conserved hypothetical protein	Putative uncharacterized protein	Putative	Thiamine biosynthesis enzyme ThiH or related uncharacterized enzyme	Putative uncharacterized protein	conserved hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	conserved hypothetical protein KEGG: dra:DR0366 hypothetical protein, ev=0.0, 88% identity TIGRFAM: conserved hypothetical protein: (5.5e-128) PFAM: Radical SAM: (4.2e-17) SMART: Elongator protein 3/MiaB/NifB: (5.1e-07)	conserved hypothetical protein	hypothetical protein	Radical SAM domain protein	Radical SAM domain protein PFAM: Radical SAM domain protein SMART: Elongator protein 3/MiaB/NifB KEGG: chy:CHY_1806 radical SAM domain protein	Hypothetical protein	conserved hypothetical protein identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423	Radical SAM domain protein PFAM: Radical SAM domain protein SMART: Elongator protein 3/MiaB/NifB KEGG: cps:CPS_4048 conserved hypothetical protein TIGR00423	conserved hypothetical protein	conserved hypothetical protein Specificity unclear	conserved hypothetical protein TIGRFAM: conserved hypothetical protein PFAM: Radical SAM domain protein KEGG: fra:Francci3_0519 conserved hypothetical protein	Radical SAM domain protein PFAM: Radical SAM domain protein SMART: Elongator protein 3/MiaB/NifB KEGG: gme:Gmet_3391 hypothetical protein	biotin synthase thiamine biosynthesis enzyme	conserved hypothetical protein	Radical SAM domain protein	radical SAM domain protein identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423	conserved hypothetical protein	Radical SAM domain protein	
CHLTR00438	Putative uncharacterized protein	identified by similarity to GP:1813469; match to protein family HMM PF02621 conserved hypothetical protein	protein of unknown function DUF178	protein of unknown function DUF178 PFAM: protein of unknown function DUF178: (1.1e-18) KEGG: dra:DR0370 hypothetical protein, ev=1e-130, 83% identity	conserved hypothetical protein	protein of unknown function DUF178 PFAM: protein of unknown function DUF178 KEGG: aba:Acid345_3342 protein of unknown function DUF178	protein of unknown function DUF178 PFAM: protein of unknown function DUF178 KEGG: gsu:GSU2017 hypothetical protein	hypothetical cytosolic protein	protein of unknown function DUF178 PFAM: protein of unknown function DUF178 KEGG: dvu:DVU2758 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative periplasmic solute-binding protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00439	Menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	Menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase	conserved gene ubiquinone/menaquinone biosynthesis methyltransferase UbiE	Ubiquinone/menaquinone biosynthesis methyltransferase	Menaquinone biosynthesis methyltransferase ubiE	identified by match to protein family HMM PF01209; match to protein family HMM TIGR01934 methlytransferase, UbiE/COQ5 family	ubiquinone/menaquinone biosynthesis methyltransferase	identified by similarity to SP:P27851; match to protein family HMM PF01209; match to protein family HMM TIGR01934 ubiquinone/menaquinone biosynthesis methyltransferase UbiE	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	Menaquinone biosynthesis methyltransferase ubiE	Methylase	identified by similarity to SP:O86169; match to protein family HMM PF01209; match to protein family HMM TIGR01934 ubiquinone/menaquinone biosynthesis methyltransferase	Menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase protein	Menaquinone biosynthesis methyltransferase ubiE	Mb0573, menH, len: 234 aa. Equivalent to Rv0558, len: 234 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 234 aa overlap). Probable menH (alternate gene name: menG), ubiquinone/menaquinone biosynthesis methlytransferase (2-heptaprenyl-1,4-naphthoquinone methyltransferase) (EC 2.1.1.-), equivalent to NP_302480.1|NC_002677 putative ubiquinone/menaquinone biosynthesis methyltransferase from Mycobacterium leprae (238 aa). Also highly similar to others e.g. CAB44537.1|AL078618|T34630 from Streptomyces coelicolor (231 aa); UBIE_ECOLI|P27851 from Escherichia coli strain K12 (251 aa), FASTA scores: opt: 421, E(): 1.2e-21, (43.2% identity in 227 aa overlap); GRC2_BACSU|P31113 from Bacillus subtilis (233 aa), FASTA scores: opt: 345, E(): 1.4e-16, (34.6% identity in 231 aa overlap); etc. BELONGS TO THE UBIE FAMILY. Note that previously known as ubiE. PROBABLE UBIQUINONE/MENAQUINONE BIOSYNTHESIS METHYLTRANSFERASE MENH (2-heptaprenyl-1,4-naphthoquinone methyltransferase)	InterProMatches:IPR004034; menaquinone biosynthesis,Molecular Function: methyltransferase activity (GO:0008168), Biological Process: coenzyme biosynthesis (GO:0009108) methyltransferase	menaquinone biosynthesis methyltransferase	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ubiquinone/menaquinone transferase	Ubiquinone/menaquinone biosynthesis methyltransferase	IPR000051: SAM (and some other nucleotide) binding motif; IPR001601: Generic methyltransferase; IPR004034: Ubiquinone/menaquinone biosynthesis methyltransferase S-adenosylmethionine : 2-DMK methyltransferase and 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase	Methylase involved in ubiquinone/menaquinone biosynthesis	
CHLTR00440	UPF0158 protein CT_429	hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00441	Diaminopimelate epimerase	Diaminopimelate epimerase	conserved gene diaminopimelate epimerase	Diaminopimelate epimerase	diaminopimelate epimerase	identified by similarity to SP:P08885; match to protein family HMM PF01678; match to protein family HMM TIGR00652 diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	InterProMatches:IPR001653; Molecular Function: diaminopimelate epimerase activity (GO:0008837), Biological Process: lysine biosynthesis via diaminopimelate (GO:0009089) diaminopimelate epimerase	diaminopimelate epimerase	Diaminopimelate epimerase	Similar to Chlamydia pneumoniae diaminopimelate epimerase DapF or cpn0519 or cp0234 SWALL:DAPF_CHLPN (SWALL:Q9Z833) (257 aa) fasta scores: E(): 9.5e-53, 54.82% id in 259 aa putative diaminopimelate epimerase	Diaminopimelate epimerase	Putative diaminopimelate epimerase	putative assignment Diaminopimelate epimerase	Similar to sp|Q8YJF0|DAPF_BRUME sp|Q8UC03|DAPF_AGRT5 sp|Q9A280|DAPF_CAUCR sp|Q8YVD0|DAP2_ANASP; Ortholog to ERGA_CDS_00210 Diaminopimelate epimerase	Diaminopimelate epimerase	diaminopimelate epimerase	Similar to Escherichia coli, and Escherichia coli O157:H7 diaminopimelate epimerase DapF or B3809 or Z5326 or ECS4739 SWALL:DAPF_ECOLI (SWALL:P08885) (274 aa) fasta scores: E(): 3.6e-17, 38.71% id in 279 aa, and to Aquifex aeolicus diaminopimelate epimerase DapF or AQ_1838 SWALL:DAPF_AQUAE (SWALL:O67693) (279 aa) fasta scores: E(): 3.6e-25, 36.36% id in 275 aa diaminopimelate epimerase	Diaminopimelate epimerase	diaminopimelate epimerase	diaminopimelate epimerase	Diaminopimelate epimerase (DAP epimerase)	Diaminopimelate epimerase	diaminopimelate epimerase	Similar to sp|Q8YJF0|DAPF_BRUME sp|Q8UC03|DAPF_AGRT5 sp|Q9A280|DAPF_CAUCR sp|Q8YVD0|DAP2_ANASP; Ortholog to ERWE_CDS_00210 Diaminopimelate epimerase	identified by similarity to SP:P08885; match to protein family HMM TIGR00652 diaminopimelate epimerase	identified by similarity to SP:Q51564; match to protein family HMM PF01678; match to protein family HMM TIGR00652 diaminopimelate epimerase	
CHLTR00442	ATP-dependent Clp protease proteolytic subunit 1	ATP-dependent Clp endopeptidase ATP-binding proteolytic subunit 1 EC 3.4.21.92	endopeptidase Clp, subunit 1 protein similar to clpP (Atu1627) [Agrobacterium tumefaciens str. C58] and clpP3 (SMc03841) [Sinorhizobiummeliloti] Similar to entrez-protein:Q8UEX6 Putative location:bacterial cytoplasm Psort-Score: 0.1040; go_function: hydrolase activity [goid 0016787]; go_function: serine-type endopeptidase activity [goid 0004252]; go_function: endopeptidase Clp activity [goid 0008462]; go_process: proteolysis and peptidolysis [goid 0006508]	ATP-dependent Clp protease proteolytic subunit	Protease subunit of an ATP-dependent Clp protease cytoplasmic protein	Protease subunit of ATP-dependent Clp protease	Protease subunit of an ATP-dependent Clp protease cytoplasmic protein	ATP-dependent Clp protease proteolytic subunit	transcript_id=ENSSART00000011271	Magnaporthe grisea hypothetical protein	ATP-dependent Clp protease proteolytic subunit	Endopeptidase Clp	Putative ATP-dependent Clp protease	ATP-dependent Clp protease proteolytic subunit 1	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	Endopeptidase Clp protein, subunit 1	ATP-dependent Clp protease proteolytic subunit	Endopeptidase Clp	ATP-dependent Clp protease proteolytic subunit	
CHLTR00443	Serine hydroxymethyltransferase	Serine hydroxymethyltransferase	Serine hydroxymethyltransferase 2	Serine hydroxymethyltransferase	identified by match to protein family HMM PF00464 serine hydroxymethyltransferase	Serine hydroxymethyltransferase	Serine hydroxymethyltransferase 1	Mb1123, glyA1, len: 426 aa. Equivalent to Rv1093, len: 426 aa, from Mycobacterium tuberculosis strain H37Rv, (99.8% identity in 426 aa overlap). Probable glyA1, serine hydroxymethyltransferase 1 (EC 2.1.2.1), equivalent to AL049491|MLCB1222_16 from Mycobacterium leprae (426 aa), FASTA score: (89.9 % identity in 426 aa overlap). Also similar to many e.g. P34895|GLYA_HYPME HYPHOMICROBIUM METHYLOVORUM (434 aa), FASTA scores: opt: 1492, E(): 0, (56.8% identity in 419 aa overlap); etc. BELONGS TO THE SHMT FAMILY. Note that previously known as glyA. Probable Serine hydroxymethyltransferase 1 glyA1	Serine hydroxymethyltransferase	Similar to Chlamydia pneumoniae serine hydroxymethyltransferase GlyA or cpn0521 or cp0232 SWALL:GLYA_CHLPN (SWALL:Q9Z831) (497 aa) fasta scores: E(): 5.9e-168, 82.29% id in 497 aa, and to Bradyrhizobium japonicum serine hydroxymethyltransferase GlyA SWALL:GLYA_BRAJA (SWALL:P24060) (432 aa) fasta scores: E(): 6.5e-45, 40.89% id in 467 aa putative serine hydroxymethyltransferase	COG0112 glycine/serine hydroxymethyltransferase	Serine hydroxymethyltransferase	Glycine/serine hydroxymethyltransferase	glycine hydroxymethyltransferase (EC 2.1.2.1)	identified by similarity to SP:P39148; match to protein family HMM PF00155; match to protein family HMM PF00202; match to protein family HMM PF00464; match to protein family HMM PF01212; match to protein family HMM PF01276 serine hydroxymethyltransferase	serine hydroxymethyltransferase	serine hydroxymethyltransferase 2 (mitochondrial) [Source:HGNC Symbol;Acc:10852]	serine hydroxymethyltransferase identified by match to protein family HMM PF00464; match to protein family HMM PF01212	Glycine hydroxymethyltransferase	GlyA serine:H4MPT hydroxymethyltransferase; COG0112, pfam00464	serine hydroxymethyltransferase	Glycine hydroxymethyltransferase	Glycine hydroxymethyltransferase	serine/glycine hydroxymethyltransferase EC 2.1.2.-	transcript_id=ENSGACT00000010345	Glycine hydroxymethyltransferase	hypothetical protein similarity to COG0112 Glycine hydroxymethyltransferase(Evalue: 1E-173)	Glycine hydroxymethyltransferase precursor	
CHLTR00444	Putative uncharacterized protein	conserved hypothetical protein	uroporphyrin-III C-methyltransferase uroporphyrinogen-III synthase	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00446	Sulfite Reductase	Sulfite reductase, alpha subunit	sulfite reductase flavoprotein subunit	NADPH-cytochrome P450 reductase	predicted protein go_function: oxidoreductase activity; go_process: electron transport	Oxidoreductase	Putative sulphite reductase flavodoxin containing alpha subunit	FAD-binding domain protein	Putative oxidoreductase	Putative oxidoreductase	FAD-binding domain protein	Putative sulphite reductase alpha subunit	Flavodoxin/nitric oxide synthase	Putative oxidoreductase	
CHLTR00445	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	2-C-methyl-D-erythritol 24-cyclodiphosphate synthase	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	Mb3612c, ispF, len: 159 aa. Equivalent to Rv3581c, len: 159 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 159 aa overlap). Probable ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC not defined), equivalent to Q9CCW5|ML0322 PUTATIVE 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE from Mycobacterium leprae (158 aa), FASTA scores: opt: 830, E(): 2.9e-47, (79.1% identity in 158 aa overlap). Also highly similar to others e.g. Q9L0Q7|ISPF_STRCO|SCD8A.07 from Streptomyces coelicolor (170 aa), FASTA scores: opt: 585, E(): 2.9e-31, (56.5% identity in 154 aa overlap); Q9PDT5|ISPF_XYLFA|XF1294 from Xylella fastidiosa (176 aa), FASTA scores: opt: 398, E(): 4.6e-19, (44.9% identity in 156 aa overlap); Q08113|ISDF_RHOCA|ISPDF from Rhodobacter capsulatus (Rhodopseudomonas capsulata) (379 aa), FASTA scores: opt: 387, E(): 4.5e-18, (42.85% identity in 154 aa overlap) (only similar with C-terminal end of this bifunctional protein ISPD and ISPF); Q06756|ISPF_BACSU from Bacillus subtilis (158 aa), FASTA scores: opt: 367, E(): 4.5e-17, (41.2% identity in 153 aa overlap); etc.  BELONGS TO THE ISPF FAMILY. PROBABLE 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE ISPF (MECPS)	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Molecular Function: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity (GO:0008685), Biological Process: terpenoid biosynthesis (GO:0016114) MECDP-synthase	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	IPR003526: YgbB 2C-methyl-d-erythritol-2,4-cyclodiphosphate synthase	similar to Salmonella typhi Ty2 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	Similar to Chlamydia pneumoniae 2-c-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF or cpn0547 or cp0205 SWALL:ISPF_CHLPN (SWALL:Q9Z805) (176 aa) fasta scores: E(): 3.4e-53, 76.57% id in 175 aa, and to Escherichia coli, and Escherichia coli O157:H7 2-c-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF SWALL:ISPF_ECOLI (SWALL:P36663) (159 aa) fasta scores: E(): 1.2e-07, 29.11% id in 158 aa conserved hypothetical protein	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	Hypothetical protein	identified by match to protein family HMM PF02542; match to protein family HMM TIGR00151 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	COG0245 IspF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase similar to NP_755192.1 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthetase	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	MECPS; MECDP-synthase; Similar to: HI0671, ISPF_HAEIN 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF or MecS or B2746 or Z4054 or ECS3600 or SF2769 or S2962 SWALL:ISPF_ECOLI (SWALL:P36663) (159 aa) fasta scores: E(): 1.2e-25, 50% id in 154 aa, and to Bacillus subtilis 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF or BSU00910 SWALL:ISPF_BACSU (SWALL:Q06756) (158 aa) fasta scores: E(): 1.3e-29, 56.12% id in 155 aa putative 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	2C-methyl-D-erythritol 2, 4-cyclodiphosphate synthase IspF protein	
CHLTR00447	30S ribosomal protein S10	SSU ribosomal protein S10P	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal subunit protein S10	conserved gene 30S ribosomal protein S10	30S ribosomal subunit protein S10	30S ribosomal protein S10	identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049 ribosomal protein S10	30S ribosomal protein S10	SSU ribosomal protein S10P	30S ribosomal protein S10	identified by similarity to SP:P02364; match to protein family HMM PF00338; match to protein family HMM TIGR01049 ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	identified by similarity to SP:P02364; match to protein family HMM PF00338; match to protein family HMM TIGR01049 ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	Mb0720, rpsJ, len: 101 aa. Equivalent to Rv0700, len: 101 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 101 aa overlap). rpsJ (alternate gene name: nusE), 30S ribosomal protein S10 (see first citation below), equivalent to RS10_MYCLE P307653 30S ribosomal protein S10 from Mycobacterium leprae (101 aa), FASTA scores: opt: 645, E(): 0, (97.0% identity in 101 aa overlap). Also highly similar to others e.g.  CAB82069.1|AL161803 30S ribosomal protein S10 from Streptomyces coelicolor (102 aa); etc. Contains PS00361 Ribosomal protein S10 signature. BELONGS TO THE S10P FAMILY OF RIBOSOMAL PROTEINS. 30S RIBOSOMAL PROTEIN S10 RPSJ (TRANSCRIPTION ANTITERMINATION FACTOR NUSE)	InterProMatches:IPR005731; Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: protein biosynthesis (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935) ribosomal protein S10 (BS13)	30S ribosomal protein S10	
CHLTR00448	Elongation factor G	Elongation factor G	Elongation factor G	Elongation factor G	Elongation factor G	GTP-binding protein chain elongation factor ef-g	Elongation factor G	translation elongation factor G	conserved gene translation elongation factor G (EF-G)	translation elongation factor G	Elongation factor G	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; match to protein family HMM TIGR00484 translation elongation factor G	Elongation factor G	EF-G Translation Elongation Factor G	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; match to protein family HMM TIGR00484 translation elongation factor G	Elongation factor G	translation elongation factor G, EF-G	Elongation factor G	Elongation factor G	Elongation factor G	Elongation factor G	identified by similarity to SP:P80868; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; match to protein family HMM TIGR00484 translation elongation factor G	Elongation factor G	Translation elongation factor G	Elongation factor G	Mb0703, fusA1, len: 701 aa. Equivalent to Rv0684, len: 701 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 701 aa overlap). Probable fusA1, elongation factor G, equivalent to P30767|EFG_MYCLE|S31150 translation elongation factor EF-G from Mycobacterium leprae (701 aa), FASTA scores: opt: 2521, E(): 0, (88.2% identity in 432 aa overlap). Also highly similar to others e.g. CAB81852.1|AL161691 elongation factor G from Streptomyces coelicolor (708 aa); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop) and PS00301 GTP-binding elongation factors signature. BELONGS TO THE GTP-BINDING ELONGATION FACTOR FAMILY, EF-G/EF-2 SUBFAMILY.  Note that previously known as fusA. PROBABLE ELONGATION FACTOR G FUSA1 (EF-G)	InterProMatches:IPR004540, IPR005225; Molecular Function: translation elongation factor activity (GO:0003746), Molecular Function: GTP binding (GO:0005525), Biological Process: translational elongation (GO:0006414), Molecular Function: GTP binding (GO:0005525) elongation factor G	translation elongation factor G	Elongation factor G	
CHLTR00449	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30s ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	conserved gene 30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	identified by match to protein family HMM PF00177; match to protein family HMM TIGR01029 ribosomal protein S7	30S ribosomal protein S7	SSU ribosomal protein S7P	30S ribosomal protein S7	identified by match to protein family HMM PF00177; match to protein family HMM TIGR01029 ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	identified by similarity to SP:P02359; match to protein family HMM PF00177; match to protein family HMM TIGR01029 ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	Mb0702, rpsG, len: 156 aa. Equivalent to Rv0683, len: 156 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 156 aa overlap). Probable rpsG, 30S ribosomal protein S7 (see citation below), equivalent to others from Mycobacteria e.g. P41193|RS7_MYCSM 30S RIBOSOMAL PROTEIN S7 from Mycobacterium smegmatis (156 aa), FASTA scores: opt: 986, E(): 0, (96.2% identity in 156 aa overlap); Q53539|RS7_MYCBO 30S RIBOSOMAL PROTEIN S7 from Mycobacterium bovis (156 aa); etc. Also highly similar to others e.g. Q9L0K4|RS7_STRCO 30S RIBOSOMAL PROTEIN S7 from Streptomyces coelicolor (156 aa); etc.  Contains PS00052 Ribosomal protein S7 signature. BELONGS TO THE S7P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 30S RIBOSOMAL PROTEIN S7 RPSG	InterProMatches:IPR005717; Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: protein biosynthesis (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935) ribosomal protein S7 (BS7)	
CHLTR00450	30S ribosomal protein S12	30S ribosomal protein S12	SSU ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30s ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	conserved gene 30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	identified by match to protein family HMM PF00164; match to protein family HMM TIGR00981 ribosomal protein S12	30S ribosomal protein S12	SSU ribosomal protein S12P	30S ribosomal protein S12	identified by similarity to SP:P02367; match to protein family HMM PF00164; match to protein family HMM TIGR00981 ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	identified by similarity to SP:P18662; match to protein family HMM PF00164; match to protein family HMM TIGR00981 ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	Mb0701, rpsL, len: 124 aa. Equivalent to Rv0682, len: 124 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 124 aa overlap). Probable rpsL, 30S ribosomal protein S12 (see citations below), equivalent to others from Mycobacteria e.g. P41195|RS12_MYCSM 30S RIBOSOMAL PROTEIN S12 from Mycobacterium smegmatis (124 aa); P51999|RS12_MYCAV 30S RIBOSOMAL PROTEIN S12 from Mycobacterium avium (124 aa); etc. Also highly similar to others from other organisms e.g. P97222|RS12_STRCO 30S RIBOSOMAL PROTEIN S12 from Streptomyces roseosporus, lividans and coelicolor (123 aa); etc. Contains PS00055 Ribosomal protein S12 signature. BELONGS TO THE S12P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 30S RIBOSOMAL PROTEIN S12 RPSL	
CHLTR00451	Putative uncharacterized protein	Putative membrane protein	Putative membrane protein	
CHLTR00452	Tail-Specific Protease	Peptidase S41A, C-terminal protease	carboxyl-terminal protease	cell division related penicillin-binding proteinase	tail-specific protease	carboxy-terminal processing protease precursor	Carboxyl-terminal protease	Carboxyl-terminal protease precursor	Carboxyl-terminal protease precursor	Carboxy-terminal processing protease precursor	Carboxy-terminal processing protease precursor	Tail-specific protease	Tail-specific protease, periplasmic	Carboxyl-terminal protease	Carboxy-terminal processing protease	Putative tail-specific protease	
CHLTR00453	Sulfur-rich protein, serovar D	Cysteine-rich membrane protein	Cysteine-rich membrane protein	
CHLTR00454	Large cysteine-rich periplasmic protein omcB	outer membrane protein	60kD cysteine-rich outer membrane protein	60kD cysteine-rich outer membrane protein precursor	60kD cysteine-rich outer membrane protein precursor	Large cysteine-rich periplasmic protein omcB	Large cysteine-rich periplasmic protein omcB	
CHLTR00455	Small cysteine-rich outer membrane protein omcA	outer membrane protein	cysteine-rich outer membrane protein 3 precursor	Cysteine-rich outer membrane protein precursor	Cysteine-rich outer membrane protein precursor	
CHLTR00457	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	glutamyl tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase, catalytic subunit	conserved gene glutamate tRNA synthetase catalytic subunit	Glutamyl-tRNA synthetase, catalytic subunit	Glutamyl-tRNA synthetase	identified by match to protein family HMM PF00749; match to protein family HMM TIGR00464 glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	glutamyl-tRNA synthetase	identified by match to protein family HMM PF00749; match to protein family HMM TIGR00464 glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	identified by similarity to SP:P04805; match to protein family HMM PF00749; match to protein family HMM TIGR00464 glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase protein	Glutamyl-tRNA synthetase	Mb3016c, gltS, len: 490 aa. Equivalent to Rv2992c, len: 490 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 490 aa overlap). Probable gltS (alternate gene name: gltX), glutamyl-tRNA synthase (EC 6.1.1.17), equivalent to O33120|SYE_MYCLE GLUTAMYL-TRNA SYNTHETASE from Mycobacterium leprae (502 aa), FASTA scores: opt: 2660, E(): 2.3e-163, (81.35% identity in 488 aa overlap). Also highly similar to others e.g.  O86528|SYE_STRCO from Streptomyces coelicolor (494 aa), FASTA scores: opt: 1777, E(): 1.4e-106, (57.45% identity in 484 aa overlap); P22250|SYE_BACSU from Bacillus subtilis (483 aa), FASTA scores: opt: 1099, E(): 5.4e-63, (38.45% identity in 489 aa overlap); O51345|SYE_BORBU|GLTX|BB0372 from Borrelia burgdorferi (Lyme disease spirochete) (490 aa), FASTA scores: opt: 1009, E(): 3.3e-57, (34.85% identity in 491 aa overlap); etc. BELONGS TO CLASS-I AMINOACYL-TRNA SYNTHETASE FAMILY.  TBparse score is 0.891. PROBABLE GLUTAMYL-TRNA SYNTHETASE GLTS (GLUTAMATE--TRNA LIGASE) (GLUTAMYL-TRNA SYNTHASE) (GLURS)	glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark glutamyl-tRNA synthetase	
CHLTR00456	Putative uncharacterized protein	hypothetical membrane associated protein	Putative lipoprotein precursor	Putative lipoprotein precursor	
CHLTR00458	Uncharacterized protein CT_446	Hc protease EUO	Euo protein	Putative uncharacterized protein euo	Putative uncharacterized protein euo	Putative uncharacterized protein euo	
CHLTR00459	SsDNA Exonuclease	RecJ: single-stranded-DNA-specific exonuclease	Similar to single-strand DNA-specific exonuclease	RecJ protein	Probable single-stranded-dna-specific exonuclease protein	Single-stranded-DNA-specific exonuclease RecJ	Single-stranded-DNA-specific exonuclease RecJ	conserved gene single stranded DNA specific exonuclease RecJ	Single-stranded-DNA-specific exonuclease RecJ	Single-strand DNA-specific exonuclease RecJ	identified by similarity to EGAD:24228; match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 single-stranded-DNA-specific exonuclease RecJ	Single-stranded-DNA-specific exonuclease RecJ	single-stranded DNA-specific exonuclease	identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 single-stranded-DNA-specific exonuclease RecJ	Exodeoxyribonuclease VII	single strand DNA-specific exonuclease	Single-stranded DNA exonuclease	Single-strand DNA-specific exonuclease	Single-stranded DNA-specific exonuclease	identified by similarity to OMNI:HP0348; match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 single-stranded-DNA-specific exonuclease RecJ	Single-stranded-DNA-specific exonuclease protein	Mg2+-dependent ssDNA specific 5'-3' exonuclease; Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Molecular Function: 5'-3' exonuclease activity (GO:0008409) RecJ exonuclease	single-strand DNA-specific exonuclease	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark single-stranded-DNA-specific exonuclease	RecJ COG0608 Single-stranded DNA-specific exonuclease single-stranded-DNA-specific exonuclease	Single-stranded DNA specific exonuclease RecJ	Single-stranded DNA specific exonuclease	IPR001667: Phosphoesterase, RecJ-like; IPR003156: Phosphoesterase, DHHA1; IPR004610: Bacterial RecJ exonuclease ssDNA exonuclease, 5'--> 3' specific, Mg dependent	Single-stranded DNA-specific exonuclease RecJ	
CHLTR00460	SecD/SecF fusion protein	protein export proteins SecD/SecF fusion	Protein translocase (SecFG fusion protein) precursor	Protein translocase (SecFG fusion protein) precursor	Protein translocase	

CHLTR00461	Putative uncharacterized protein	Putative membrane protein	Putative membrane protein	
CHLTR00462	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	undecaprenyl diphosphate synthase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	conserved gene undecaprenyl diphosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	identified by similarity to SP:O82827; match to protein family HMM PF01255; match to protein family HMM TIGR00055 undecaprenyl diphosphate synthase	Undecaprenyl pyrophosphate synthetase	undecaprenyl pyrophosphate synthetase	identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055 undecaprenyl diphosphate synthase	Undecaprenyl pyrophosphate synthetase	undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055 undecaprenyl diphosphate synthase	Putative uncharacterized protein	Undecaprenyl diphosphate synthase	Undecaprenyl pyrophosphate synthetase	Mb2382c, -, len: 296 aa. Equivalent to Rv2361c, len: 296 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 296 aa overlap). Long (C50) chain Z-isoprenyl diphosphate synthase (EC 2.5.1.-) (see citation below), equivalent to UPPS_MYCLE|ML0634|B1937_F2_65|P38119 UNDECAPRENYL PYROPHOSPHATE SYNTHETASE from Mycobacterium leprae (296 aa), FASTA scores: opt: 1789, E(): 1.8e-97, (86.5% identity in 296 aa overlap). Also highly similar to others e.g. UPPS|Q9L2H4 UNDECAPRENYL PYROPHOSPHATE SYNTHETASE from Streptomyces coelicolor (277 aa), FASTA scores: opt: 1098, E(): 8.2e-60, (63.5% identity in 247 aa overlap); Q55482|UPPS_SYNY3|SLL0506 from Synechocystis sp. strain PCC 6803 (249 aa), FASTA scores: opt: 686, E(): 4.2e-33, (46.4% identity in 235 aa overlap); O67291|UPPS_AQUAE|AQ_1248 from Aquifex aeolicus (231 aa), FASTA scores: opt: 684, E(): 5.2e-33, (46.3% identity in 229 aa overlap); etc. Also similar to Rv1086|MTV017.39 from Mycobacterium tuberculosis. Contains PS01066 Hypothetical YBR002c family signature. SEEMS TO BELONG TO THE UPP SYNTHETASE FAMILY. Note that previously known as uppS. LONG (C50) CHAIN Z-ISOPRENYL DIPHOSPHATE SYNTHASE (Z-DECAPRENYL DIPHOSPHATE SYNTHASE)	InterProMatches:IPR001441; Biological Process: metabolism (GO:0008152), Molecular Function: transferase activity (GO:0016740) undecaprenyl pyrophosphate synthetase	undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark undecaprenyl pyrophosphate synthetase	
CHLTR00463	Phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase	CdsA COG0575 CDP-diglyceride synthetase phosphatidate cytidylyltransferase	IPR000374: Phosphatidate cytidylyltransferase CDP-diglyceride synthase	similar to Salmonella typhi CT18 phosphatidate cytidylyltransferase phosphatidate cytidylyltransferase	Similar to Chlamydia pneumoniae phosphatidate cytidylyltransferase CdsA or cpn0567 or cp0182 SWALL:CDSA_CHLPN (SWALL:Q9Z7Y6) (308 aa) fasta scores: E(): 1.6e-86, 72.96% id in 307 aa putative membrane protein	Phosphatidate cytidylyltransferase	CDP-diglyceride synthetase; CDP-diglyceride pyrophosphorylase; CDP-diacylglycerol synthase; CDS; CTP:phosphatidate cytidylyltransferase; CDP-DAG synthase; CDP-DG synthetase; Similar to: HI0919, CDSA_HAEIN phosphatidate cytidylyltransferase	CDP-diglyceride synthetase CdsA protein	Phosphatidate cytidylyltransferase	identified by similarity to SP:P06466; match to protein family HMM PF01148 phosphatidate cytidylyltransferase	identified by sequence similarity; putative; ORF located using Glimmer; Blastx; COG0575 phosphatidate cytidylyltransferase synthase	Code: I; COG: COG0575 CDP-diglyceride synthetase	Phosphatidate cytidylyltransferase	Code: I; COG: COG0575 CDP-diglyceride synthetase	phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase	CDP-diglyceride synthetase COG0575	Code: I; COG: COG0575 CDP-diglyceride synthetase	phosphatidate cytidylyltransferase EC 2.7.7.41	phosphatidate cytidylyltransferase	phosphatidate cytidylyltransferase	phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase precursor	Phosphatidate cytidylyltransferase inner membrane protein	phosphatidate cytidylyltransferase (CDP-diglyceride synthetase)	Phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase inner membrane protein	CDP-diglyceride synthetase	
CHLTR00464	Cytidylate kinase	Cytidylate kinase	Cytidylate kinase	Cmk protein	Cytidylate kinase	cytidine monophosphate kinase	Cytidylate kinase	Cytidylate kinase	Cytidylate kinase	conserved gene cytidylate kinase	Cytidylate kinase	Cytidylate kinase	identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017 cytidylate kinase	Cytidylate kinase	Cytidylate kinase	identified by similarity to SP:P43892; match to protein family HMM PF02224; match to protein family HMM TIGR00017 cytidylate kinase	Cytidylate kinase	cytidylate kinase	Cytidylate kinase	Cytidylate kinase	Cytidylate kinase	Cytidylate kinase	Cytidylate kinase	Cytidylate kinase	Mb1739, cmk, len: 230 aa. Equivalent to Rv1712, len: 230 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 230 aa overlap). Probable cmk, cytidylate kinase (EC 2.7.4.14), highly similar to many e.g. KCY_ECOLI|P23863 cytidylate kinase from Escherichia coli (227 aa), FASTA scores: opt: 534, E (): 0, (40.3% identity in 221 aa overlap). Contains PS00017 ATP/GTP-binding site motif A (P-loop). Equivalent to Z95117|MLCB1351_2 from Mycobacterium leprae (223 aa) (73.5% identity in 226 aa overlap). BELONGS TO THE CYTIDYLATE KINASE FAMILY, SUBFAMILY 1. Probable Cytidylate kinase cmk (CMP kinase) (Cytidine monophosphate kinase) (CK)	InterProMatches:IPR003136; Molecular Function: cytidylate kinase activity (GO:0004127), Molecular Function: ATP binding (GO:0005524), Biological Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism (GO:0006139) cytidylate kinase	cytidylate kinase	Cytidylate kinase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark cytidylate kinase	
CHLTR00465	Glycerol-3-P Acyltransferase	1-acylglycerol-3-phosphate O-acyltransferase	identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative	1-acyl-sn-glycerol-3-phosphate acyltransferase	Acylglycerol-3-phosphate O-acyltransferase-like protein	1-acyl-sn-glycerol-3-phosphate acyltransferase	1-acylglycerol-3-phosphate O-acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferase	Similar to Chlamydia pneumoniae glycerol-3-p acyltransferase PlsC or cpn0569 or cp0180 SWALL:Q9Z7Y4 (EMBL:AE001641) (212 aa) fasta scores: E(): 1e-58, 61.39% id in 215 aa conserved hypothetical protein	hypothetical protein, similar to acylglycerol-3-phosphate O-acyltransfera homolog	Ortholog of S. aureus MRSA252 (BX571856) SAR1804 putative acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferase	hypothetical protein, similar to acylglycerol-3-phosphate O-acyltransfera homolog	putative 1-acyl-sn-glycerol-3-phosphate acyltransferase	identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530 1-acylglycerol-3-phosphate O-acyltransferase domain protein	Similar to Streptomyces coelicolor putative acyltransferase SCO1228 or 2SCG1.03 SWALL:Q9FCD9 (EMBL:AL391014) (240 aa) fasta scores: E(): 7.8e-41, 47.03% id in 219 aa, and to Limnanthes alba 1-acyl-sn-glycerol-3-phosphate acyltransferase SWALL:PLSC_LIMAL (SWALL:Q42868) (281 aa) fasta scores: E(): 2.4e-07, 30% id in 160 aa putative acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferase	1-acylglycerol-3-phosphate O-acyltransferase (1-acyl-sn-glycerol-3-phosphate acyltransferase)	Similar to Bacillus subtilis hypothetical protein YhdO TR:O07584 (EMBL:Y14082) (199 aa) fasta scores: E(): 3.4e-31, 47.03% id in 202 aa, and to Lactococcus lactis hypothetical protein YbbE TR:Q9CJ88 (EMBL:AE006249) (213 aa) fasta scores: E(): 5.1e-18, 37.81% id in 201 aa putative acyltransferase	phospholipid/glycerol acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferase	identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative	identified by similarity to SP:Q49402; match to protein family HMM PF01553; match to protein family HMM TIGR00530 1-acyl-sn-glycerol-3-phosphate acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferases	1-acyl-sn-glycerol-3-phosphate acyltransferase identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530	Phospholipid/glycerol acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferase identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530	
CHLTR00466	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	arginyl-tRNA-synthetase	Arginyl-tRNA synthetase	arginyl-tRNA synthetase	Arginyl-tRNA synthetase	arginyl-tRNA synthetase	Arginyl-tRNA synthetase	ArgS COG0018 Arginyl-tRNA synthetase arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	IPR001278: Arginyl-tRNA synthetase, class Ic; IPR001412: Aminoacyl-tRNA synthetase, class I arginine tRNA synthetase	similar to Salmonella typhi CT18 arginyl-tRNA synthetase arginyl-tRNA synthetase	Similar to Escherichia coli arginyl-tRNA synthetase ArgS SWALL:SYR_ECOLI (SWALL:P11875) (577 aa) fasta scores: E(): 6.1e-40, 39.1% id in 578 aa, and to Chlamydia muridarum arginyl-tRNA synthetase ArgS or tc0739 SWALL:SYR_CHLMU (SWALL:Q9PJT8) (563 aa) fasta scores: E(): 5.8e-170, 74.51% id in 561 aa putative arginyl-tRNA synthetase	Arginyl-tRNA synthetase	identified by match to PFAM protein family HMM PF00750 arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	best blastp match gb|AAK34788.1| (AE006633) putative arginyl-tRNA synthetase [Streptococcus pyogenes M1 GAS] putative arginyl-tRNA synthetase	arginyl-tRNA synthetase	Arginyl-tRNA synthetase(arginine--tRNA ligase) (ARGRS)	arginyl-tRNA synthetase	
CHLTR00467	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2	Similar to Chlamydia pneumoniae udp-N-acetylglucosamine 1-carboxyvinyltransferase MurA or cpn0571 or cp0178 SWALL:MURA_CHLPN (SWALL:Q9Z7Y2) (458 aa) fasta scores: E(): 1.1e-133, 75.45% id in 440 aa, and to Bacillus subtilis udp-N-acetylglucosamine 1-carboxyvinyltransferase 1 MurA SWALL:MUA1_BACSU (SWALL:P70965) (436 aa) fasta scores: E(): 8.7e-35, 36.57% id in 432 aa putative peptidoglycan synthesis protein	UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1	identified by match to PFAM protein family HMM PF00275 UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	Similar to Bacillus subtilis UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 MurAa or MurA SWALL:MUA1_BACSU (SWALL:P70965) (436 aa) fasta scores: E(): 3.9e-41, 35.94% id in 434 aa, and to Streptomyces coelicolor UDP-N-acetylglucosamine transferase MurA or SCO2949 or SCE59.08 SWALL:Q9L1U5 (EMBL:AL138851) (448 aa) fasta scores: E(): 5e-102, 58.73% id in 441 aa UDP-N-acetylglucosamine 1-carboxyvinyltransferase	identified by match to protein family HMM PF00275; match to protein family HMM TIGR01072 UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase II	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase EC 2.5.1.7	UDP-N-acetylglucosamine 1-carboxyvinyltransfera se	UDP-N-acetylglucosamine enolpyruvyl transferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase Adds enolpyruvyl to UDP-N-acetylglucosamine as acomponent of cell wall formation Orthologue of BL1267	UDP-N-acetylglucosamine 1-carboxyvinyltransferase TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KEGG: lxx:Lxx09670 UDP-N-acetylglucosamine enolpyruvyl transferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KEGG: fra:Francci3_3613 UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	Conserved uncharacterized protein	UDP-N-acetylglucosamine enolpyruvyl transferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase equivalent gene in S.pneumoniae TIGR4 = SP1081; equivalent gene in S.pneumoniae R6 = spr0989; identified by match to protein family HMM PF00275; match to protein family HMM TIGR01072	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine enolpyruvyl transferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Evidence 2b : Function of strongly homologous gene; Product type e : enzyme	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	
CHLTR00468	Translocated actin-recruiting phosphoprotein	Clumping factor A	fibrinogen-binding protein A, clumping factor	hypothetical protein	hypothetical protein	Previously sequenced as Staphylococcus aureus clumping factor ClfA TR:Q53653 (EMBL:Z18852) (933 aa) fasta scores: E(): 2.3e-215, 86.297% id in 1029 aa.  Similar to the C-terminal region of Staphylococcus epidermidis putative cell-surface adhesin SdrF TR:Q9KI14 (EMBL:AF245041) (1733 aa) fasta scores: E(): 1.5e-94, 46.230% id in 1008 aa. Contains an inperfect dipetide repeat (SD x181), residues 599 to 960. CDS contains extra copies of the dipeptide repeat compared to the previously sequenced clumping factor ClfA. Probable LPXTG-sorted surface protein clumping factor	identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 clumping factor A	clumping factor A identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168	transcript_id=ENSDNOT00000005763	hypothetical protein	transcript_id=ENSETET00000005626	transcript_id=ENSGACT00000009109	PE-PGRS family protein precursor	clumping factor	transcript_id=ENSEEUT00000014624	transcript_id=ENSSTOT00000015790	Filamentous haemagglutinin family outer membrane protein	transcript_id=ENSCPOT00000000837;	tarp protein	transcript_id=ENSSART00000000953	hypothetical protein KEGG: mmc:Mmcs_3642 PE-PGRS family protein	Hypothetical protein	Hypothetical protein	Putative outer membrane protein	Magnaporthe grisea hypothetical protein	Botrytis cinerea predicted protein	
CHLTR00469	UPF0082 protein CT_457	UPF0082 protein NE0210	UPF0082 protein MYCGA1330	conserved hypothetical protein	UPF0082 protein RSc2190	UPF0082 protein plu2109	Similar to conserved hypothetical protein hypothetical protein	conserved gene YebC	Similar to conserved hypothetical protein hypothetical protein	UPF0082 protein lp_2253	UPF0082 protein UU295	hypothetical protein	identified by similarity to PIR:AC3292; match to protein family HMM PF01709; match to protein family HMM TIGR01033 conserved hypothetical protein TIGR01033	UPF0082 protein CV_3123	conserved hypothetical protein	UPF0082 protein XF_1906	UPF0082 protein MAP_1030	Putative uncharacterized protein	UPF0082 protein Rv2603c/MT2678	Mb2635c, -, len: 251 aa. Equivalent to Rv2603c, len: 251 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 251 aa overlap). Highly conserved hypothetical protein, equivalent to Q49645|YQ03_MYCLE|ML0475|U1177B|B1177_C2_181 HYPOTHETICAL 26.6 KDA PROTEIN from Mycobacterium leprae (251 aa), FASTA scores: opt: 1514, E(): 2.2e-84, (92.45% identity in 251 aa overlap). Also highly similar to Q9L288|SCL2.11c HYPOTHETICAL 26.8 KDA PROTEIN from Streptomyces coelicolor (250 aa), FASTA scores: opt: 1268, E(): 1.5e-69, (76.7% identity in 249 aa overlap); Q9AE12|YFCA HYPOTHETICAL STRUCTURAL PROTEIN from Corynebacterium glutamicum (Brevibacterium flavum) (251 aa), FASTA scores: opt: 1231, E(): 2.6e-67, (72.9% identity in 251 aa overlap); O83487|Y474_TREPA|TP0474 HYPOTHETICAL PROTEIN from Treponema pallidum (245 aa), FASTA scores: opt: 780, E(): 4.4e-40, (47.75% identity in 245 aa overlap); P24237|YEBC_ECOLI|B1864 PROTEIN YEBC from Escherichia coli strain K12 (246 aa), FASTA scores: opt: 776, E(): 7.6e-40, (47.8% identity in 249 aa overlap); etc. HIGHLY CONSERVED HYPOTHETICAL PROTEIN	conserved protein YrbC	conserved hypothetical protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	COG0217 Uncharacterized conserved protein hypothetical protein	UPF0082 protein TTHA0821	IPR002876: Protein of unknown function DUF28 putative cytoplasmic protein	Uncharacterized conserved protein, YebC family	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Similar to Chlamydia muridarum hypothetical protein Tc0742 tc0742 SWALL:Y742_CHLMU (SWALL:Q9PJT5) (238 aa) fasta scores: E(): 1.4e-79, 85.65% id in 237 aa conserved hypothetical protein	
CHLTR00470	Amino Group Acetyl Transferase	ribosomal-protein-alanine acetyltransferase	amino group acetyl transferase	acetyltransferase, GNAT family identified by match to protein family HMM PF00583	ribosomal-protein-alanine acetyltransferase	GCN5-related N-acetyltransferase	GCN5-related N-acetyltransferase	Ribosomal-protein-alanine acetyltransferase	Ribosomal-protein-alanine acetyltransferase	Acetyltransferase, GNAT family	Acetyltransferase, GNAT family	Acetyltransferase, GNAT family	Acetyltransferase, GNAT family	Ribosomal-protein-alanine acetyltransferase	Acetyltransferase, GNAT family	Acetyltransferase, GNAT family	

CHLTR00472	SWIB (YM74) complex protein	conserved hypothetical protein	swiB complex protein	hypothetical protein COG5531 SWIB-domain-containing proteins implicated in chromatin remodeling	SWIB/MDM2 domain protein PFAM: SWIB/MDM2 domain protein KEGG: pol:Bpro_2811 SWIB complex, BAF60b	SWIB/MDM2 domain protein precursor	DNA topoisomerase domain protein identified by match to protein family HMM PF02201	SwiB complex protein YM72	SWIB/MDM2 domain protein PFAM: SWIB/MDM2 domain protein KEGG: pol:Bpro_2811 SWIB complex, BAF60b	Putative uncharacterized protein	SWIB/MDM2 domain protein	SWIB/MDM2 domain protein	SWIB/MDM2 domain protein	Putative uncharacterized protein	Putative uncharacterized protein	SWIB/MDM2 domain protein	SWIB/MDM2 domain protein	SWIB/MDM2 domain protein	SWIB/MDM2 domain protein	SWIB/MDM2 domain protein	SWIB/MDM2 domain protein PFAM: SWIB/MDM2 domain protein; KEGG: mex:Mext_3127 SWIB/MDM2 domain-containing protein	SWIB/MDM2 domain protein	SWIB/MDM2 domain protein	SWIB/MDM2 domain protein	Putative uncharacterized protein	SWIB/MDM2 domain protein	SWIB/MDM2 domain protein	Putative uncharacterized protein	
CHLTR00473	Uncharacterized metallophosphoesterase CT_461	Similar to Chlamydia pneumoniae hypothetical protein cpn0578/cp0170/cpj0578 precursor cpn0578 or cp0170 or cpj0578 SWALL:Y578_CHLPN (SWALL:Q9Z7X6) (320 aa) fasta scores: E(): 6.5e-86, 62.92% id in 321 aa putative exported protein	Evidence 5 : No homology to any previously reported sequences hypothetical protein; putative membrane protein	Similar to Clostridium tetani phosphoesterase CTC01157 SWALL:Q895V9 (EMBL:AE015940) (344 aa) fasta scores: E(): 2.8e-10, 25.07% id in 319 aa, and to Campylobacter jejuni hypothetical protein CJ0846 SWALL:Y846_CAMJE (SWALL:Q9PP77) (374 aa) fasta scores: E(): 3.5e-10, 26.81% id in 399 aa putative membrane protein	calcineurin-like phosphoesterase	Code: R; COG: COG1408 conserved hypothetical protein	Predicted phosphohydrolases	Code: R; COG: COG1408 conserved hypothetical protein	predicted phosphohydrolase COG1408	Twin-arginine translocation pathway signal TIGRFAM: Twin-arginine translocation pathway signal: (0.082) PFAM: metallophosphoesterase: (1.4e-18) KEGG: dra:DR2345 hypothetical protein, ev=1e-89, 59% identity	phosphohydrolase	Ser/Thr protein phosphatase family protein	Ser/Thr protein phosphatase family protein identified by match to protein family HMM PF00149	metallo-phosphoesterase	putative exported phosphoesterase	Metallophosphoesterase	Metallophosphoesterase	calcineurin-like phosphoesterase	Putative uncharacterized protein	Metallophosphoesterase	Metallophosphoesterase	Putative integral membrane protein	YkuE	Metallophosphoesterase precursor	Metallophosphoesterase precursor	Predicted phosphatase	Metallophosphoesterase	
CHLTR00474	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	4-diphosphocytidyl-2C-methyl-D-erythritol synthase	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	Biological Process: isoprenoid biosynthesis (GO:0008299), Molecular Function: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase activity (GO:0008699) 4-diphosphocytidyl-2C-methyl-D-erythritol synthase	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	IPR001228: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase 4-phosphocytidyl-2C-methyl-D-erythritol synthase	similar to Salmonella typhi Ty2 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	Similar to Escherichia coli 2-c-methyl-D-erythritol 4-phosphate cytidylyltransferase IspD or SWALL:ISPD_ECOLI (SWALL:Q46893) (235 aa) fasta scores: E(): 1.6e-09, 30.76% id in 221 aa, and to Chlamydia pneumoniae 2-c-methyl-D-erythritol 4-phosphate cytidylyltransferase IspD or cpn0579 or cp0169 SWALL:ISPD_CHLPN (SWALL:Q9Z7X5) (211 aa) fasta scores: E(): 1.3e-55, 64.11% id in 209 aa putative 2-c-methyl-D-erythritol 4-phosphate cytidylyltransferase	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	identified by match to protein family HMM PF01128; match to protein family HMM TIGR00453 4-diphosphocytidyl-2C-methyl-D-erythritol synthase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; Similar to: HI0672, ISPD_HAEIN 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	Similar to Porphyromonas gingivalis W83 4-diphosphocytidyl-2C-methyl-D-erythritol synthase IspD or PG1434 SWALL:AAQ66487 (EMBL:AE017177) (222 aa) fasta scores: E(): 3.2e-34, 49.09% id in 220 aa, and to Bacillus subtilis 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IspD or BSU00900 SWALL:ISPD_BACSU (SWALL:Q06755) (232 aa) fasta scores: E(): 1.6e-19, 37.66% id in 223 aa putative terpenoid biosynthesis-related protein	4-diphosphocytidyl-2-methyl-D-erithritol synthase IspD protein	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	4-diphosphocytidyl-2-methyl-D-erithritol synthase	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	
CHLTR00476	Phosphoglycolate Phosphatase	Similar to Chlamydia pneumoniae phosphoglycolate phosphatase cpn0581 or cpj0581 SWALL:Q9Z7X3 (EMBL:AE001642) (230 aa) fasta scores: E(): 2.3e-44, 50.66% id in 227 aa, and to Chlamydia pneumoniae hydrolase, haloacid dehalogenase-like family cp0167 SWALL:Q9K2C9 (EMBL:AE002178) (244 aa) fasta scores: E(): 2.5e-44, 50.66% id in 227 aa conserved hypothetical protein	HAD-superfamily hydrolase, subfamily IA, variant 1	phosphoglycolate phosphatase	HAD-superfamily hydrolase subfamily IA, variant 3	beta-phosphoglucomutase	HAD-superfamily hydrolase, subfamily IA, variant 3 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1 PFAM: Haloacid dehalogenase domain protein hydrolase KEGG: cte:CT1696 hydrolase, haloacid dehalogenase-like family	HAD-superfamily hydrolase, subfamily IA, variant 3 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1 PFAM: Haloacid dehalogenase domain protein hydrolase KEGG: gsu:GSU0184 HAD-superfamily hydrolase, subfamily IA, variant 1	hydrolase, haloacid dehalogenase-like family	HAD-superfamily hydrolase	Probable hydrolase	HAD-superfamily hydrolase, subfamily IA, variant 3	HAD-superfamily hydrolase, subfamily IA, variant 3	Beta-phosphoglucomutase	Hydrolase, haloacid dehalogenase-like family	Hydrolase, haloacid dehalogenase-like family	Beta-phosphoglucomutase	HAD-superfamily hydrolase, subfamily IA, variant 3	HAD-superfamily hydrolase, subfamily IA, variant 3	CbbY	HAD-superfamily hydrolase, subfamily IA, variant 3	HAD-superfamily hydrolase, subfamily IA, variant 3	Beta-phosphoglucomutase	Putative phosphorylated carbohydrates phosphatase	HAD-superfamily hydrolase, subfamily IA, variant 3	Hydrolase, haloacid dehalogenase-like family	HAD-superfamily hydrolase, subfamily IA, variant 3	
CHLTR00475	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA-pseudouridine synthase I	conserved gene tRNA pseudouridine synthase A	tRNA-pseudouridine synthase I	tRNA pseudouridine synthase A	identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071 tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase	identified by similarity to SP:P07649; match to protein family HMM PF01416; match to protein family HMM TIGR00071 tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A (pseudouridylate synthase I)	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071 tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	Pseudouridylate synthase	tRNA pseudouridine synthase A	Mb3484c, truA, len: 256 aa. Equivalent to Rv3455c, len: 256 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 256 aa overlap). Probable truA, pseudouridine synthase A (EC 4.2.1.70), equivalent to Q9X796|TRUA_MYCLE|ML1955|MLCB1222.25c TRNA PSEUDOURIDINE SYNTHASE A from Mycobacterium leprae (249 aa), FASTA scores: opt: 1345, E(): 3.2e-80, (77.25% identity in 246 aa overlap). Also highly similar to others e.g.  O86776|TRUA_STRCO|SC6G4.09 from Streptomyces coelicolor (284 aa), FASTA scores: opt: 595, E(): 1.7e-31, (49.8% identity in 259 aa overlap); Q9RS37|DR2290 from Deinococcus radiodurans (280 aa), FASTA scores: opt: 383, E(): 1e-17, (41.2% identity in 216 aa overlap); Q9PJT0|TRUA_CHLMU|TC0748 from Chlamydia muridarum (267 aa), FASTA scores: opt: 334, E(): 1.5e-14, (37.65% identity in 231 aa overlap); P07649|TRUA_ECOLI|HIST|ASUC|LEUK|B2318 from Escherichia coli strain K12 (270 aa), FASTA scores: opt: 315, E(): 2.5e-13, (33.35% identity in 240 aa overlap); etc. BELONGS TO THE TRUA FAMILY OF PSEUDOURIDINE SYNTHASES. PROBABLE TRNA PSEUDOURIDINE SYNTHASE A TRUA (PSEUDOURIDYLATE SYNTHASE I) (PSEUDOURIDINE SYNTHASE I) (URACIL HYDROLYASE)	InterProMatches:IPR001406; Molecular Function: pseudouridylate synthase activity (GO:0004730), Biological Process: tRNA processing (GO:0008033) pseudouridylate synthase I	pseudouridylate synthase I	
CHLTR00477	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00478	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00479	Sensor protein	Sensor protein	Sensor protein	similar to sensor histidine kinase hypothetical protein	conserved gene sensor kinase HydH	similar to sensor histidine kinase hypothetical protein	Two-component sensor histidine kinase VicK	Sensor protein	Sensor protein	Similar to Chlamydia trachomatis 2-component regulatory system-sensor histidine kinase atos or ct467 SWALL:O84473 (EMBL:AE001320) (352 aa) fasta scores: E(): 4.9e-85, 64.82% id in 344 aa putative 2-component regulatory system-sensor histidine kinase	Sensor protein	Sensor protein	Sensor protein	best blastp match gb|AAK33524.1| (AE006510) two-component sensor histidine kinase [Streptococcus pyogenes M1 GAS] two-component sensor histidine kinase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type r : regulator sensor protein	FlrB; two-component sensor kinase	Sensor protein	Signal transduction histidine kinase (contains PAS domain)	Sensory transduction histidine kinase	two-component system regulatory protein	Phosphate regulon sensor protein phoR	sensor histidine kinase	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 sensory box histidine kinase	identified by similarity to GB:AAA93529.1; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518 sensory box histidine kinase FleS	PAS	two-component sensor histidine kinase	signal-transducing histidine kinase	Code: T; COG: COG0642 positive and negative sensor protein for pho regulon	identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 sensory box histidine kinase	
CHLTR00480	2-component regulatory system-ATPase	conserved gene sigma 54-dependent response regulator	similar to two-component response regulator hypothetical protein	Similar to Chlamydia pneumoniae sigma-54 dependent response regulator cp0162 SWALL:Q9K2D1 (EMBL:AE002177) (394 aa) fasta scores: E(): 6.5e-119, 77.97% id in 386 aa putative sigma-54 dependent response regulator	Sigma-54 transcriptional regulatory protein	Similar to: HI0410, TYRR_HAEIN transcriptional regulatory protein TyrR	pfam: Sigma-54 interaction domain, COG3829: Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains (RocR) Torf protein	putative two-component transcriptional regulator	sigma54 specific transcriptional regulator, Fis family	sigma 54-dependent transcriptional activator containing CheY-like receiver domain Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains COG2204	nitrogen regulation two-component transcription regulatory protein	Sigma-54 factor, interaction region	Sigma-54 transcriptional regulatory protein	sigma-54 factor, interaction region	Sigma54 specific transcriptional regulator, Fis family	Response regulator	Sigma-54 transcriptional regulatory protein	Sigma54 specific transcriptional regulator, Fis family	two component, sigma54 specific, transcriptional regulator, Fis family PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5 SMART: AAA ATPase KEGG: gsu:GSU1320 sigma-54 dependent DNA-binding response regulator	sigma-54 dependent DNA-binding response regulator identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199	2-component regulatory system-ATPase	Sigma-54 dependent transcriptional regulator/response regulator FleR	sigma-54 dependent DNA-binding response regulator identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954	sigma-54 factor, interaction domain-containing protein PFAM: sigma-54 factor, interaction domain-containing protein SMART: AAA ATPase KEGG: rsp:RSP_0051 TorF protein	sigma54 specific transcriptional regulator, Fis family PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type SMART: AAA ATPase KEGG: sdn:Sden_3661 sigma-54 factor, interaction region	Sigma-54 transcriptional regulatory protein	two component, sigma54 specific, transcriptional regulator, Fis family PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5 SMART: AAA ATPase KEGG: sat:SYN_02214 response regulator with sigma 54 interaction domain	Sigma-54 interaction domain/Fis family transcriptional regulator domain protein	Transcriptional regulatory protein TyrR	
CHLTR00481	Putative uncharacterized protein	conserved hypothetical protein	hypothetical membrane associated protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00483	Putative uncharacterized protein	conserved hypothetical protein	hypothetical membrane associated protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00482	DNA repair protein recO	conserved hypothetical protein	recO-related protein/DNA repair	DNA repair protein	DNA repair protein	DNA repair protein	DNA repair protein recO	


CHLTR00484	Putative uncharacterized protein	Similar to conserved hypothetical protein hypothetical protein	conserved gene hypothetical protein	Similar to conserved hypothetical protein hypothetical protein	Similar to Chlamydia pneumoniae yage family yage or cpn0591 or cp0157 SWALL:Q9Z7W3 (EMBL:AE001643) (216 aa) fasta scores: E(): 2.9e-73, 84.57% id in 214 aa conserved hypothetical protein	Putative uncharacterized protein	Uncharacterized conserved protein	Protein of unknown function DUF155	transcript_id=ENSOCUT00000002512	conserved hypothetical protein	transcript_id=ENSDNOT00000001801	unknown	uncharacterized conserved protein COG1723	conserved hypothetical protein	protein of unknown function DUF155	transcript_id=ENSGACT00000015323	conserved hypothetical protein	Hypothetical protein	Uncharacterized conserved protein	transcript_id=ENSSTOT00000013139	protein of unknown function DUF155 PFAM: protein of unknown function DUF155 KEGG: nha:Nham_0703 protein of unknown function DUF155	hypothetical membrane spanning protein	transcript_id=ENSSART00000012855	hypothetical conserved protein, possible transmembrane domain near C-terminus	predicted protein	Hypothetical protein	Hypothetical protein	Putative uncharacterized protein	
CHLTR00486	Uncharacterized protein CT_474	LysM motif repeat domain	peptidoglycan binding protein contains LysM domain	Putative membrane protein	Putative membrane protein	Putative membrane protein	
CHLTR00485	UPF0161 protein CT_473	UPF0161 protein RSc0003	UPF0161 protein plu4907	identified by similarity to GB:CAE35356.1 conserved hypothetical protein TIGR00278	conserved hypothetical protein	UPF0161 protein Pro_0410	Similar to Chlamydia pneumoniae hypothetical protein cpn0592/cp0156/cpj0592 cpn0592 or cp0156 or cpj0592 SWALL:Y592_CHLPN (SWALL:Q9Z7W2) (103 aa) fasta scores: E(): 3.7e-25, 62.37% id in 101 aa conserved hypothetical protein	UPF0161 protein gbs1641	UPF0161 protein XAC2359	conserved hypothetical protein	identified by Glimmer2; putative conserved hypothetical protein TIGR00278	Hypothetical protein	Ortholog of S. aureus MRSA252 (BX571856) SAR1875 conserved hypothetical protein	conserved hypothetical protein	conserved hypothetical protein	Evidence 5 : No homology to any previously reported sequences hypothetical protein; putative conserved domain	conserved hypothetical protein	Uncharacterized conserved protein, HlyA family	conserved hypothetical protein; possible alpha-hemolysin	hypothetical protein	hypothetical protein, similar to alpha-hemolysin	Protein of unknown function DUF37	Similar to Bacillus subtilis hypothetical protein YtjA SW:YTJA_BACSU (O34601) (75 aa) fasta scores: E(): 2.7e-20, 70.27% id in 74 aa, and to Bacillus halodurans hypothetical protein BH2828 SW:YS28_BACHD (Q9K921) (75 aa) fasta scores: E(): 1.1e-18, 64.86% id in 74 aa conserved hypothetical protein	Best Blastp Hit: pir||E81973 hypothetical protein NMA0549 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379288|emb|CAB83842.1| (AL162753) hypothetical protein NMA0549 [Neisseria meningitidis] COG0759 Uncharacterized ACR, YidD family conserved hypothetical protein	identified by similarity to SP:Q8DSR1; match to protein family HMM PF01809; match to protein family HMM TIGR00278 conserved hypothetical protein TIGR00278	UPF0161 protein PMN2A_1745	identified by similarity to OMNI:NTL01BH2832; match to protein family HMM PF01809; match to protein family HMM TIGR00278 conserved hypothetical protein TIGR00278	similar to gi|57284766|gb|AAW36860.1| [Staphylococcus aureus subsp. aureus COL], percent identity 81 in 74 aa, BLASTP E(): 2e-30 conserved hypothetical protein	UPF0161 protein Pcar_3144	
CHLTR00487	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase, beta subunit	conserved gene phenylalanyl tRNA synthetase, beta subunit	Phenylalanyl-tRNA synthetase, beta subunit	Phenylalanyl-tRNA synthetase beta chain	identified by match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472 phenylalanyl-tRNA synthetase, beta subunit	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	phenylalanyl-tRNA synthetase	identified by similarity to SP:P07395; match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472 phenylalanyl-tRNA synthetase, beta subunit	Phenylalanyl-tRNA synthetase beta chain	phenylalanyl-tRNA synthetase beta subunit	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	identified by similarity to SP:P56145; match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472 phenylalanyl-tRNA synthetase, beta subunit	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase	Phenylalanyl-tRNA synthetase beta chain	Mb1677, pheT, len: 831 aa. Equivalent to Rv1650, len: 831 aa, from Mycobacterium tuberculosis strain H37Rv, (99.9% identity in 831 aa overlap). pheT, Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20), similar to several e.g. SYFB_ECOLI|P07395 from Escherichia coli (795 aa), FASTA scores: opt: 995, E(): 0, (31.8% identity in 847 aa overlap). BELONGS TO THE PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN FAMILY - SUBFAMILY 1. Phenylalanyl-tRNA synthetase, beta chain pheT	InterProMatches:IPR004532; Molecular Function: phenylalanine-tRNA ligase activity (GO:0004826), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: phenylalanyl-tRNA aminoacylation (GO:0006432) phenylalanyl-tRNA synthetase (beta subunit)	phenylalanyl-tRNA synthetase beta chain	
CHLTR00488	Putative uncharacterized protein	conserved hypothetical protein	hypothetical membrane associated protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00490	Oligopeptide Permease	ABC transporter of peptides	OppC oligopeptide transport system permease protein	Oligonucleotide transport system permease precursor	Oligonucleotide transport system permease precursor	Oligonucleotide transport system permease	
CHLTR00489	Methylated-DNA protein-cysteine methyltransferase	methylated-DNA--protein-cysteine S-methyltransferase EC 2.1.1.63	o6-methylguanine-DNA methyltransferase	Putative DNA methyltransferase	Putative DNA methyltransferase	Putative DNA methyltransferase	
CHLTR00491	Oligopeptide Permease	ABC transporter of peptides	Permease component of an ABC transporter complex inner membrane protein	Permease component of an ABC transporter complex inner membrane protein	OppB oligopeptide transport system permease protein	Binding-protein-dependent transport systems inner membrane component	Oligopeptide transport system membrane permease	Oligopeptide transport system membrane permease	Binding-protein-dependent transport systems inner membrane component	ABC-type dipeptide/oligopeptide transport system, permease component	Oligopeptide transport system membrane permease	Putative peptide ABC transporter, permease protein	
CHLTR00492	Oligopeptide Binding Lipoprotein	ABC transporter periplasmic oligopeptide binding lipoprotein component	OppA oligopeptide-binding protein	4-phytase precursor	Oligopeptide transport system, binding protein precursor	Oligopeptide transport system, binding protein precursor	Extracellular solute-binding protein family 5	Bacterial extracellular solute-binding protein, family 5, putative	Probable ABC transporter substrate binding protein	Oligopeptide transport system, binding protein	Putative peptide ABC transporter, periplasmic peptide-binding protein	Extracellular solute-binding protein family 5	

CHLTR00494	Putative uncharacterized protein	xylanase/chitin deacetilase	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Polysaccharide deacetylase domain protein	

CHLTR00495	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00496	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative membrane protein	Putative membrane protein	Putative membrane protein	
CHLTR00497	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative membrane protein precursor	Putative membrane protein precursor	Putative membrane protein	
CHLTR00496	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative membrane protein	Putative membrane protein	Putative membrane protein	
CHLTR00498	Ferrochelatase	Ferrochelatase	Ferrochelatase	similar to Protoheme ferro-lyase(ferrochelatase) hypothetical protein	conserved gene ferrochelatase	similar to Protoheme ferro-lyase(ferrochelatase) hypothetical protein	Ferrochelatase	ferrochelatase	identified by match to protein family HMM PF00762; match to protein family HMM TIGR00109 ferrochelatase	Ferrochelatase	Ferrochelatase	Ferrochelatase	identified by similarity to SP:P56107; match to protein family HMM PF00762; match to protein family HMM TIGR00109 ferrochelatase	Ferrochelatase	protoheme ferro-lyase ferrochelatase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ferrochelatase	Ferrochelatase	IPR001015: Ferrochelatase ferrochelatase	Protoheme ferro-lyase (ferrochelatase)	similar to Salmonella typhi CT18 ferrochelatase ferrochelatase	Similar to Chlamydia pneumoniae ferrochelatase hemH or cpn0603 or cp0144 SWALL:HEMZ_CHLPN (SWALL:Q9Z7V1) (327 aa) fasta scores: E(): 4.2e-76, 58.28% id in 314 aa, and to Escherichia coli ferrochelatase hemH SWALL:HEMZ_ECOLI (SWALL:P23871) (320 aa) fasta scores: E(): 9.8e-15, 27.07% id in 325 aa putative ferrochelatase	Ferrochelatase	similar to BRA0076, ferrochelatase HemH, ferrochelatase	Ferrochelatase	Probable ferrochelatase	Ferrochelatase	Putative ferrochelatase	Ferrochelatase	Similar to sp|Q92FV4|HEMZ_RICCN sp|Q9ZC84|HEMZ_RICPR; Ortholog to ERGA_CDS_06400 Ferrochelatase	
CHLTR00499	Glutamine Binding Protein	Similar to: HI1080, YA80_HAEIN probable amino-acid ABC transporter binding protein	identified by similarity to SP:P30860; similarity to SP:P39174 amino acid ABC transporter, periplasmic amino acid-binding protein	amino acid ABC transporter, periplasmic aminoacid-binding protein	ABC transporter	Extracellular solute-binding protein, family 3 precursor	amino acid ABC transporter, periplasmic amino acid-binding protein	extracellular solute-binding protein, family 3	extracellular solute-binding protein, family 3	extracellular solute-binding protein, family 3 PFAM: extracellular solute-binding protein, family 3 SMART: ionotropic glutamate receptor KEGG: bcn:Bcen_2527 extracellular solute-binding protein, family 3	glutamine-binding protein	CTP synthetase	Probable amino-acid ABC transporter binding protein	Extracellular solute-binding protein, family 3 precursor	Extracellular solute-binding protein family 3	Glutamine-binding protein	Putative uncharacterized protein	Extracellular solute-binding protein, family 3 precursor	Glutamine-binding protein	periplasmic solute-binding protein	pseudo	Extracellular solute-binding protein family 3	Probable amino acid ABC transporter substrate binding protein	Extracellular solute-binding protein family 3	Extracellular solute-binding protein family 3	Glutamine-binding protein	Putative amino acid ABC trasnporter, periplasmic amino acid-binding protein	Amino acid ABC transporter, periplasmic binding protein	
CHLTR00500	Methylase	Possible N6-adenine-specific methylase	Similar to methyltransferase	YhhF protein	conserved hypothetical protein	Similar to putative methylase YhhF of Escherichia coli	Similar to methyltransferase proteins hypothetical protein	conserved gene N6-adenine specific methylase	Similar to methyltransferase proteins hypothetical protein	N6-adenine-specific methylase	identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 conserved hypothetical protein TIGR00095	Methyltransferase	hypothetical protein	identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 methyltransferase, putative	Putative uncharacterized protein	methyltransferase, putative	Putative uncharacterized protein	Hypothetical protein SE0823	DNA METHYLASE	identified by similarity to OMNI:NTL01CJ01398; match to protein family HMM PF03602; match to protein family HMM TIGR00095 site-specific DNA methyltransferase, putative	Methylase protein	Adenine-specific DNA methylase	N6-adenine-specific DNA methylase	COG0742 N6-adenine-specific methylase hypothetical protein	Methyltransferase	Putative uncharacterized protein ywdG	IPR002052: N-6 Adenine-specific DNA methylase; IPR004398: Conserved hypothetical protein 95 putative methyltransferase	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Similar to Chlamydia trachomatis methylase yhhf or ct487 SWALL:O84494 (EMBL:AE001322) (190 aa) fasta scores: E(): 7.5e-45, 66.31% id in 187 aa conserved hypothetical protein	
CHLTR00501	Putative uncharacterized protein	Similar to Chlamydia pneumoniae ct488 hypothetical protein cpn0606 or cpj0606 or cp0141 SWALL:Q9Z7U8 (EMBL:AE001645) (246 aa) fasta scores: E(): 1.7e-71, 68.01% id in 247 aa conserved hypothetical protein	metallophosphoesterase PFAM: metallophosphoesterase: (1.2e-18) KEGG: dra:DR1119 hypothetical protein, ev=1e-100, 74% identity	conserved hypothetical protein	Ser/Thr protein phosphatase family protein identified by match to protein family HMM PF00149	Ser/Thr protein phosphatase family protein identified by match to protein family HMM PF00149	Predicted phoshohydrolase identified by match to protein family HMM PF00149	metallophosphoesterase identified by match to protein family HMM PF00149	phosphohydrolase	Metallophosphoesterase	putative phosphoesterase	Metallophosphoesterase	Metallophosphoesterase	Metallophosphoesterase	Putative phosphoesterase	Metallophosphoesterase precursor	Metallophosphoesterase	Metallophosphoesterase	Ser/Thr protein phosphatase family protein	Predicted phosphohydrolase	Ser/Thr protein phosphatase family protein	Metallophosphoesterase	metallophosphoesterase PFAM: metallophosphoesterase KEGG: rrs:RoseRS_0730 metallophosphoesterase	Predicted phosphohydrolase	Putative phosphohydrolase	Ser/Thr protein phosphatase family protein	Ser/Thr protein phosphatase family protein	Putative phosphohydrolase	Metallophosphoesterase	
CHLTR00502	Glucose-1-phosphate adenylyltransferase	Glucose-1-phosphate adenylyltransferase	glucose-1-phosphate adenylyltransferase	Glucose-1-phosphate adenylyltransferase	Similar to Chlamydia trachomatis glucose-1-p adenyltransferase GlgC or ct489 SWALL:O84496 (EMBL:AE001322) (441 aa) fasta scores: E(): 1.3e-138, 75.87% id in 427 aa, and to Solanum tuberosum glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor SWALL:GLGS_SOLTU (SWALL:P23509) (521 aa) fasta scores: E(): 3.4e-53, 35.38% id in 438 aa putative glucose-1-phosphate adenyltransferase	ADP-glucose pyrophosphorylase	ADP-glucose pyrophosphorylase	Glucose-1-phosphate adenylyltransferase	glycogen biosynthesis; first step. ATP + ALPHA-D-GLUCOSE 1-PHOSPHATE = DIPHOSPHATE + ADP-GLUCOSE.  Citation: Igarashi RY et al, Arch Biochem Biophys. 2000 Apr 1;376(1):47-58. PMID: 10729189 ADP-glucose pyrophosphorylase	Glucose-1-phosphate adenylyltransferase	glucose-1-phosphate adenylyltransferase identified by match to protein family HMM PF00483; match to protein family HMM TIGR02091	Glucose-1-phosphate adenylyltransferase	ADP-glucose pyrophosphorylase identified by match to protein family HMM PF00483	glucose-1-phosphate adenylyltransferase identified by match to protein family HMM PF00483; match to protein family HMM TIGR02091	Glucose-1-phosphate adenylyltransferase	glucose-1-phosphate adenylyltransferase EC 2.7.7.27	Glucose-1-phosphate adenylyltransferase	Glucose-1-phosphate adenylyltransferase	glucose-1-phosphate adenylyltransferase identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM TIGR02091	ADP-glucose pyrophosphorylase COG448 ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]	ADP-glucose pyrophosphorylase	glucose-1-phosphate adenylyltransferase	ADP-glucose pyrophosphorylase COG448 ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]	ADP-glucose pyrophosphorylase	Nucleotidyl transferase PFAM: Nucleotidyl transferase KEGG: rsp:RSP_2227 ADP-glucose pyrophosphorylase	Glucose-1-phosphate adenylyltransferase	Subunit of ADP-glucose pyrophosphorylase	Glucose-1-phosphate adenylyltransferase	ADP-glucose pyrophosphorylase COG448 ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]	
CHLTR00503	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00504	Transcription Termination Factor	Rho; Transcription termination factor	Transcription termination factor Rho	Rho protein	Probable transcription termination factor rho (Helicase) protein	Transcription termination factor	transcription termination factor Rho	conserved gene transcription termination factor Rho	transcription termination factor Rho	Transcription terminator factor Rho	identified by similarity to EGAD:15963; match to protein family HMM PF00006; match to protein family HMM TIGR00767 transcription termination factor Rho	identified by similarity to SP:P03002; match to protein family HMM PF00006; match to protein family HMM PF07497; match to protein family HMM PF07498; match to protein family HMM TIGR00767 transcription termination factor Rho	Transcription termination factor rho	Transcription termination factor Rho	Transcription termination factor	identified by match to protein family HMM PF00006; match to protein family HMM TIGR00767 transcription termination factor Rho	Transcription termination factor Rho	InterProMatches:IPR004665; Molecular Function: transcription termination factor activity (GO:0003715), Molecular Function: ATP binding (GO:0005524), Biological Process: transcription termination (GO:0006353) transcriptional terminator Rho	transcriptional termination factor Rho	Transcription termination factor Rho	Transcription termination factor Rho	IPR001063: Ribosomal protein L22/L17 transcription termination factor Rho; polarity suppressor	Transcription termination factor, rho	similar to Salmonella typhi CT18 transcription termination factor transcription termination factor	Similar to Chlamydia pneumoniae transcription termination factor Rho or cpn0610 or cp0137 SWALL:Q9Z7U4 (EMBL:AE001645) (464 aa) fasta scores: E(): 9.4e-159, 94.61% id in 464 aa, and to Escherichia coli, and Escherichia coli O157:H7 transcription termination factor Rho SWALL:RHO_ECOLI (SWALL:P03002) (419 aa) fasta scores: E(): 3.5e-92, 61.53% id in 416 aa putative transcription termination factor	Transcription termination factor rho	similar to BR2064, transcription termination factor Rho Rho, transcription termination factor Rho	Transcription termination factor Rho	Transcription termination factor rho	
CHLTR00505	Dephospho-CoA kinase	Dephospho-CoA kinase	Dephospho-CoA kinase	Dephospho-CoA kinase	Dephospho-CoA kinase	Similar to dephospho-CoA kinase hypothetical protein	conserved gene dephospho-CoA kinase	Similar to dephospho-CoA kinase hypothetical protein	Dephospho-CoA kinase	identified by similarity to EGAD:9512; match to protein family HMM PF01121; match to protein family HMM TIGR00152 dephospho-CoA kinase	Dephospho-CoA kinase	hypothetical protein	Dephospho-CoA kinase	dephospho-CoA kinase	Dephospho-CoA kinase	identified by match to protein family HMM PF01121; match to protein family HMM TIGR00152 dephospho-CoA kinase	Dephospho-CoA kinase	dephospho-CoA kinase; Molecular Function: ATP binding (GO:0005524) Dephospho-CoA kinase	dephospho-CoA kinase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	CoaE COG0237 Dephospho-CoA kinase dephospho-coa kinase	Dephospho-CoA kinase	IPR000764: Uridine kinase; IPR001977: Dephospho-CoA kinase putative nucleotide kinase	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Similar to Chlamydia pneumoniae dephospho-CoA kinase CoaE or cpn0611 or cp0136 SWALL:COAE_CHLPN (SWALL:Q9Z7U3) (202 aa) fasta scores: E(): 9.8e-58, 72.77% id in 202 aa probable dephospho-CoA kinase	similar to BR2070, kinase, hypothetical kinase, hypothetical	Dephospho-CoA kinase	Dephospho-CoA kinase	Dephospho-CoA kinase	
CHLTR00506	DNA Polymerase I	PolA; DNA polymerase I protein	DNA polymerase I	Probable dna polymeraseIprotein	DNA polymerase I	DNA polymerase I	conserved gene DNA polymerase I	DNA polymerase I	DNA polymerase I	identified by similarity to EGAD:108026; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593 DNA polymerase I	DNA polymerase I	DNA polymerase I	identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF01612; match to protein family HMM PF02739; match to protein family HMM TIGR00593 DNA polymerase I	DNA-directed DNA polymerase I	DNA-directed DNA polymerase I	DNA polymerase I	DNA polymerase I	DNA POLYMERASE I	DNA polymerase I 3'-5' exonuclease and polymerase domains	identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF01612; match to protein family HMM PF02739; match to protein family HMM TIGR00593 DNA polymerase type I	PolA	DNA-directed DNA polymerase	DNA polymerase I	Mb1655, polA, len: 904 aa. Equivalent to Rv1629, len: 904 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 904 aa overlap). polA, DNA polymerase I (EC 2.7.7.7). Has DNA polymerase family A signature (PS00447) at C-terminal end. FASTA best: DPO1_MYCTU|Q07700 DNA polymerase I from Mycobacterium tuberculosis (904 aa).  Some similarity to Rv2090|MTCY49.30 (393 aa), E(): 2.2e-18, (38.7% identity in 292 aa overlap). BELONGS TO DNA POLYMERASE TYPE-A FAMILY. DNA polymerase I polA	InterProMatches:IPR002298; replication and DNA repair,Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA replication (GO:0006260) DNA polymerase I	DNA-directed DNA polymerase I	DNA polymerase I	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark DNA polymerase I	DpoI DNA polymerase I	
CHLTR00507	Protease	conserved gene signal peptide peptidase	similar to putative signal peptide peptidases hypothetical protein	protease IV	identified by match to protein family HMM PF01343 peptidase, family S49	Periplasmic serine protease	Protease protein	InterProMatches:IPR004635; required for efficient processing of pre-proteins under conditions of hyper-secretion, Biological Process: proteolysis and peptidolysis (GO:0006508), Molecular Function: peptidase activity (GO:0008233) signal peptide peptidase	signal peptidase SppA	Similar to Chlamydia pneumoniae protease sohB or cpn0613 or cp0134 SWALL:Q9Z7U1 (EMBL:AE001645) (333 aa) fasta scores: E(): 1.4e-87, 69.9% id in 319 aa putative exported protease	Protease sohB	Putative PROTEASE IV	Putative protease	signal peptide peptidase SppA (protease IV)	identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706 peptidase, U7 family	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pe : putative enzyme putative protease (SohB)	COG0616 SppA periplasmic serine proteases (ClpP class) similar to NP_104359.1 protease IV	Putative signal peptide peptidase SppA	Periplasmic serine proteases (ClpP class) SppA protein	Peptidase, putative	Similar to Q87YG1 Signal peptide peptidase SppA, 36K type from Pseudomonas syringae (332 a). FASTA: opt: 839 Z-score: 1007.2 E(): 3.3e-48 Smith-Waterman score: 839; 46.622 identity in 296 aa overlap ORF ftt1746 Peptidase	predicted periplasmic serine proteases (ClpP class)	Peptidase family S49	identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706 signal peptide peptidase SppA, 36K type	identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706 signal peptide peptidase SppA, 36K type	Peptidase S49, SppA	Best Blastp Hit: emb|CAB83609.1| (AL162752) putative protease [Neisseria meningitidis] COG0616 Periplasmic serine proteases putative protease	similar to gi|32490457|dbj|BAC79152.1| [Staphylococcus intermedius], percent identity 62 in 329 aa, BLASTP E(): e-108 putative protease	Member of the U7 Peptidase family Peptidase family S49	
CHLTR00508	ADP,ATP carrier protein 2	Transporter, putative	Major facilitator superfamily MFS_1	ADP/ATP translocase	ADP,ATP carrier protein	ADP/ATP translocating protein several transmembrane helices (TMpred:8 or 9)	Major facilitator superfamily MFS_1	Major facilitator superfamily MFS_1 precursor	Putative nucleotide transport protein	Putative transporter, Major facilitator superfamily MFS_1	Putative nucleotide transport protein	Putative uncharacterized protein	Putative nucleotide transport protein	
CHLTR00509	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	CDP-alcohol phosphatidyltransferase	CDP-diacylglycerol/glycerol-3-P phosphatidyltransferase EC 2.7.8.5	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	CDP-alcohol phosphatidyltransferase	CDP-diacylglycerol/glycerol-3-phosphate 3- phosphatidyltransferase	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	
CHLTR00511	Replicative DNA Helicase	DnaB; replicative DNA helicase protein	Replicative DNA helicase	DnaB protein	replicative DNA helicase	Probable replicative dna helicase protein	Replicative DNA helicase	conserved gene replicative DNA helicase	Replicative DNA helicase	Replicative DNA helicase DnaC	identified by similarity to EGAD:21924; match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665 replicative DNA helicase	Replicative DNA helicase	replicative DNA helicase	identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665 replicative DNA helicase	Replicative DNA helicase	DNA polymerase III delta prime subunit	Replicative DNA helicase	Replicative DNA helicase	Replicative DNA helicase DnaC	Replicative DNA helicase	InterProMatches:IPR007692; Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA helicase activity (GO:0003678), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication (GO:0006260) replicative DNA helicase	replicative DNA helicase	Replicative DNA helicase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark replicative DNA helicase	COG0305 Replicative DNA helicase replicative DNA helicase	Replicative DNA helicase DnaB	Replicative DNA helicase	IPR003593: AAA ATPase; IPR007692: DnaB helicase; IPR007693: DnaB-like helicase, N-terminal;IPR007694: DnaB-like helicase, C-terminal putative replicative DNA helicase;chromosome replication; chain elongation	similar to Salmonella typhi CT18 replicative DNA helicase replicative DNA helicase	
CHLTR00512	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA	glucose inhibited division protein A	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	Highly simislar to glucose-inhibited division protein A GidA hypothetical protein	conserved gene glucose inhibited division protein A	Highly simislar to glucose-inhibited division protein A GidA hypothetical protein	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	identified by similarity to EGAD:15241; match to protein family HMM PF01134; match to protein family HMM TIGR00136 glucose inhibited division protein A	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	Putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase subunit GidA	glucose inhibited division protein	identified by similarity to SP:P17112; match to protein family HMM PF01134; match to protein family HMM TIGR00136 glucose inhibited division protein A	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	glucose inhibited division protein A	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA	tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	identified by match to protein family HMM PF01134; match to protein family HMM TIGR00136 glucose inhibited division protein A	Glucose inhibited division protein A	InterProMatches:IPR004416; cell division glucose-inhibited division protein	glucose inhibited division protein A	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark glucose inhibited division protein A	
CHLTR00513	Lipoate Protein Ligase	lipoate protein ligase A	lipoate-protein ligase A	predicted protein	Lipoate-protein ligase A	Lipoate-protein ligase A	Lipoate-protein ligase A	Biotin/lipoate A/B protein ligase family protein	jgi|Emihu1|61151|e_gw1.1.256.1	
CHLTR00514	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	similar to nucleoside diphosphate kinase hypothetical protein	conserved gene nucleoside diphosphate kinase	similar to nucleoside diphosphate kinase hypothetical protein	Nucleoside-diphosphate kinase	identified by similarity to EGAD:18023; match to protein family HMM PF00334 nucleoside diphosphate kinase	nucleoside diphosphate kinase	identified by similarity to SP:Q59636; match to protein family HMM PF00334 nucleoside diphosphate kinase	Nucleoside diphosphate kinase	nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	identified by similarity to SP:Q59636; match to protein family HMM PF00334 nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Mb2472c, ndkA, len: 136 aa. Equivalent to Rv2445c, len: 136 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 136 aa overlap). Probable ndkA (alternate gene name: ndk), nucleoside diphosphate kinase (EC 2.7.4.6), equivalent to Q9CBZ0|NDK|ML1469 from Mycobacterium leprae (136 aa), FASTA scores: opt: 762, E(): 1.5e-42, (87.4% identity in 135 aa overlap); and O85501|NDK from Mycobacterium smegmatis (139 aa), FASTA scores: opt: 714, E(): 1.9e-39, (80.7% identity in 135 aa overlap). Also highly similar to others e.g.  P50589|NDK_STRCO from Streptomyces coelicolor (137 aa), FASTA scores: opt: 535, 6.8e-28, (60.3% identity in 136 aa overlap); O29491|NDK_ARCFU|AF0767 from Archaeoglobus fulgidus (151 aa), FASTA scores: opt: 521, E(): 5.9e-27, (58.0% identity in 131 aa overlap); P31103|NDK_BACSU from Bacillus subtilis (151 aa), FASTA scores: opt: 515, E(): 1.4e-26, (56.5% identity in 131 aa overlap); etc. BELONGS TO THE NDK FAMILY. PROBABLE NUCLEOSIDE DIPHOSPHATE KINASE NDKA (NDK) (NDP KINASE) (NUCLEOSIDE-2-P KINASE)	InterProMatches:IPR001564; Molecular Function: nucleoside-diphosphate kinase activity (GO:0004550), Molecular Function: ATP binding (GO:0005524), Biological Process: GTP biosynthesis (GO:0006183), Biological Process: UTP biosynthesis (GO:0006228), Biological Process: CTP biosynthes nucleoside diphosphate kinase	nucleoside diphosphate kinase	Nucleoside diphosphate kinase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark nucleoside diphosphate kinase	Nucleoside diphosphate kinase	IPR001564: Nucleoside diphosphate kinase nucleoside diphosphate kinase	
CHLTR00515	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	holliday junction DNA helicase	conserved gene Holliday junction DNA helicase RuvA	holliday junction DNA helicase	Holliday junction ATP-dependent DNA helicase ruvA	identified by similarity to EGAD:92909; match to protein family HMM PF01330; match to protein family HMM PF02904; match to protein family HMM TIGR00084 Holliday junction DNA helicase RuvA	RuvA Holliday junction DNA helicase	holliday junction DNA helicase RuvA	identified by match to protein family HMM PF01330; match to protein family HMM PF07499 Holliday junction DNA helicase RuvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction DNA helicase, subunit A	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction DNA helicase ruvA	Holliday junction DNA helicase RuvA	identified by similarity to SP:P08576; match to protein family HMM PF00633; match to protein family HMM PF01330; match to protein family HMM TIGR00084 Holliday junction DNA helicase RuvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction DNA helicase RuvA	Holliday junction ATP-dependent DNA helicase ruvA	Mb2624c, ruvA, len: 196 aa. Equivalent to Rv2593c, len: 196 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 196 aa overlap). Probable ruvA, Holliday junction binding protein (see citations below), equivalent to P40832|RUVA_MYCLE|ML0482|B1177_C2_188 HOLLIDAY JUNCTION DNA HELICASE from Mycobacterium leprae (203 aa), FASTA scores: opt: 923, E(): 9.9e-50, (76.85% identity in 203 aa overlap). Also highly similar to others e.g. Q9L290|RUVA from Streptomyces coelicolor (201 aa) (201 aa), FASTA scores: opt: 549, E(): 8.2e-27, (47.55% identity in 204 aa overlap); Q9AE10|RUVA from Corynebacterium glutamicum (Brevibacterium flavum) (206 aa), FASTA scores: opt: 440, E(): 4e-20, (47.1% identity in 206 aa overlap); P08576|RUVA_ECOLI|B1861|Z2913|ECS2571 from Escherichia coli strains K12 and O157:H7 (203 aa), FASTA scores: opt: 312, E(): 2.8e-12, (34.85% identity in 201 aa overlap); etc. BELONGS TO THE RUVA FAMILY. PROBABLE HOLLIDAY JUNCTION DNA HELICASE RUVA	InterProMatches:IPR000085; Molecular Function: DNA helicase activity (GO:0003678), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310) Holliday junction DNA helicase	holliday junction DNA helicase RuvA	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark holliday junction binding protein, DNA helicase	RuvA helicase Holliday junction	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	
CHLTR00516	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	conserved gene crossover junction endodeoxyribonuclease RuvC	Crossover junction endodeoxyribonuclease ruvC	holliday junction resolvase RuvC	identified by match to protein family HMM PF02075; match to protein family HMM TIGR00228 crossover junction endodeoxyribonuclease RuvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	identified by similarity to SP:Q51424; match to protein family HMM PF02075; match to protein family HMM TIGR00228 crossover junction endodeoxyribonuclease RuvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease RuvC	Crossover junction endodeoxyribonuclease ruvC	Mb2625c, ruvC, len: 188 aa. Equivalent to Rv2594c, len: 188 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 188 aa overlap). Probable ruvC, Holliday junction resolvase (EC 3.1.22.4) (see citations below), equivalent to P40834|RUVC_MYCLE|ML0481|B1177_C3_226 CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE from Mycobacterium leprae (188 aa), FASTA scores: opt: 984, E(): 2.3e-55, (81.0% identity in 184 aa overlap). Also highly similar to others e.g.  Q9AE11|RUVC from Corynebacterium glutamicum (Brevibacterium flavum) (221 aa), FASTA scores: opt: 713, E(): 3.6e-38, (56.9% identity in 188 aa overlap); Q9L289|RUVC_STRCO|SCL2.10c from Streptomyces coelicolor (188 aa), FASTA scores: opt: 704, E(): 1.2e-37, (60.65% identity in 178 aa overlap); P24239|RUVC_ECOLI|B1863 from Escherichia coli strain K12 (172 aa), FASTA scores: opt: 322, E(): 1.6e-13, (38.65% identity in 163 aa overlap); etc. BELONGS TO THE RUVC FAMILY. COFACTOR: MAGNESIUM. PROBABLE CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC (HOLLIDAY JUNCTION NUCLEASE) (HOLLIDAY JUNCTION RESOLVASE)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark holliday junction resolvase; endodeoxyribonuclease	Crossover junction endodeoxyribonuclease ruvC	IPR002176: Crossover junction endodeoxyribonuclease RuvC Holliday junction nuclease	Holliday junction resolvasome, endonuclease subunit, RuvC	similar to Salmonella typhi CT18 crossover junction endodeoxyribonuclease crossover junction endodeoxyribonuclease	Similar to Chlamydia trachomatis crossover junction endodeoxyribonuclease RuvC or ct502 SWALL:RUVC_CHLTR (SWALL:O84510) (170 aa) fasta scores: E(): 9.3e-41, 69.18% id in 159 aa, and to Escherichia coli, and Escherichia coli O157:H7 crossover junction endodeoxyribonuclease RuvC SWALL:RUVC_ECOLI (SWALL:P24239) (172 aa) fasta scores: E(): 4.2e-16, 40.62% id in 160 aa putative crossover junction endodeoxyribonuclease RuvC	Crossover junction endodeoxyribonuclease ruvC	similar to BR1704, crossover junction endodeoxyribonuclease RuvC RuvC, crossover junction endodeoxyribonuclease	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	
CHLTR00517	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00518	Uncharacterized protein CT_504	hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00519	Glyceraldehyde 3-phosphate dehydrogenase	Glyceraldehyde-3-P dehydrogenase	Glyceraldehyde-3-phosphate dehydrogenase	Glyceraldehyde-3-phosphate dehydrogenase A	glyceraldehyde 3-phosphate dehydrogenase	Glyceraldehyde-3-phosphate dehydrogenase	Glyceraldehyde-3-phosphate dehydrogenase	Glyceraldehyde 3-phosphate dehydrogenase A	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark glyceraldehyde-3-phosphate dehydrogenase	IPR000173: Glyceraldehyde 3-phosphate dehydrogenase; IPR006424: Glyceraldehyde-3-phosphate dehydrogenase, type I; IPR006436: Glyceraldehyde-3-phosphate dehydrogenase, type II glyceraldehyde-3-phosphate dehydrogenase A	similar to Salmonella typhi CT18 glyceraldehyde 3-phosphate dehydrogenase A glyceraldehyde 3-phosphate dehydrogenase A	Similar to Chlamydia pneumoniae glyceraldehyde 3-phosphate dehydrogenase gap or gapa or cpn0624 or cp0123 SWALL:G3P_CHLPN (SWALL:Q9Z7T0) (335 aa) fasta scores: E(): 4.8e-108, 80.59% id in 335 aa, and to Escherichia coli, and Escherichia coli O157:H7 glyceraldehyde 3-phosphate dehydrogenase gapA or SWALL:G3P1_ECOLI (SWALL:P06977) (330 aa) fasta scores: E(): 8.3e-77, 59.33% id in 332 aa putative glyceraldehyde 3-phosphate dehydrogenase	Glyceraldehyde-3-phosphate dehydrogenase	Glyceraldehyde 3-phosphate dehydrogenase A	glyceraldehyde 3-phosphate dehydrogenase	GAPDH; Similar to: HI0001, G3P_HAEIN glyceraldehyde 3-phosphate dehydrogenase	, predicted protein, len = 216 aa, probably glyceraldehyde 3-phosphate dehydrogenase, cytosolic; predicted pI = 9.0636; good similarity to G3PC_LEIME, glyceraldehyde 3-phosphate dehydrogenase, cytosolic (EC 1.2.1.12) (330 aa, Leishmania mexicana, EMBL: X65220, CAA46323); Fasta scores: E():1.8e-69, 86.916% identity (87.324% ungapped) in 214 aa overlap, (aa 1-214 of , aa 117-329 of G3PC_LEIME) glyceraldehyde 3-phosphate dehydrogenase, cytosolic, putative	Similar to previously sequenced Bacteroides fragilis glyceraldehyde 3-phosphate dehydrogenase Gap SWALL:G3P_BACFR (SWALL:Q59199) (299 aa) fasta scores: E(): 6.5e-108, 99.66% id in 299 aa, and to Ralstonia solanacearum glyceraldehyde 3-phosphate dehydrogenase GapA or Gap or RSC2749 or RS00105 SWALL:G3P_RALSO (SWALL:P52694) (332 aa) fasta scores: E(): 1.6e-95, 79.09% id in 330 aa, and to Xanthomonas axonopodis glyceraldehyde-3-phosphate dehydrogenase GapA or XAC3352 SWALL:Q8PHA7 (EMBL:AE011981) (333 aa) fasta scores: E(): 1.6e-93, 76.97% id in 330 aa putative glyceraldehyde 3-phosphate dehydrogenase	Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase GapA protein	Glyceraldehyde-3-phosphate dehydrogenase	Glyceraldehyde-3-phosphate dehydrogenase	go_component: cytoplasm [goid 0005737]; go_component: lipid particle [goid 0005811]; go_component: cytosol [goid 0005829]; go_component: cell wall (sensu Fungi) [goid 0009277]; go_function: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity [goid 0004365]; go_process: gluconeogenesis [goid 0006094]; go_process: glycolysis [goid 0006096] glyceraldehyde 3-phosphate dehydrogenase GpdA	glyceraldehyde-3-phosphate dehydrogenase	identified by similarity to SP:P06977; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 glyceraldehyde-3-phosphate dehydrogenase, type I	glyceraldehyde 3-phosphate dehydrogenase	Glyceraldehyde-3-phosphate dehydrogenase	identical to SP:P10097: Glyceraldehyde 3- phosphate dehydrogenase, cytosolic (GAPDH). {Trypanosoma brucei brucei;}; go_component: cytosol [goid 0005829]; go_function: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity [goid 0004365]; go_process: glycolysis [goid 0006096] glyceraldehyde 3-phosphate dehydrogenase, cytosolic	
CHLTR00520	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50s ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	conserved gene 50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059 ribosomal protein L17	50S ribosomal protein L17	LSU ribosomal protein L17P	50S ribosomal protein L17	identified by similarity to SP:P02416 ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	identified by similarity to SP:P02416; match to protein family HMM PF01196; match to protein family HMM TIGR00059 ribosomal protein L17	50S ribosomal protein L17	InterProMatches:IPR000456; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein L17 (BL15)	50S ribosomal protein L17	50S ribosomal protein L17	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 50S ribosomal protein L17	
CHLTR00521	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase alpha chain	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase alpha chain	conserved gene DNA-directed RNA polymerase alpha subunit RpoA	DNA-directed RNA polymerase alpha chain	DNA-directed RNA polymerase subunit alpha	identified by similarity to EGAD:15427; match to protein family HMM PF01000; match to protein family HMM PF03118 DNA-directed RNA polymerase, alpha subunit	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase alpha chain	RNA polymerase alpha subunit	identified by similarity to SP:P00574 DNA-directed RNA polymerase, alpha subunit	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase alpha subunit	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase alpha chain	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	identified by similarity to SP:P20429; match to protein family HMM PF01000; match to protein family HMM PF03118 DNA-directed RNA polymerase, alpha subunit	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase, alpha subunit	DNA-directed RNA polymerase subunit alpha	Mb3486c, rpoA, len: 347 aa. Equivalent to Rv3457c, len: 347 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 347 aa overlap). Probable rpoA, alpha chain of RNA polymerase (EC 2.7.7.6), equivalent to Q9X798|RPOA_MYCLE|ML1957|MLCB1222.27c DNA-DIRECTED RNA POLYMERASE ALPHA from Mycobacterium leprae (347 aa), FASTA scores: opt: 2139, E(): 1.3e-123, (95.65% identity in 347 aa overlap). Also highly similar to others e.g.  P72404|RPOA_STRCO|C6G4.07 from Streptomyces coelicolor (340 aa), FASTA scores: opt: 1672, E(): 4.7e-95, (75.55% identity in 348 aa overlap); Q9X4V6|RPOA_STRGT from Streptomyces granaticolor (340 aa), FASTA scores: opt: 1671, E(): 5.4e-95, (75.55% identity in 348 aa overlap); P20429|RPOA_BACSU from Bacillus subtilis (314 aa), FASTA scores: opt: 939, E(): 3e-50, (48.9% identity in 311 aa overlap); etc. Contains (PS00017) ATP/GTP-binding site motif A (P-loop). BELONGS TO THE RNA POLYMERASE ALPHA CHAIN FAMILY. PROBABLE DNA-DIRECTED RNA POLYMERASE (ALPHA CHAIN) RPOA (TRANSCRIPTASE ALPHA CHAIN) (RNA POLYMERASE ALPHA SUBUNIT) (DNA-DIRECTED RNA NUCLEOTIDYLTRANSFERASE)	InterProMatches:IPR001700, IPR009025; Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350), Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymera RNA polymerase (alpha subunit)	
CHLTR00522	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30s ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	conserved gene 30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	identified by match to protein family HMM PF00411 ribosomal protein S11	30S ribosomal protein S11	SSU ribosomal protein S11P	30S ribosomal protein S11	identified by similarity to SP:P04969 ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	identified by similarity to SP:P04969; match to protein family HMM PF00411 ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	Mb3488c, rpsK, len: 139 aa. Equivalent to Rv3459c, len: 139 aa, from Mycobacterium tuberculosis strain H37Rv, (99.3% identity in 139 aa overlap). Probable rpsK, 30S ribosomal protein S11, equivalent to Q9X7A0|RS11_MYCLE|RPSK|ML1959|MLCB1222.29c 30S RIBOSOMAL PROTEIN S11 from Mycobacterium leprae (138 aa), FASTA scores: opt: 819, E(): 7.6e-44, (89.95% identity in 139 aa overlap); and P45812|RS11_MYCBO 30S RIBOSOMAL PROTEIN S11 from Mycobacterium bovis (139 aa), FASTA scores: opt: 867, E(): 8.4e-47, (94.25% identity in 139 aa overlap). Also highly similar to others e.g. P72403|RS11_STRCO|SC6G4.06 from Streptomyces coelicolor (134 aa), FASTA scores: opt: 729, E(): 2.6e-38, (79.85% identity in 139 aa overlap); O50633|RS11_BACHD|RPSK|BH0161 from Bacillus halodurans (129 aa), FASTA scores: opt: 618, E(): 1.7e-31, (70.3% identity in 128 aa overlap); P04969|RS11_BACSU|RPSK from Bacillus subtilis (131 aa), FASTA scores: opt: 601, E(): 2e-30, (69.0% identity in 129 aa overlap); etc. Contains ribosomal protein S11 signature (PS00054). BELONGS TO THE S11P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 30S RIBOSOMAL PROTEIN S11 RPSK	InterProMatches:IPR001971; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein S11 (BS11)	
CHLTR00523	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30s ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	conserved gene 30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	identified by match to protein family HMM PF00416 ribosomal protein S13/S18	30S ribosomal protein S13	SSU ribosomal protein S13P	30S ribosomal protein S13	identified by similarity to SP:P80377 ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	identified by match to protein family HMM PF00416 ribosomal protein S13/S18	30S ribosomal protein S13	30S ribosomal protein	30S ribosomal protein S13	Mb3489c, rpsM, len: 124 aa. Equivalent to Rv3460c, len: 124 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 124 aa overlap). Probable rpsM, 30S ribosomal protein S13, equivalent to Q9X7A1|RS13_MYCLE|RPSM|ML1960|MLCB1222.30c 30S RIBOSOMAL PROTEIN S13 from Mycobacterium leprae (124 aa), FASTA scores: opt: 762, E(): 1.5e-43, (92.75% identity in 124 aa overlap); and P45813|RS13_MYCBO|RPSM from Mycobacterium bovis (123 aa), FASTA scores: opt: 727, E(): 3e-41, (98.25% identity in 114 aa overlap). Also highly similar to others e.g. O86773|RS13_STRCO|SC6G4.05 from Streptomyces coelicolor (126 aa), FASTA scores: opt: 631, E(): 6.2e-35, (73.75% identity in 122 aa overlap); Q9RA65|RPS13 from Thermus aquaticus (subsp. thermophilus) (126 aa), FASTA scores: opt: 552, E(): 9.8e-30, (62.6% identity in 123 aa overlap); P20282|RS13_BACSU|RPSM from Bacillus subtilis (120 aa), FASTA scores: opt: 533, E(): 1.7e-28, (64245% identity in 121 aa overlap); etc.  Contains ribosomal protein S13 signature (PS00646).  BELONGS TO THE S13P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 30S RIBOSOMAL PROTEIN S13 RPSM	InterProMatches:IPR001892; Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006 ribosomal protein S13	
CHLTR00524	Preprotein translocase subunit secY	SecY protein	Preprotein translocase subunit secY	PrlA protein	Preprotein translocase subunit secY	preprotein translocase secy subunit	Preprotein translocase subunit secY	Preprotein translocase subunit secY	preprotein translocase, SecY subunit	conserved gene preprotein translocase SecY	preprotein translocase, SecY subunit	Preprotein translocase subunit secY	identified by similarity to EGAD:6542; match to protein family HMM PF00344; match to protein family HMM TIGR00967 preprotein translocase, SecY subunit	Preprotein translocase subunit secY	Protein translocase subunit secY	preprotein translocase, SecY subunit	Preprotein translocase subunit secY	preprotein translocase SecY subunit	Preprotein translocase SecY subunit	Preprotein translocase secY subunit	Preprotein translocase secY subunit	Preprotein translocase subunit SecY	Preprotein translocase subunit secY	Protein-export translocase protein	Preprotein translocase subunit secY	Mb0753, secY, len: 441 aa. Equivalent to Rv0732, len: 441 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 441 aa overlap). Probable SecY, preprotein translocase (integral membrane protein), equivalent to NP_302243.1|NC_002677 SecY subunit of preprotein translocase from Mycobacterium leprae (438 aa); AAC04389.1|AF047021 preprotein translocase subunit from Mycobacterium smegmatis (438 aa); and U77912|MBU77912_1 preprotein translocase subunit from Mycobacterium bovis (441 aa), FASTA scores: opt: 2802, E(): 0, (99.8% identity in 441 aa overlap). Also highly similar to others e.g.  P46785|SECY_STRCO PREPROTEIN TRANSLOCASE SECY SUBUNIT from Streptomyces coelicolor (437 aa); etc. Contains PS00755 and PS00756 protein secY signatures 1 and 2. BELONGS TO THE SECE/SEC61-ALPHA FAMILY. PART OF THE PROKARYOTIC PROTEIN TRANSLOCATION APPARATUS WHICH COMPRISE SECA|Rv3240c, SECD|Rv2587c, SECE|Rv0638, SECF|Rv2586c, SECG|Rv1440 AND SECY. PROBABLE PREPROTEIN TRANSLOCASE SECY	InterProMatches:IPR002208; Biological Process: protein secretion (GO:0009306), Molecular Function: protein translocase activity (GO:0015450), Cellular Component: membrane (GO:0016020) preprotein translocase subunit	preprotein translocase subunit Y	Preprotein translocase subunit secY	
CHLTR00525	50S ribosomal protein L15	50S ribosomal protein L15	50S ribosomal protein L15	50s ribosomal protein L15	50S ribosomal protein L15	50S ribosomal protein L15	50S ribosomal subunit protein L15	conserved gene 50S ribosomal protein L15	50S ribosomal subunit protein L15	50S ribosomal protein L15	identified by match to protein family HMM PF00256; match to protein family HMM PF01305; match to protein family HMM TIGR01071 ribosomal protein L15	LSU ribosomal protein L15P	50S ribosomal protein L15	identified by similarity to SP:P19946 ribosomal protein L15	50S ribosomal protein L15	50S ribosomal protein L15	50S ribosomal protein L15	50S ribosomal protein L15	50S ribosomal protein L15	50S ribosomal protein L15	identified by similarity to SP:P19946; match to protein family HMM PF01305; match to protein family HMM TIGR01071 ribosomal protein L15	50S ribosomal protein L15	InterProMatches:IPR005749; Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: protein biosynthesis (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934) ribosomal protein L15	50S ribosomal protein L15	50S ribosomal protein L15	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 50S ribosomal protein L15	COG0200 Ribosomal protein L15 50S ribosomal protein L15	50S ribosomal protein L15	
CHLTR00526	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30s ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal subunit protein S5	conserved gene 30S ribosomal protein S5	30S ribosomal subunit protein S5	30S ribosomal protein S5	identified by match to protein family HMM PF00333; match to protein family HMM PF03719; match to protein family HMM TIGR01021 ribosomal protein S5	30S ribosomal protein S5	SSU ribosomal protein S5P	30S ribosomal protein S5	identified by similarity to SP:P02356 ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	identified by similarity to SP:P21467; match to protein family HMM PF00333; match to protein family HMM PF03719; match to protein family HMM TIGR01021 ribosomal protein S5	30S ribosomal protein S5	Ribosomal protein S5	30S ribosomal protein S5	Mb0742, rpsE, len: 220 aa. Equivalent to Rv0721, len: 220 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 220 aa overlap). Probable rpsE, 30S ribosomal protein S5, equivalent to MLCB2492_21 RIBOSOMAL PROTEIN S5 from Mycobacterium leprae (217 aa). Also highly similar to others e.g. P46790|RS5_STRCO 30s ribosomal protein S5 from Streptomyces coelicolor (167 aa), FASTA scores: opt: 889, E(): 0, (82.1% identity in 162 aa overlap); etc. Note N-terminus is extented compared to other rpsE genes. Contains PS00585 Ribosomal protein S5 signature, PTS HPr component phosphorylation sites signature. BELONGS TO THE S5P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 30S RIBOSOMAL PROTEIN S5 RPSE	InterProMatches:IPR005712; Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: protein biosynthesis (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935) ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	
CHLTR00527	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal subunit protein L18	conserved gene 50S ribosomal protein L18	50S ribosomal subunit protein L18	50S ribosomal protein L18	identified by match to protein family HMM PF00861; match to protein family HMM TIGR00060 ribosomal protein L18	50S ribosomal protein L18	LSU ribosomal protein L18P	50S ribosomal protein L18	identified by similarity to SP:P46899 ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	identified by similarity to SP:P46899; match to protein family HMM PF00861; match to protein family HMM TIGR00060 ribosomal protein L18	50S ribosomal protein L18	Ribosomal protein L18	50S ribosomal protein L18	Mb0741, rplR, len: 122 aa. Equivalent to Rv0720, len: 122 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 122 aa overlap). Probable rplR, 50S ribosomal protein L18, equivalent to O32999|MLCB2492_20|RL18_MYCLE 50S RIBOSOMAL PROTEIN L18 from Mycobacterium leprae (122 aa). Also highly similar to others e.g. CAB82086.1|AL161803 50S ribosomal protein L18 from Streptomyces coelicolor (127 aa); P33102|RL18_MICLU 50s ribosomal protein L18 from Micrococcus luteus (119 aa), FASTA scores: opt: 447, E(): 8.7e-24, (60.4% identity in 111 aa overlap); etc. BELONGS TO THE L18P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 50S RIBOSOMAL PROTEIN L18 RPLR	InterProMatches:IPR004389; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein L18	50S ribosomal protein L18	
CHLTR00528	50S ribosomal protein L6	LSU ribosomal protein L6P	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50s ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal subunit protein L6	conserved gene 50S ribosomal protein L6/(L9E)	50S ribosomal subunit protein L6	50S ribosomal protein L6	identified by match to protein family HMM PF00347 ribosomal protein L6	LSU ribosomal protein L6P	50S ribosomal protein L6	identified by similarity to SP:P02391 ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	identified by similarity to SP:P02390; match to protein family HMM PF00347 ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	Mb0740, rplF, len: 179 aa. Equivalent to Rv0719, len: 179 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 179 aa overlap). Probable rplF, 50S ribosomal protein L6, equivalent to O32998|MLCB2492_19 50S RIBOSOMAL PROTEIN L6 from Mycobacterium leprae (179 aa).  Also highly similar to others e.g.  P46786|RL6_STRCO|CAB82085.1|AL161803|SCD31.42 50S ribosomal protein L6 from Streptomyces coelicolor (179 aa), FASTA scores: opt: 872, E(): 0, (70.4% identity in 179 aa overlap); etc. Contains PS00525 Ribosomal protein L6 signature 1. BELONGS TO THE L6P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 50S RIBOSOMAL PROTEIN L6 RPLF	InterProMatches:IPR002358, IPR010916; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein L6 (BL8)	
CHLTR00529	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30s ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	conserved gene 30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	identified by match to protein family HMM PF00410 ribosomal protein S8	30S ribosomal protein S8	SSU ribosomal protein S8P	30S ribosomal protein S8	identified by similarity to SP:P02361 ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	identified by similarity to SP:P12879; match to protein family HMM PF00410 ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	Mb0739, rpsH, len: 132 aa. Equivalent to Rv0718, len: 132 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 132 aa overlap). Probable rpsH, 30S ribosomal protein S8, equivalent to O32997|MLCB2492_18 30S RIBOSOMAL PROTEIN S8 from Mycobacterium leprae (132 aa).  Also highly similar to others e.g. CAB82084.1|AL161803 30S ribosomal protein S8 from Streptomyces coelicolor (132 aa); P33106|RS8_MICLU 30s ribosomal protein S8 from Micrococcus luteus (132 aa), FASTA scores: opt: 669, E(): 0, (77.3% identity in 132 aa overlap); etc. Contains PS00053 Ribosomal protein S8 signature. BELONGS TO THE S8P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 30S RIBOSOMAL PROTEIN S8 RPSH	InterProMatches:IPR000630; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein S8 (BS8)	
CHLTR00530	50S ribosomal protein L5	LSU ribosomal protein L5P	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50s ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	conserved gene 50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	identified by match to protein family HMM PF00281; match to protein family HMM PF00673 ribosomal protein L5	50S ribosomal protein L5	LSU ribosomal protein L5P	50S ribosomal protein L5	identified by similarity to SP:P12877 ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	identified by similarity to SP:P12877; match to protein family HMM PF00281; match to protein family HMM PF00673 ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	Mb0737, rplE, len: 187 aa. Equivalent to Rv0716, len: 187 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 187 aa overlap). Probable rplE, 50S ribosomal protein L5, equivalent to MLCB2492_16 50S RIBOSOMAL PROTEIN L5 from Mycobacterium leprae (187 aa).  Also highly similar to others e.g. CAB82082.1|AL161803 50S ribosomal protein L5 from Streptomyces coelicolor (185 aa); P33098|RL5_MICLU 50S RIBOSOMAL PROTEIN L5 from Micrococcus luteus (191 aa), FASTA scores: opt: 930, E(): 0, (73.8% identity in 183 aa overlap); etc. BELONGS TO THE L5P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 50S RIBOSOMAL PROTEIN L5 RPLE	
CHLTR00531	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	Similar to Chlamydia trachomatis 50S ribosomal protein l24 RplX or rl24 or ct517 SWALL:RL24_CHLTR (SWALL:P28537) (111 aa) fasta scores: E(): 3.4e-34, 84.95% id in 113 aa, and to Bacillus subtilis 50S ribosomal protein l24 RplX SWALL:RL24_BACSU (SWALL:P12876) (103 aa) fasta scores: E(): 6.4e-09, 43.15% id in 95 aa putative 50S ribosomal protein l24	50S ribosomal protein L24	Ribosomal protein L24	Ribosomal protein L24	Ribosomal protein L24	50S ribosomal protein L24	ribosomal protein L24	putative 50S ribosomal protein L24 similarity:fasta; with=UniProt:RL24_BACST; Bacillus stearothermophilus.; rplX; 50S ribosomal protein L24.; length=103; id 53.000; 100 aa overlap; query 4-101; subject 3-102 similarity:fasta; with=UniProt:RL24_AGRT5 (EMBL:AE008112); Agrobacterium tumefaciens (strain C58/ATCC 33970).; rplX; 50S ribosomal protein L24.; length=102; id 88.235; 102 aa overlap; query 1-102; subject 1-102	50S ribosomal protein L24	Ribosomal protein L24	50S ribosomal protein L24 similar to rplX (SMc01298) [Sinorhizobium meliloti] and AGR_C_3538p [Agrobacterium tumefaciens] Similar to swissprot:Q92QF9 Putative location:bacterial cytoplasm Psort-Score: 0.2650; go_component: intracellular [goid 0005622]; go_component: ribosome [goid 0005840]; go_function: structural constituent of ribosome [goid 0003735]; go_process: protein biosynthesis [goid 0006412]	ribosomal protein L24 KEGG: bha:BH0145 50S ribosomal protein L24 TIGRFAM: ribosomal protein L24 PFAM: KOW SMART: KOW (Kyrpides, Ouzounis, Woese) motif	Ribosomal protein L24	Ribosomal protein L24	ribosomal protein L24	Ribosomal protein L24	ribosomal protein L24 COG0198 Ribosomal protein L24	Ribosomal protein L24	ribosomal protein L24 identified by match to protein family HMM PF00467; match to protein family HMM TIGR01079	50S ribosomal protein L24 COG family: ribosomal protein L24 Orthologue of BL1591 PFAM_ID:Ribosomal_L24	LSU ribosomal protein L24P	LSU ribosomal protein L24	ribosomal protein L24 KEGG: mlo:mlr0306 50S ribosomal protein L24 TIGRFAM: ribosomal protein L24 PFAM: KOW SMART: KOW (Kyrpides, Ouzounis, Woese) motif	50S ribosomal subunit protein L24	Ribosomal protein L24	
CHLTR00532	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50s ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	conserved gene 50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	identified by match to protein family HMM PF00238; match to protein family HMM TIGR01067 ribosomal protein L14	50S ribosomal protein L14	LSU ribosomal protein L14P	50S ribosomal protein L14	identified by similarity to SP:P02411 ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S RIBOSOMAL PROTEIN L14	50S ribosomal protein L14	identified by similarity to SP:P02411; match to protein family HMM PF00238; match to protein family HMM TIGR01067 ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	Mb0735, rplN, len: 122 aa. Equivalent to Rv0714, len: 122 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 122 aa overlap). Probable rplN, 50S ribosomal protein L14, equivalent to O32993|MLCB2492_14|ML1849|RL14_MYCLE 50S RIBOSOMAL PROTEIN L14 from Mycobacterium leprae (122 aa). Also highly similar to others e.g. CAB82080.1|AL161803 50S ribosomal protein L14 from Streptomyces coelicolor (122 aa); P33100|RL14_MICLU 50s ribosomal protein L14 from Micrococcus luteus (122 aa), FASTA scores: opt: 674, E(): 0, (85.2% identity in 122 aa overlap); etc. Contains PS00049 Ribosomal protein L14 signature. BELONGS TO THE L14P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 50S RIBOSOMAL PROTEIN L14 RPLN	50S ribosomal protein L14	50S ribosomal protein L14	
CHLTR00533	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30s ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	conserved gene 30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	identified by match to protein family HMM PF00366 ribosomal protein S17	30S ribosomal protein S17	SSU ribosomal protein S17P	30S ribosomal protein S17	ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	identified by similarity to SP:P02373; match to protein family HMM PF00366 ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	InterProMatches:IPR000266; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein S17 (BS16)	30S ribosomal protein S17	30S ribosomal protein S17	
CHLTR00534	50S ribosomal protein L29	LSU ribosomal protein L29P	LSU ribosomal protein L29P	LSU ribosomal protein L29P	LSU ribosomal protein L29P	
CHLTR00535	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50s ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	conserved gene 50S ribosomal protein L16/(L10E)	50S ribosomal protein L16	50S ribosomal protein L16	identified by match to protein family HMM PF00252; match to protein family HMM TIGR01164 ribosomal protein L16	50S ribosomal protein L16	LSU ribosomal protein L16P	50S ribosomal protein L16	identified by similarity to SP:P02414 ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	identified by similarity to SP:P02414; match to protein family HMM PF00252; match to protein family HMM TIGR01164 ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	Mb0728, rplP, len: 138 aa. Equivalent to Rv0708, len: 138 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 138 aa overlap). Probable rplP, 50S ribosomal protein L16, equivalent to O06049|RL16_MYCBO|MBS10OPER_9 50S RIBOSOMAL PROTEIN L16 from Mycobacterium bovis BCG (138 aa); and MLCB2492_9 50S RIBOSOMAL PROTEIN L16 from Mycobacterium leprae (138 aa).  Also highly similar to others e.g. CAB82077.1|AL161803 50S ribosomal protein L16 from Streptomyces coelicolor (139 aa); P14577|RL16_BACSU 50s ribosomal protein l16 from Bacillus subtilis (144 aa), FASTA scores: opt: 600, E(): 0, (63.2% identity in 136 aa overlap); etc. Contains PS00701 Ribosomal protein L16 signature 2. BELONGS TO THE L16P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 50S RIBOSOMAL PROTEIN L16 RPLP	InterProMatches:IPR000114; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein L16	
CHLTR00536	30S ribosomal protein S3	30S ribosomal protein S3	SSU ribosomal protein S3P	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30s ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	conserved gene 30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	identified by match to protein family HMM PF00013; match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM TIGR01009 ribosomal protein S3	30S ribosomal protein S3	SSU ribosomal protein S3P	30S ribosomal protein S3	identified by similarity to SP:P02352 ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	identified by similarity to SP:P02352; match to protein family HMM PF00013; match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM TIGR01009 ribosomal protein S3	30S ribosomal protein S3	Ribosomal protein S3	30S ribosomal protein S3	Mb0727, rpsC, len: 274 aa. Equivalent to Rv0707, len: 274 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 274 aa overlap). Probable rpsC, 30S ribosomal protein S3, equivalent to O06048|RS3_MYCBO|MBS10OPER_8 30S RIBOSOMAL PROTEIN S3 from Mycobacterium bovis BCG (274 aa); and MLCB2492_8 30S RIBOSOMAL PROTEIN S3 from Mycobacterium leprae (281 aa).  Also highly similar to others e.g. CAB82076.1|AL161803 30S ribosomal protein S3 from Streptomyces coelicolor (277 aa); P21465|RS3_BACSU 30s ribosomal protein s3 (bs3) (bs2) from Bacillus subtilis (217 aa), FASTA scores: opt: 794, E(): 0, (52.8% identity in 212 aa overlap); etc. BELONGS TO THE S3P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 30S RIBOSOMAL PROTEIN S3 RPSC	
CHLTR00537	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal subunit protein L22	conserved gene 50S ribosomal protein L22	50S ribosomal subunit protein L22	50S ribosomal protein L22	identified by match to protein family HMM PF00237; match to protein family HMM TIGR01044 ribosomal protein L22	LSU ribosomal protein L22P	50S ribosomal protein L22	identified by similarity to SP:P02423 ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	identified by similarity to SP:P42060; match to protein family HMM PF00237; match to protein family HMM TIGR01044 ribosomal protein L22	50S ribosomal protein L22	InterProMatches:IPR005727; Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: protein biosynthesis (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934) ribosomal protein L22 (BL17)	50S ribosomal protein L22	50S ribosomal protein L22	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 50S ribosomal protein L22	COG0091 Ribosomal protein L22 50S ribosomal protein L22	50S ribosomal protein L22	
CHLTR00538	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30s ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal subunit protein S19	30S ribosomal subunit protein S19	30S ribosomal protein S19	identified by match to protein family HMM PF00203; match to protein family HMM TIGR01050 ribosomal protein S19	30S ribosomal protein S19	SSU ribosomal protein S19P	30S ribosomal protein S19	identified by similarity to SP:P02375 ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	identified by similarity to SP:P02375; match to protein family HMM PF00203; match to protein family HMM TIGR01050 ribosomal protein S19	30S ribosomal protein S19	Ribosomal protein S19	30S ribosomal protein S19	Mb0725, rpsS, len: 93 aa. Equivalent to Rv0705, len: 93 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 93 aa overlap). Probable rpsS, 30S ribosomal protein S19, equivalent to S36895 ribosomal protein S19 from Mycobacterium bovis (93 aa), FASTA scores: opt: 623, E(): 0, (98.9% identity in 93 aa overlap); and NP_302261.1|NC_002677 30S ribosomal protein S19 from Mycobacterium leprae (93 aa). Also highly similar to others e.g. CAB82074.1|AL161803 30S ribosomal protein S19 from Streptomyces coelicolor (93 aa); etc. Contains PS00323 Ribosomal protein S19 signature. BELONGS TO THE S19P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 30S RIBOSOMAL PROTEIN S19 RPSS	InterProMatches:IPR005732; Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: protein biosynthesis (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935) ribosomal protein S19 (BS19)	30S ribosomal protein S19	
CHLTR00539	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50s ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal subunit protein L2	conserved gene 50S ribosomal protein L2	50S ribosomal subunit protein L2	50S ribosomal protein L2	identified by match to protein family HMM PF00181; match to protein family HMM PF03947; match to protein family HMM TIGR01171 ribosomal protein L2	50S ribosomal protein L2	LSU ribosomal protein L2P	50S ribosomal protein L2	identified by similarity to SP:P02387 ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	identified by similarity to SP:Q9Z9L1; match to protein family HMM PF00181; match to protein family HMM PF03947; match to protein family HMM TIGR01171 ribosomal protein L2	50S ribosomal protein L2	Ribosomal protein L2	50S ribosomal protein L2	Mb0724, rplB, len: 280 aa. Equivalent to Rv0704, len: 280 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 280 aa overlap). Probable rplB, 50S ribosomal protein L2, equivalent to O06047|RL2_MYCBO 50S RIBOSOMAL PROTEIN L2 from Mycobacterium bovis BCG (280 aa); and MLCB2492_5M 50S RIBOSOMAL PROTEIN L2 from Mycobacterium leprae (280 aa). Also highly similar to others e.g. CAB82073.1|AL161803 50S ribosomal protein L2 from Streptomyces coelicolor (278 aa); P42919|RL2_BACSU 50s ribosomal protein l2 (bl2) from Bacillus subtilis (276 aa), FASTA scores: opt: 1179, E(): 0, (61.1% identity in 275 aa overlap); etc. Contains PS00467 Ribosomal protein L2 signature. BELONGS TO THE L2P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 50S ribosomal protein L2 RPLB	InterProMatches:IPR005880; Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: protein biosynthesis (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934), Molecular Function: transfe ribosomal protein L2 (BL2)	
CHLTR00540	50S ribosomal protein L23	COG0089 ribosomal protein L23	Ribosomal L23 protein	identified by similarity to SP:P42924; match to protein family HMM PF00276 ribosomal protein L23	COG0089, RplW, Ribosomal protein L23. pfam00276, Ribosomal_L23. 50S ribosomal protein L23	Ribosomal protein L25/L23	50S ribosomal protein L23	Ribosomal L23 protein	Ribosomal protein L23	ribosomal protein L23 COG0089 Ribosomal protein L23	50S ribosomal protein L23	Ribosomal protein L25/L23 PFAM: Ribosomal protein L25/L23 KEGG: rsp:RSP_1718 50S ribosomal protein L23	LSU ribosomal protein L23P	50S ribosomal protein L23	Ribosomal protein L23	Ribosomal protein L25/L23 PFAM: Ribosomal protein L25/L23 KEGG: rsp:RSP_1718 50S ribosomal protein L23	Ribosomal protein L23	Ribosomal protein L23	Ribosomal protein L25/L23	50S ribosomal protein L23	50S ribosomal protein L23	50S ribosomal protein L23	Ribosomal protein L25/L23	50S ribosomal protein L23	50S ribosomal protein L23	50S ribosomal protein L23	Ribosomal protein L25/L23	50S ribosomal protein L23	50S ribosomal protein L23	
CHLTR00541	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50s ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	identified by match to protein family HMM PF00573 ribosomal protein L4	50S ribosomal protein L4	L4P LSU ribosomal protein L1E	50S ribosomal protein L4	identified by similarity to SP:Q9Z9L3; match to protein family HMM PF00573 ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	Mb0722, rplD, len: 223 aa. Equivalent to Rv0702, len: 223 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 223 aa overlap). Probable rplD, 50S ribosomal protein L4, equivalent to O06045|RL4_MYCBO 50S RIBOSOMAL PROTEIN L4 from Mycobacterium bovis BCG (223 aa); O06114|RL4_MYCSM 50S RIBOSOMAL PROTEIN L4 from Mycobacterium smegmatis (215 aa); and MLCB2492_3 50S ribosomal protein L4 from Mycobacterium leprae (230 aa).  Also highly similar to others e.g. CAB82071.1|AL161803 50S ribosomal protein L4 from Streptomyces coelicolor (219 aa); P28601|RL4_BACST 50s ribosomal protein L4 from Bacillus stearothermophilus (207 aa), FASTA scores: opt: 522, E(): 3.5e-26, (42.4% identity in 198 aa overlap); etc. BELONGS TO THE L4P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 50S RIBOSOMAL PROTEIN L4 RPLD	InterProMatches:IPR002136; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein L4	50S ribosomal protein L4	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 50S ribosomal protein L4	COG0088 Ribosomal protein L4 50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	IPR002136: Ribosomal protein L4/L1e 50S ribosomal protein L4	
CHLTR00542	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50s ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal subunit protein L3	conserved gene 50S ribosomal protein L3	50S ribosomal subunit protein L3	50S ribosomal protein L3	identified by match to protein family HMM PF00297 ribosomal protein L3	50S ribosomal protein L3	LSU ribosomal protein L3P	50S ribosomal protein L3	identified by similarity to SP:P02386; match to protein family HMM PF00297 ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	Mb0721, rplC, len: 217 aa. Equivalent to Rv0701, len: 217 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 217 aa overlap). Probable rplC, 50S ribosomal protein L3, equivalent to O06044|RL3_MYCBO 50S RIBOSOMAL PROTEIN L3 from Mycobacterium bovis BCG (217 aa); and P30762|RL3_MYCLE 50S RIBOSOMAL PROTEIN L3 from Mycobacterium leprae (217 aa). Also highly similar to others e.g. CAB82070.1|AL161803 50S ribosomal protein L3 from Streptomyces coelicolor (214 aa); P52860|RL3_THETH ribosomal protein l3 from Thermus aquaticus (206 aa), FASTA scores: opt: 717, E(): 0, (55.2% identity in 210 aa overlap); etc. Contains PS00474 Ribosomal protein L3 signature. BELONGS TO THE L3P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 50S RIBOSOMAL PROTEIN L3 RPLC	InterProMatches:IPR000597; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein L3 (BL3)	50S ribosomal protein L3	
CHLTR00543	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative membrane protein	Putative membrane protein	Putative membrane protein	
CHLTR00544	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Fmt	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	similar to methionyl-tRNA formyltransferase hypothetical protein	conserved gene methionyl tRNA formyltransferase	similar to methionyl-tRNA formyltransferase hypothetical protein	Methionyl-tRNA formyltransferase	identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460 methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	methionyl-tRNA formyltransferase	identified by similarity to SP:O85732; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460 methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	identified by similarity to SP:P23882; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460 methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Mb1441, fmt, len: 312 aa. Equivalent to Rv1406, len: 312 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 312 aa overlap). Probable fmt, methionyl-tRNA formyltransferase (EC 2.1.2.9), similar to many e.g. FMT_ECOLI|P23882 Escherichia coli (314 aa), FASTA scores: opt: 616, E(): 6.7e-31, (39.3% identity in 303 aa overlap). BELONGS TO THE FMT FAMILY. PROBABLE METHIONYL-TRNA FORMYLTRANSFERASE FMT	InterProMatches:IPR005794; Molecular Function: methionyl-tRNA formyltransferase activity (GO:0004479), Biological Process: protein biosynthesis (GO:0006412) methionyl-tRNA formyltransferase Fmt	methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	
CHLTR00545	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Similar to acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase hypothetical protein	conserved gene UDP-N-acetylglucosamine acyltransferase, acyl-[acyl carrier protein]-UDP-N-acetylglucosamine-O-acyltransferase	identified by similarity to SP:P10440; match to protein family HMM PF00132; match to protein family HMM TIGR01852 acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]-UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl carrier protein]--UDP-N- acetylglucosamine O-acyltransferase	identified by similarity to SP:P10440; match to protein family HMM PF00132; match to protein family HMM TIGR01852 acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase	Acyl-(Acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark UDP-N-acetylglucosamine acyltransferase	IPR001451: Bacterial transferase hexapeptide repeat UDP-N-acetylglucosamine acetyltransferase	similar to Salmonella typhi CT18 acyl-[acyl-carrier-protein]:UDP-N- acetylglucosamine O-acyltransferase acyl-[acyl-carrier-protein]:UDP-N- acetylglucosamine O-acyltransferase	Similar to Chlamydia pneumoniae acyl-[acyl-carrier-protein]-udp-N-acetylglucosamine O-acyltransferase LpxA or cpn0650 or cp0097 SWALL:LPXA_CHLPN (SWALL:Q9Z7Q4) (279 aa) fasta scores: E(): 2e-96, 84.94% id in 279 aa, and to Escherichia coli acyl-[acyl-carrier-protein]-udp-N-acetylglucosamine O-acyltransferase LpxA SWALL:LPXA_ECOLI (SWALL:P10440) (262 aa) fasta scores: E(): 1.9e-37, 45.31% id in 256 aa putative udp-n-acetylglucosamine acyltransferase	UDP-N-acetylglucosamine acyltransferase	similar to BR1151, acyl-(acyl-carrier-protein)--udp-n-acetylglucosamine o-acyltransferase LpxA, acyl-(acyl-carrier-protein)--udp-n-acetylglucosamine o-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam ineO-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	UDP-N-acetylglucosamine acyltransferase	acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	UDP-N-acetylglucosamine acyltransferase; Similar to: HI1061, LPXA_HAEIN acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-acyl carrier protein--UDP-N-acetylglucosamine O-acyltransferase LpxA protein	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]-UDP-N-acetylglucosam ine O-acyltransferase (EC 2.3.1.129)	
CHLTR00546	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl carrier protein]dehydratase	conserved gene (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase	(3R)-hydroxymyristoyl-[acyl carrier protein]dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	identified by similarity to OMNI:NTL01BH3741; match to protein family HMM PF01377; match to protein family HMM PF03061; match to protein family HMM TIGR01750 (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase	(3R)-hydroxyacyl-[acyl carrier protein] dehydratase	(3R)-hydroxymyristol acyl carrier protein dehydrase	identified by match to protein family HMM PF03061; match to protein family HMM TIGR01750 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-ACP dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	identified by similarity to SP:P21774; match to protein family HMM PF03061; match to protein family HMM TIGR01750 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ	Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase FabZ	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ	(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark (3r)-hydroxymyristoyl ACP dehydrase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases	similar to Salmonella typhi CT18 (3R)-hydroxymyristol acyl carrier protein dehydrase (3R)-hydroxymyristol acyl carrier protein dehydrase	Similar to Chlamydia pneumoniae FabZ or cpn0651 or cp0096 SWALL:FABZ_CHLPN (SWALL:Q9Z7Q3) (153 aa) fasta scores: E(): 6.8e-47, 81.69% id in 153 aa, and to Escherichia coli, and Escherichia coli O157:H7 FabZ or SefA SWALL:FABZ_ECOLI (SWALL:P21774) (151 aa) fasta scores: E(): 1.6e-17, 42.85% id in 140 aa (3r)-hydroxymyristoyl-[acyl carrier protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	similar to BR1152, (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase FabZ, (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase	
CHLTR00547	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	conserved gene UDP-3-O-acyl-N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	identified by similarity to SP:P07652; match to protein family HMM PF03331; match to protein family HMM TIGR00325 UDP-3-0-acyl N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-acyl-N-acetylglucosamine deacetylase	identified by similarity to SP:P07652; match to protein family HMM PF03331; match to protein family HMM TIGR00325 UDP-3-0-acyl N-acetylglucosamine deacetylase	UDP-3-0-acyl N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-acyl N-acetylglucosamine deacetylase	similar to Salmonella typhi CT18 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	Similar to Chlamydia pneumoniae udp-3-o-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC or cpn0652 or cp0095 SWALL:LPXC_CHLPN (SWALL:Q9Z7Q2) (282 aa) fasta scores: E(): 2.3e-91, 78.64% id in 281 aa, and to Escherichia coli, and Escherichia coli O157:H7 udp-3-o-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC or EnvA or AsmB SWALL:LPXC_ECOLI (SWALL:P07652) (305 aa) fasta scores: E(): 1.9e-29, 35.74% id in 277 aa putative udp-3-o-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	similar to BR1424, UDP-3-0-acyl N-acetylglucosamine deacetylase LpxC, UDP-3-0-acyl N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl ] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosmine deacetylase	UDP-3-0-acyl N-acetylglucosamine deacetylase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme UDP-3-O-acyl-N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	
CHLTR00548	Apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase	Mb2285c, -, len: 502 aa. Equivalent to Rv2262c and Rv2261c, len: 360 aa and 140 aa, from Mycobacterium tuberculosis strain H37Rv, (94.7% identity in 357 aa overlap and 100.0% identity in 140 aa overlap). Conserved hypothetical protein, with function unknown but some similarity to N-terminal 70% of P23930|P77703|LNT_ECOLI|CUTE|B0657 APOLIPOPROTEIN N-ACYLTRANSFERASE (EC 2.3.1.-) from Escherichia coli strain K12 (512 aa), FASTA scores: opt: 239, E(): 1.6e-07, (30.4% identity in 359 aa overlap). Note that neighboring ORF shows similarity to N -terminal part of PCC6803 apolipoprotein N-acyltransferase from Synechocystis sp., suggesting possibility of frameshift. Sequence of clones from two sources has been checked but no error found.  Appear to be two extra bases at position 1876970 compared to CDC1551 strain. Conserved hypothetical protein, with function unknown but some similarity to C-terminal end of PCC6803 apolipoprotein N-acyltransferase from Synechocystis sp. Note that next ORF shows similarity to N-terminal part of P74055 APOLIPOPROTEIN N-ACYLTRANSFERASE from Escherichia coli (519 aa), FASTA scores: opt: 142, E(): 0.007, (29.9% identity in 117 aa overlap), suggesting possible frameshift. Sequence of clones from two sources has been checked but no error found.  REMARK-M.bovis-M.tuberculosis: In Mycobacterium tuberculosis strain H37Rv, Rv2262c and Rv2261c exist as 2 genes. In Mycobacterium bovis, a 2 bp deletion (ct-*) results in a single product which is more similar to Rv2262c. CONSERVED HYPOTHETICAL PROTEIN	Apolipoprotein N-acyltransferase	Similar to Chlamydia pneumoniae apolipoprotein N-acyltransferase Lnt or cutE or cpn0653 or cp0094 SWALL:LNT_CHLPN (SWALL:Q9Z7Q1) (541 aa) fasta scores: E(): 2.8e-131, 58.22% id in 541 aa, and to Escherichia coli apolipoprotein N-acyltransferase Lnt or CutE SWALL:LNT_ECOLI (SWALL:P23930) (512 aa) fasta scores: E(): 2.8e-05, 21.42% id in 518 aa conserved hypothetical lipoprotein	similar to BR2158, apolipoprotein N-acyltransferase CutE, apolipoprotein N-acyltransferase	Putative apolipoprotein N-acyltransferase	Putative apolipoprotein N-acyltransferase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme apolipoprotein N-acyltransferase, copper homeostasis protein	Apolipoprotein N-acyltransferase	apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase Lnt protein	Apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase	Carbon-nitrogen hydrolase:apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase	identified by similarity to SP:P23930; match to protein family HMM PF00795; match to protein family HMM TIGR00546 apolipoprotein N-acyltransferase	ortholog to Escherichia coli bnum: b0657; MultiFun: Cell structure 6.1; Metabolism 1.6.10 apolipoprotein N-acyltransferase	identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546 Apolipoprotein N-acyltransferase (ALP N-acyltransferase)	Apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase	Best Blastp Hit: gb|AAF41128.1| (AE002426) apolipoprotein N-acyltransferase, putative [Neisseria meningitidis MC58] COG0815 Apolipoprotein N-acyltransferase putative apolipoprotein N-acyltransferase	apolipoprotein N-acyltransferase	Blood group Rhesus C/E and D polypeptide:Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase:Apolipoprotein N-ac...	Apolipoprotein N-acyltransferase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 1938881; Product type e : enzyme apolipoprotein N-acyltransferase copper homeostasis protein	Apolipoprotein N-acyltransferase	apolipoprotein N-acyltransferase	
CHLTR00549	Uncharacterized acyl-CoA thioester hydrolase CT_535	Hypothetical protein SE1563	Molecular Function: catalytic activity (GO:0003824) Putative acyl-CoA thioester hydrolase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark acyl-CoA thioester hydrolase	Similar to Chlamydia pneumoniae putative acyl-coA thioester hydrolase cpn0654 or cp0093 or cpj0654 SWALL:Y654_CHLPN (SWALL:Q9Z7Q0) (155 aa) fasta scores: E(): 3.9e-58, 89.61% id in 154 aa, and to Bacillus subtilis putative acyl-coA thioester hydrolase YkhA SWALL:YKHA_BACSU (SWALL:P49851) (179 aa) fasta scores: E(): 2.2e-15, 37.01% id in 154 aa putative acyl-coA thioester hydrolase	Acyl-CoA thioester hydrolase	Protein vdlD	identified by match to protein family HMM PF03061 cytosolic long-chain acyl-CoA thioester hydrolase family protein	identified by similarity to GP:28809765; match to protein family HMM PF03061 thioesterase family protein	hypothetical protein, similar to acyl-CoA thioester hydrolase	Putative acyl-CoA thioester hydrolase	Putative acyl-CoA hydrolase	thioesterase superfamily	Thioesterase superfamily	thioesterase domain protein identified by match to protein family HMM PF03061	Acyl-CoA hydrolase COG1607	Acyl-CoA hydrolase COG1607 [I] Acyl-CoA hydrolase	acyl-CoA thioester hydrolase EC 3.1.2.-	acyl-CoA hydrolase	thioesterase superfamily	acyl-CoA thioester hydrolase	acyl coenzyme A thioesterase	acyl-CoA thioester hydrolase identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	Acyl-CoA hydrolase-like	Thioesterase superfamily protein	acyl-CoA thioester hydrolase	possible acyl-CoA thioester hydrolase	thioesterase superfamily protein PFAM: thioesterase superfamily protein KEGG: aba:Acid345_3253 thioesterase superfamily	
CHLTR00550	DNA Pol III Epsilon Chain	DNA polymerase III, alpha chain PolC-type	DnaQ protein	Probable dna polymerase III (Epsilon chain) protein	DNA polymerase III epsilon chain	Similar to DNA polymerase III, epsilon chain hypothetical protein	conserved gene DNA polymerase III, epsilon subunit	Similar to DNA polymerase III, epsilon chain hypothetical protein	DNA-directed DNA polymerase III, epsilon chain	identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01406 DNA polymerase III, epsilon subunit	DNA-directed DNA polymerase, epsilon chain	DNA polymerase III, epsilon chain	DNA polymerase III, epsilon subunit	DNA polymerase III epsilon subunit	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark DNA polymerase III epsilon chain	DNA polymerase III alpha chain	Probable DNA polymerase III epsilon subunit	DNA exonuclease X, degrades ss and ds DNA with 3'-5' polarity	DNA polymerase III epsilon subunit	similar to Salmonella typhi CT18 exodeoxyribonuclease X exodeoxyribonuclease X	Similar to Chlamydia pneumoniae DNA polymerase III epsilon chain DnaQ_2 or cpn0655 or cp0092 SWALL:Q9Z7P9 (EMBL:AE001648) (249 aa) fasta scores: E(): 2.9e-86, 87.55% id in 249 aa, and to Bacillus subtilis DNA polymerase III PolC-type or DnaF or MutI SWALL:DPO3_BACSU (SWALL:P13267) (1437 aa) fasta scores: E(): 1.4e-10, 32.7% id in 159 aa putative DNA polymerase III epsilon chain	similar to BR2071, DNA polymerase III, epsilon subunit DnaQ, DNA polymerase III, epsilon subunit	DNA polymerase III epsilon chain	DNA polymerase III epsilon chain	hypothetical protein, similar to DNA polymerase III, alpha chain PolC type	DNA polymerase III, epsilon chain	Ortholog of S. aureus MRSA252 (BX571856) SAR1985 putative exonuclease	hypothetical protein, similar to DNA polymerase III, alpha chain PolC type	Similar to sp|Q92GL1|DP3E_RICCN sp|Q9ZCJ9|DP3E_RICPR; Ortholog to ERGA_CDS_05130 DNA polymerase III, epsilon chain	
CHLTR00551	ATPase or Kinase	similar to conserved hypothetical protein hypothetical protein	conserved gene ATPase or kinase	similar to conserved hypothetical protein hypothetical protein	ATPase or kinase	identified by similarity to GB:AAK25496.1; match to protein family HMM PF02367; match to protein family HMM TIGR00150 conserved hypothetical protein TIGR00150	Uncharacterized P-loop hydrolase	putative nucleotide-binding protein	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Similar to Chlamydia pneumoniae YjeE hypothetical protein cpn0657 or cp0090 SWALL:Q9Z7P7 (EMBL:AE001648) (141 aa) fasta scores: E(): 3.2e-34, 63.12% id in 141 aa. conserved hypothetical protein	conserved hypothetical protein similar to ZP_00142507.1 hypothetical protein	Putative uncharacterized protein	ATP/GTP hydrolase	Similar to Q8Z189 Hypothetical protein yjeE from Salmonella typhi (153 aa). FASTA: opt: 517 Z-score: 623.3 E(): 7.9e-27 Smith-Waterman score: 517; 56.489 identity in 131 aa overlap Nucleotide-binding protein, yjeE	Predicted ATPase or kinase	Putative nucleotide-binding protein	possible cell division control protein 6	ATP/GTP binding protein	Conserved hypothetical protein	Code: R; COG: COG0802 conserved hypothetical protein	Evidence 4 : Homologs of previously reported genes of unknown function; Product type e : enzyme conserved protein of unknown function	Code: R; COG: COG0802 conserved hypothetical protein	Protein of unknown function UPF0079	Uncharacterized P-loop hydrolase UPF0079 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150	Protein of unknown function UPF0079	Putative uncharacterized protein	Protein of unknown function UPF0079	Putative P-loop hydrolase	Code: R; COG: COG0802; orf conserved hypothetical protein	
CHLTR00552	Uncharacterized protein CT_538	hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00553	Thioredoxin	Thioredoxin	Thioredoxin	TrxA protein	Thioredoxin	Probable thioredoxin 1 (Redox factor) protein	Thioredoxin 1	Highly similar to thioredoxin hypothetical protein	conserved gene RSc1188; probable thioredoxin 1	Highly similar to thioredoxin hypothetical protein	identified by similarity to SP:P14949; match to protein family HMM PF00085; match to protein family HMM TIGR01068 thioredoxin	Thioredoxin	Thioredoxin	thioredoxin	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 thioredoxin	Thioredoxin	thioredoxin	Thioredoxin	Thioredoxin	THIOREDOXIN	Thioredoxin family protein	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 thioredoxin	Thioredoxin	Thioredoxin	Thioredoxin	Mb3945, trxC, len: 116 aa. Equivalent to Rv3914, len: 116 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 116 aa overlap). trxC (alternate gene names: trx, trxA *), thioredoxin (EC 1.-.-.-) (see citations below), equivalent to O30974|THIO_MYCSM|TRXA THIOREDOXIN from Mycobacterium smegmatis (112 aa), FASTA scores: opt: 576, E(): 2.1e-32, (80.2% identity in 111 aa overlap); and also equivalent to C-terminal end of P46843|TRXB_MYCLE|TRXB/A|TRX|ML2703 BIFUNCTIONAL THIOREDOXIN REDUCTASE/THIOREDOXIN from Mycobacterium leprae (458 aa), FASTA scores: opt: 628, E(): E(): 2e-35, (82.9% identity in 117 aa overlap). Also highly similar to many e.g. P80579|THIO_ALIAC from Alicyclobacillus acidocaldarius (Bacillus acidocaldarius) (105 aa), FASTA scores: opt: 411, E(): 3e-21, (57.15% identity in 105 aa overlap); P00275|THI1_CORNE from Corynebacterium nephridii (105 aa), FASTA scores: opt: 394, E(): 4.3e-20, (56.7% identity in 97 aa overlap); P00274|THIO_ECOLI|TRXA|TSNC|FIPA|B3781 from Escherichia coli and Salmonella typhimurium strain K12 and LT2 respectively (108 aa), FASTA scores: opt: 364, E(): 4.7e-18, (54.45% identity in 101 aa overlap); etc. Also similar to O53162|TRXB|Rv1471|MTV007.18 THIOREDOXIN from Mycobacterium tuberculosis (123 aa), FASTA scores: E(): 2.3e-15, (41.9% identity in 93 aa overlap). Contains PS00194 Thioredoxin family active site. BELONGS TO THE THIOREDOXIN FAMILY. The product of this CDS is supposed secreted. In this cas, this protein could exert its free radical scavenging activity inside macrophages. (*) Warning: note that Rv1470|MTV007.17 correspond also to trxA. THIOREDOXIN TRXC (TRX) (MPT46)	InterProMatches:IPR005746; Molecular Function: electron transporter activity (GO:0005489), Biological Process: electron transport (GO:0006118) thioredoxin	thioredoxin	Thioredoxin 1, redox factor	
CHLTR00554	RRNA Methylase	rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2	Putative rRNA methylase	CspR	tRNA/rRNA methyltransferase	Putative trna/rrna methyltransferase protein	Similar to RNA methyltransferase	Similar to rRNA methylase hypothetical protein	conserved gene RNA methyltransferase TrmH family, group 2	Similar to rRNA methylase hypothetical protein	RRNA methyltransferase	identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185 RNA methyltransferase, TrmH family, group 2	rRNA methylase	23S rRNA methyltransferase	SpoU family probable tRNA/rRNA methyltransferase	Probable RNA methyltransferase	rRNA methyltransferase, TrmH family	TRNA/rRNA methylase	Putative rRNA methylase	RRNA Methylase	Predicted rRNA methylase	identified by match to protein family HMM PF00588 RNA methyltransferase, TrmH family	SpoU	tRNA/rRNA methyltransferase protein	PROBABLE tRNA/rRNA METHYLASE SPOU	Mb3401, spoU, len: 154 aa. Equivalent to Rv3366, len: 154 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 154 aa overlap). Probable spoU, tRNA/rRNA methylase (EC 2.1.1.-), equivalent to Q9CCU7|ML0419 PUTATIVE tRNA/rRNA METHYLTRANSFERASE from Mycobacterium leprae (158 aa), FASTA scores: opt: 861, E(): 1.2e-50, (83.75% identity in 154 aa overlap); and O07698|MLCL383.24c rRNA METHYLASE from Mycobacterium leprae (169 aa), FASTA scores: opt: 861, E(): 1.3e-50, (83.75% identity in 154 aa overlap). Also highly similar to many members of the spoU family of rRNA methylases e.g.  Q9K199|NMB0268 RNA METHYLTRANSFERASE (TRMH FAMILY) from Neisseria meningitidis (serogroup B) (154 aa), FASTA scores: opt: 534, E(): 7.6e-29, (50.0% identity in 154 aa overlap); and Q9JSM8|NMA2218 from Neisseria meningitidis (serogroup A) (154 aa), FASTA scores: opt: 526, E(): 2.6e-28, (49.35% identity in 154 aa overlap); Q9HU57|PA5127 from Pseudomonas aeruginosa (153 aa), FASTA scores: opt: 531, E(): 1.2e-28, (52.95% identity in 151 aa overlap); P33899|YIBK_ECOLI|B3606 from Escherichia coli strain K12 (157 aa), FASTA scores: opt: 511, E(): 2.6e-27, (49.35% identity in 154 aa overlap); etc. BELONGS TO THE RNA METHYLTRANSFERASE TRMH FAMILY. PROBABLE tRNA/rRNA METHYLASE SPOU (tRNA/rRNA METHYLTRANSFERASE)	InterProMatches:IPR004440; Molecular Function: RNA methyltransferase activity (GO:0008173), Biological Process: RNA modification (GO:0009451) rRNA methylase homolog	rRNA methylase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark tRNA/rRNA methyltransferase	
CHLTR00555	Peptidyl-prolyl cis-trans isomerase Mip	Peptidyl-prolyl cis-trans isomerase	macrophage infectivity potentiator	conserved gene macrophage infectivity potentiator (Mip)	macrophage infectivity potentiator	IPR000774: FKBP-type peptidyl-prolyl isomerase, N-terminal; IPR001179: Peptidylprolyl isomerase, FKBP-type FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)	similar to Salmonella typhi CT18 FKBP-type peptidyl-prolyl isomerase FKBP-type peptidyl-prolyl isomerase	Similar to Chlamydophila caviae Mip protein SWALL:Q46176 (EMBL:L39892) (255 aa) fasta scores: E(): 3e-77, 87.05% id in 255 aa, and to Chlamydia pneumoniae peptidyl-prolyl cis-trans isomerase Mip precursor or cpn0661 or cp0086 SWALL:MIP_CHLPN (SWALL:Q9Z7P3) (258 aa) fasta scores: E(): 2.6e-63, 72.58% id in 248 aa putative macrophage infectivity potentiator lipoprotein	Peptidyl-prolyl cis-trans isomerase	Putative peptidyl-prolyl isomerase	FKBP-type peptidyl-prolyl cis-trans isomerase FkpA	PPIase; rotamase; Similar to: HI0574, FKBY_HAEIN probable FKBP-type peptidyl-prolyl cis-trans isomerase	Similar to Escherichia coli, and Shigella flexneri FkbP-type 22 kDa peptidyl-prolyl cis-trans isomerase FklB or B4207 or SF4279 or s4544 SWALL:FKBB_ECOLI (SWALL:P39311) (205 aa) fasta scores: E(): 7e-30, 50.51% id in 194 aa, and to Bacteroides thetaiotaomicron FkbP-type peptidyl-prolyl cis-trans isomerase, outer membrane protein precursor BT2976 SWALL:Q8A3H8 (EMBL:AE016938) (194 aa) fasta scores: E(): 6.5e-66, 93.29% id in 194 aa, and to Porphyromonas gingivalis immunoreactive 21 kDa antigen PG10 SWALL:Q9X6S1 (EMBL:AF144077) (195 aa) fasta scores: E(): 8e-34, 52.33% id in 193 aa putative FkbP-type 22 kDa peptidyl-prolyl cis-trans isomerase	FKBP-type peptidyl-prolyl cis-trans isomerases 1 FkpA protein	FKBP-type peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase	peptidyl-prolyl cis-trans isomerase	identified by similarity to SP:P45523; match to protein family HMM PF00254; match to protein family HMM PF01346 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA	FKBP-type peptidyl-prolyl cis-trans isomerase FkpA	identified by match to protein family HMM PF00254; match to protein family HMM PF01346 peptidyl-prolyl cis-trans isomerase, FKBP-type	Best Blastp Hit: gb|AAF41921.1| (AE002507) macrophage infectivity potentiator [Neisseria meningitidis MC58] COG0545 FKBP-type peptidyl-prolyl cis-trans putative peptidyl-prolylisomerase	Code: O; COG: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)	Peptidylprolyl isomerase	rotamase; Code: O; COG: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase	FKBP-type peptidyl-prolyl isomerase-like:Peptidylprolyl isomerase, FKBP-type	peptidylprolyl isomerase, FKBP-type	FKBP-type peptidyl-prolyl cis-trans isomerase	peptidylprolyl isomerase, FKBP-type	Peptidylprolyl isomerase, FKBP-type	
CHLTR00556	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	AspS protein	AspS	aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	conserved gene aspartyl tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM PF02938; match to protein family HMM TIGR00459 aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	identified by similarity to SP:P21889; match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM PF02938; match to protein family HMM TIGR00459 aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Mb2602c, aspS, len: 611 aa. Equivalent to Rv2572c, len: 596 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 595 aa overlap). Probable aspS, aspartyl-tRNA synthetase (EC 6.1.1.12), equivalent to P36429|SYD_MYCLE|ML0501|MLCB1259.19 ASPARTYL-TRNA SYNTHETASE from Mycobacterium leprae (589 aa), FASTA scores: opt: 3534, E(): 1.8e-215, (87.85% identity in 592 aa overlap). Also highly similar to many e.g.  O67589|SYD_AQUAE|AQ_1677 from Aquifex aeolicus (603 aa), FASTA scores: opt: 1829, E(): 8.2e-108, (47.5% identity in 598 aa overlap); O32038|SYD_BACSU from Bacillus subtilis (592 aa), FASTA scores: opt: 1732, E(): 1.1e-101, (46.25% identity in 597 aa overlap); P21889|SYD_ECOLI|TLS|B1866 from Escherichia coli strain K12 (590 aa), FASTA scores: opt: 1588, E(): 1.3e-92, (47.35% identity in 581 aa overlap); etc. Contains PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1. BELONGS TO CLASS-II AMINOACYL-TRNA SYNTHETASE FAMILY.  REMARK-M.bovis-M.tuberculosis: In Mycobacterium bovis, a single base deletion (t-*) omitting a stop codon, leads to a longer protein with a different COOH end compared to its homolog in Mycobacterium tuberculosis strain H37Rv (611 aa versus 596 aa). PUTATIVE ASPARTYL-TRNA SYNTHETASE ASPS (ASPARTATE--TRNA LIGASE) (ASPRS) (ASPARTIC ACID TRANSLASE)	InterProMatches:IPR004524; Molecular Function: aspartate-tRNA ligase activity (GO:0004815), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: aspartyl-tRNA aminoacylation (GO:0006422) aspartyl-tRNA synthetase	aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	
CHLTR00557	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	histidyl-tRNA synthetase	conserved gene histidyl tRNA synthetase	histidyl-tRNA synthetase	Histidyl-tRNA synthetase	identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442 histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	histidyl-tRNA synthetase	Histidyl-tRNA synthetase	histidine-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	identified by similarity to SP:P04804; match to protein family HMM PF00587; match to protein family HMM TIGR00442 histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Mb2611c, hisS, len: 423 aa. Equivalent to Rv2580c, len: 423 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 423 aa overlap). Probable hisS, histidyl-tRNA synthetase (EC 6.1.1.21), equivalent to P46696|SYH_MYCLE|HISS|ML0494|MLCB1259.12|B1177_C3_248 HISTIDYL-TRNA SYNTHETASE from Mycobacterium leprae (427 aa), FASTA scores: opt: 2380, E(): 2.1e-131, (85.85% identity in 417 aa overlap). Also highly similar to many e.g. Q9KXP2|HISS from Streptomyces coelicolor (425 aa), FASTA scores: opt: 1542, E(): 1.4e-82, (56.0% identity in 418 aa overlap); O32422|SYH_STAAU|HISS from Staphylococcus aureus (420 aa), FASTA scores: opt: 1135, E(): 7.4e-59, (44.9% identity in 412 aa overlap); P04804|SYH_ECOLI|HISS|B2514 from Escherichia coli strain K12 (423 aa), FASTA scores: opt: 1099, E(): 9.4e-57, (43.9% identity in 417 aa overlap); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO CLASS-II AMINOACYL-TRNA SYNTHETASE FAMILY. PUTATIVE HISTIDYL-TRNA SYNTHETASE HISS (HISTIDINE--TRNA LIGASE) (HISRS) (HISTIDINE--TRANSLASE)	InterProMatches:IPR004516; Molecular Function: histidine-tRNA ligase activity (GO:0004821), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: histidyl-tRNA aminoacylation (GO:0006427) histidyl-tRNA synthetase	histidyl-tRNA synthetase	Histidyl-tRNA synthetase	COG0124 Histidyl-tRNA synthetase histidyl-tRNA synthetase	

CHLTR00558	Probable hexose phosphate transport protein	Similar to hexose phosphate transport protein hypothetical protein	conserved gene hexosephosphate transport	Similar to hexose phosphate transport protein hypothetical protein	multidrug-efflux transporter	Similar to Chlamydia trachomatis probable hexose phosphate transport protein ct544 SWALL:UHPT_CHLTR (SWALL:O84548) (456 aa) fasta scores: E(): 1.8e-162, 83.85% id in 452 aa, and to Bacillus subtilis glycerol-3-phosphate transporter GlpT SWALL:GLPT_BACSU (SWALL:P37948) (444 aa) fasta scores: E(): 3.9e-60, 41.11% id in 450 aa putative hexose phosphate transport protein	MFS family hexose phosphate uptake and regulatory protein	Regulatory protein uhpC	identified by match to protein family HMM PF07690 major facilitator superfamily transporter	COG2271 Sugar phosphate permease	Code: G; COG: COG2271 regulator of uhpT	Code: G; COG: COG2271 regulator of uhpT	solute carrier family 37 (glucose-6-phosphate transporter), member 4 [Source:HGNC Symbol;Acc:4061]	Code: G; COG: COG2271 regulator of uhpT	hexosphosphate transport	Regulatory protein UhpC	Major facilitator superfamily MFS_1	Nitrate transporter	Putative regulatory protein	Regulatory protein UhpC	transcript_id=ENSFCAT00000001153	transcript_id=ENSEEUT00000014701	major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1 KEGG: bur:Bcep18194_B2718 major facilitator superfamily (MFS_1) transporter	Major facilitator superfamily MFS_1	Regulatory protein	transcript_id=ENSMLUT00000004765	regulatory protein UhpC identified by match to protein family HMM PF07690; match to protein family HMM TIGR00881	major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1 KEGG: rpd:RPD_4395 major facilitator superfamily MFS_1	sugar phosphate permease	
CHLTR00559	DNA polymerase III subunit alpha	DnaE1; DNA polymerase III (Alpha chain) protein	DNA polymerase III subunit alpha	DnaE protein	DNA polymerase III alpha chain 2	Probable dna polymerase III (Alpha chain) protein	DNA polymerase III alpha subunit	DNA polymerase III, alpha chain	conserved gene DNA polymerase III, alpha subunit	DNA polymerase III, alpha chain	DNA-directed DNA polymerase III, alpha chain	DNA polymerase III subunit alpha	Contains: Ssp dnaE intein DNA polymerase III alpha subunit	identified by similarity to SP:P10443 DNA polymerase III, alpha subunit	DNA-directed DNA polymerase III, alpha subunit	DNA polymerase III subunit alpha	DNA polymerase III alpha chain	DNA polymerase III alpha subunit	identified by similarity to SP:P10443; match to protein family HMM PF02231; match to protein family HMM PF02811; match to protein family HMM TIGR00594; match to protein family HMM TIGR01612 DNA polymerase III, alpha subunit	DnaE1	DNA polymerase III alpha subunit protein	DNA polymerase III subunit alpha	Mb1574, dnaE1, len: 1184 aa. Equivalent to Rv1547, len: 1184 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 1184 aa overlap). Probable dnaE1, DNA polymerase III, alpha chain (EC 2.7.7.7), similar to e.g. DP3A_ECOLI|P10443 dna polymerase III, alpha chain (1160 aa), FASTA scores: opt: 1789, E(): 0, (36.5% identity in 1193 aa overlap). Also similar to M.  tuberculosis, DnaE2|Rv3370c. Probable DNA polymerase III (alpha chain) dnaE1	InterProMatches:IPR004805; Molecular Function: alpha DNA polymerase activity (GO:0003889), Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA replication (GO:0006260), Molecular Function: 3'-5'-exonuclease activity (GO:0008408) DNA polymerase III (alpha subunit)	DNA polymerase III alpha subunit DnaE	DNA polymerase III, alpha chain	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark DNA polymerase III alpha chain	DNA polymerase III alpha-chain	DNA polymerase III, alpha subunit	
CHLTR00560	Predicted OMP	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00561	Putative uncharacterized protein	TPR repeats containing protein	conserved hypothetical protein	tetratricopeptide repeat family protein	Tetratricopeptide TPR_2 repeat protein precursor	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00562	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00563	Sigma regulatory factor-histidine kinase	Similar to Synechocystis sp. hypothetical protein SLR1861 SWALL:P73611 (EMBL:D90908) (143 aa) fasta scores: E(): 5.5e-07, 31.53% id in 130 aa, and to Chlamydia trachomatis sigma regulatory factor-histidine kinase RsbW or CT549 SWALL:O84553 (EMBL:AE001325) (146 aa) fasta scores: E(): 1.9e-06, 35% id in 140 aa putative anti sigma factor	regulator of sigma subunit-histidine kinase	Putative anti-sigma regulatory factor, serine/threonine protein kinase	sigma regulatory factor-histidine kinase	putative anti-sigma regulatory factor (serine/threonine protein kinase)	anti-sigma regulatory factor Ser/Thr protein kinase	putative anti-sigma regulatory factor, serine/threonine protein kinase PFAM: ATP-binding region, ATPase domain protein domain protein KEGG: sat:SYN_02357 anti-sigma regulatory factor	RsbW	Putative anti-sigma regulatory factor, serine/threonine protein kinase	Putative uncharacterized protein	Putative anti-sigma regulatory factor, serine/threonine protein kinase	Sigma regulatory factor-histidine kinase	Sigma regulatory factor-histidine kinase	Putative anti-sigma regulatory factor, serine/threonine protein kinase precursor	Putative anti-sigma regulatory factor, serine/threonine protein kinase	Putative anti-sigma regulatory factor, serine/threonine protein kinase	Putative anti-sigma regulatory factor, serine/threonine protein kinase	Putative anti-sigma regulatory factor, serine/threonine protein kinase	putative anti-sigma regulatory factor, serine/threonine protein kinase KEGG: sat:SYN_02357 anti-sigma regulatory factor	Sigma regulatory factor-histidine kinase	Putative anti-sigma regulatory factor, serine/threonine protein kinase	Sensor histidine kinase	
CHLTR00564	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00565	D-Ala-D-Ala Carboxypeptidase	InterProMatches:IPR001967; required for spore cortex synthesis,Molecular Function: serine carboxypeptidase activity (GO:0004185), Biological Process: proteolysis and peptidolysis (GO:0006508) penicilin binding protein (putative D-alanyl-D-alanine carboxypeptidase)	IPR001967: Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a	D-alanyl-D-alanine carboxypeptidase	similar to Salmonella typhi CT18 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor) D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor)	Similar to Chlamydia pneumoniae D-ala-d-ala carboxypeptidase DacF or cpn0672 or cp0075 SWALL:Q9Z7N2 (EMBL:AE001649) (436 aa) fasta scores: E(): 7.5e-106, 61.37% id in 435 aa, and to Bacillus subtilis penicillin-binding protein DacF precursor SWALL:DACF_BACSU (SWALL:P38422) (389 aa) fasta scores: E(): 9.7e-12, 29.23% id in 366 aa putative D-alanyl-d-alanine carboxypeptidase	Penicillin-binding protein	Serine-type D-Ala-D-Ala carboxypeptidase	D-alanyl-D-alanine carboxypeptidase; penicillin- binding protein 6a	putative penicillin-binding protein	D-alanyl-D-alanine carboxypeptidase	identified by similarity to SP:P04287; match to protein family HMM PF00768; match to protein family HMM PF07943 D-alanyl-D-alanine carboxypeptidase	D-alanyl-D-alanine carboxypeptidase	D-alanyl-D-alanine carboxypeptidase	identified by match to protein family HMM PF00768 penicillin-binding protein 7	Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1	Penicillin-binding protein DacF precursor	identified by similarity to SP:P38422; match to protein family HMM PF00768; match to protein family HMM PF07943 D-alanyl-D-alanine carboxypeptidase	Serine-type D-Ala-D-Ala carboxypeptidase	Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1	Penicillin-binding protein dacF precursor	penicillin-binding protein 5 EC 3.4.16.4	probable D-alanyl-D-alanine carboxypeptidase protein similar to Atu2321 [Agrobacterium tumefaciens str.  C58] and SMc00068 [Sinorhizobium meliloti] Similar to swissprot:Q8UD07 Putative location:bacterial cytoplasm Psort-Score: 0.1212; go_function: carboxypeptidase activity [goid 0004180]; go_function: serine carboxypeptidase activity [goid 0004185]; go_process: proteolysis and peptidolysis [goid 0006508]	D-alanyl-D-alanine carboxypeptidase family identified by similarity to SP:P38422; match to protein family HMM PF00768; match to protein family HMM PF07943	Serine-type D-Ala-D-Ala carboxypeptidase precursor	Serine-type D-Ala-D-Ala carboxypeptidase	Serine-type D-Ala-D-Ala carboxypeptidase precursor	D-alanyl-D-alanine carboxypeptidase	Serine-type D-Ala-D-Ala carboxypeptidase PFAM: beta-lactamase; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein KEGG: pol:Bpro_0250 serine-type D-Ala-D-Ala carboxypeptidase	
CHLTR00566	Putative uncharacterized protein	Putative exported protein precursor	Putative exported protein precursor	
CHLTR00567	RNA Methyltransferase	Probable sun-like protein	identified by similarity to OMNI:NTL01PH01412; match to protein family HMM PF01189 NOL1/NOP2/sun family protein	Similar to many including: Chlamydophila caviae nol1/nop2/sun family protein cca00065 SWALL:Q824S4 (EMBL:AE016994) (371 aa) fasta scores: E(): 3.1e-126, 85.67% id in 370 aa and to Plasmodium yoelii yoelii RNA methyltransferase, putative py03774 SWALL:Q7RI56 (EMBL:AABL01001110) (376 aa) fasta scores: E(): 1.2e-26, 36.38% id in 382 aa. Note this CDS carries multiple frameshift mutations and lacks an appropriate translational start codon pseudo conserved hypothetical protein (pseudogene)	Putative uncharacterized protein gbs0305	identified by match to PFAM protein family HMM PF01029 sun protein	Sun; eukaryotic nucleolar NOL1/Nop2p Fmu	identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563 sun protein	Fmu, rRNA SAM-dependent methyltransferase	tRNA/rRNA methyltransferase EC 2.1.1.-	tRNA and rRNA cytosine-C5-methylases	NOL1/NOP2/sun family protein, putative	putative RNA methylase, NOL1/NOP2/sun family TIGRFAM: putative RNA methylase, NOL1/NOP2/sun family PFAM: Fmu (Sun) domain protein KEGG: hal:VNG0499G Cna	methyltransferase, RsmB/NOP family identified by similarity to SP:P36929; match to protein family HMM PF01189	16S rRNA m(5)C 967 methyltransferase	RRNA methyltransferase RsmB, putative	predicted protein	Putative NOL1/NOP2/sun family protein	tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family	NOL1/NOP2/sun family protein	Sun protein	Putative methyltransferase	Putative methyltransferase	Ribosomal RNA small subunit methyltransferase B	Ribosomal RNA small subunit methyltransferase B	Fmu (Sun) domain protein	NOL1/NOP2/sun family protein	SAM-dependent tRNA/rRNA cytosine-C5 methylase	RNA methylase, NOL1/NOP2/sun family	
CHLTR00567	RNA Methyltransferase	Probable sun-like protein	identified by similarity to OMNI:NTL01PH01412; match to protein family HMM PF01189 NOL1/NOP2/sun family protein	Similar to many including: Chlamydophila caviae nol1/nop2/sun family protein cca00065 SWALL:Q824S4 (EMBL:AE016994) (371 aa) fasta scores: E(): 3.1e-126, 85.67% id in 370 aa and to Plasmodium yoelii yoelii RNA methyltransferase, putative py03774 SWALL:Q7RI56 (EMBL:AABL01001110) (376 aa) fasta scores: E(): 1.2e-26, 36.38% id in 382 aa. Note this CDS carries multiple frameshift mutations and lacks an appropriate translational start codon pseudo conserved hypothetical protein (pseudogene)	Putative uncharacterized protein gbs0305	identified by match to PFAM protein family HMM PF01029 sun protein	Sun; eukaryotic nucleolar NOL1/Nop2p Fmu	identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563 sun protein	Fmu, rRNA SAM-dependent methyltransferase	tRNA/rRNA methyltransferase EC 2.1.1.-	tRNA and rRNA cytosine-C5-methylases	NOL1/NOP2/sun family protein, putative	putative RNA methylase, NOL1/NOP2/sun family TIGRFAM: putative RNA methylase, NOL1/NOP2/sun family PFAM: Fmu (Sun) domain protein KEGG: hal:VNG0499G Cna	methyltransferase, RsmB/NOP family identified by similarity to SP:P36929; match to protein family HMM PF01189	16S rRNA m(5)C 967 methyltransferase	RRNA methyltransferase RsmB, putative	predicted protein	Putative NOL1/NOP2/sun family protein	tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family	NOL1/NOP2/sun family protein	Sun protein	Putative methyltransferase	Putative methyltransferase	Ribosomal RNA small subunit methyltransferase B	Ribosomal RNA small subunit methyltransferase B	Fmu (Sun) domain protein	NOL1/NOP2/sun family protein	SAM-dependent tRNA/rRNA cytosine-C5 methylase	RNA methylase, NOL1/NOP2/sun family	
CHLTR00568	Amino Acid (Branched) Transport	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 branched-chain amino acid transport system II carrier protein	Branched-chain amino acid transport system carrier protein	Branched-chain amino acid transport system carrier protein	InterProMatches:IPR004685; Biological Process: branched-chain aliphatic amino acid transport (GO:0015803), Cellular Component: integral to membrane (GO:0016021) branched-chain amino acid transporter	branched-chain amino acid transport system carrier protein BraB	best blastp match gb|AAK33381.1| (AE006497) putative branched-chain amino acid transport protein [Streptococcus pyogenes M1 GAS] putative branched-chain amino acid transport protein	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter branched chain amino acid transporter	branched chain amino acid transport system II carrier protein	Branched-chain amino acid permeases BrnQ protein	branched-chain amino acid carrier protein	branched-chain amino acid transport system carrier protein	branched-chain amino acid transporter identified by match to protein family HMM PF05525	Branched-chain amino acid transport system carrier protein	Branched-chain amino acid transport system carrier protein	Branched-chain amino acid transport system II carrier protein	branched-chain amino acid transport system II carrier protein identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796	hypothetical protein similarity to COG1114 Branched-chain amino acid permeases(Evalue: 2E-97)	branched-chain amino acid transport system II carrier protein identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796	Branched-chain amino acid transport system II carrier protein	Branched-chain amino acid carrier protein	Branched-chain amino acid permease	Branched-chain amino acid transport system II carrier protein	branched-chain amino acid transport system II carrier protein PFAM: branched-chain amino acid transport system II carrier protein KEGG: sfr:Sfri_0662 branched-chain amino acid transport system II carrier protein	branched-chain amino acid transport system carrier protein	branched-chain amino acid transport system II carrier protein PFAM: branched-chain amino acid transport system II carrier protein KEGG: son:SO0949 branched-chain amino acid transport system II carrier protein BrnQ	Branched chain amino acid transporter	branched chain amino acid transporter	branched chain amino acid transporter Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter	
CHLTR00569	SWI/SNF family helicase	swi/snf family helicase 2	SWF/SNF family helicase	Putative helicase	Putative helicase	Putative helicase	
CHLTR00570	Putative uncharacterized protein	conserved hypothetical protein	hypothetical membrane associated protein	Putative membrane protein	Putative membrane protein	Putative membrane protein	
CHLTR00571	Dihydrolipoyl dehydrogenase	Dihydrolipoyl dehydrogenase	InterProMatches:IPR006258; branched-chain fatty acid biosynthesis,Molecular Function: dihydrolipoyl dehydrogenase activity (GO:0004148), Biological Process: glycolysis (GO:0006096) branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase)	dihydrolipoamide dehydrogenase branched-chain alpha-keto acid dehydrogenase E3 component	Similar to Bacillus stearothermophilus dihydrolipoamide dehydrogenase PdhD SWALL:DLD1_BACST (SWALL:P11959) (470 aa) fasta scores: E(): 4e-63, 41.57% id in 457 aa, and to Chlamydia pneumoniae dihydrolipoamide dehydrogenase LpdA SWALL:DLDH_CHLPN (SWALL:Q9Z773) (461 aa) fasta scores: E(): 1.5e-136, 77.99% id in 459 aa dihydrolipoamide dehydrogenase	dihydrolipoamide dehydrogenase	Ortholog of S. aureus MRSA252 (BX571856) SAR1596 putative dihydrolipoamide dehydrogenase	putative dihydrolipoamide dehydrogenase	Dihydrolipoamide dehydrogenase	Dihydrolipoyl dehydrogenase	identified by similarity to SP:P54533; match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350 2-oxoisovalerate dehydrogenase, E3 component, lipoamide dehydrogenase	putative dihydrolipoamide dehydrogenase	dihydrolipoamide dehydrogenase identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350	Dihydrolipoamide dehydrogenase	dihydrolipoamide dehydrogenase identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350	2-oxoisovalerate dehydrogenase, E3 component, lipoamide dehydrogenase identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350	dihydrolipoamide dehydrogenase EC 1.8.1.4	Hypothetical protein	Dihydrolipoamide dehydrogenase	hypothetical protein similarity to COG1249 Dihydrolipoamide dehydrogenase/glutathione oxidoreductase and related enzymes(Evalue: 2E-96)	dihydrolipoamide dehydrogenase identified by similarity to GB:AAA21748.1; match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350	dihydrolipoamide dehydrogenase	putative dihydrolipoamide dehydrogenase COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	pyruvate dehydrogenase complex E3, dihydrolipoamide dehydrogenase	alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350	dihydrolipoamide dehydrogenase	Dihydrolipoamide dehydrogenase	putative carbon monoxide dehydrogenase/acetyl-CoA synthase complex, dihydrolipoyl dehydrogenase subunit	Putative dihydrolipoamide dehydrogenase	
CHLTR00572	Lipoyl synthase	Lipoyl synthase	Lipoyl synthase	Lipoyl synthase	Lipoyl synthase	Lipoyl synthase	identified by similarity to EGAD:21017; match to protein family HMM PF02546; match to protein family HMM PF04055; match to protein family HMM TIGR00510 lipoate synthase	lipoic acid synthetase	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00510 lipoic acid synthetase	Lipoyl synthase	Lipoyl synthase	Lipoyl synthase	Lipoyl synthase 1	Lipoyl synthase	Lipoic acid synthetase	Lipoyl synthase	Mb2241, lipA, len: 311 aa. Equivalent to Rv2218, len: 311 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 311 aa overlap). Probable lipA, lipoic acid synthetase, similar to e.g. SW:LIPA_HAEIN P44463 (42 .6% identity in 291 aa overlap). Equivalent to Z98741|MLCB2 2_12 Mycobacterium leprae cosmid B22; (314 aa). FASTA score : opt: 1836, E(): 0; 86.8% identity in 310 aa overlap Probable lipoate biosynthesis protein A LipA	InterProMatches:IPR003698; Biological Process: lipoate biosynthesis (GO:0009107), Molecular Function: lipoate synthase activity (GO:0016992) lipoic acid synthetase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark lipoic acid synthetase	Lipoic acid synthase	IPR003698: Lipoate synthase; IPR006638: Elongator protein 3/MiaB/NifB; IPR007197: Radical SAM lipoate synthase, an iron-sulfur enzyme	Lipoate synthase	similar to Salmonella typhi CT18 lipoic acid synthetase lipoic acid synthetase	Similar to Escherichia coli lipoic acid synthetase LipA or Lip SWALL:LIPA_ECOLI (SWALL:P25845) (321 aa) fasta scores: E(): 5e-41, 40.97% id in 288 aa, and to Chlamydia muridarum lipoic acid synthetase LipA SWALL:LIPA_CHLMU (SWALL:Q9PJI2) (308 aa) fasta scores: E(): 4.5e-89, 75.65% id in 304 aa, and to Saccharomyces cerevisiae lipoic acid synthetase, mitochondrial precursor Lip5 SWALL:LIP5_YEAST (SWALL:P32875) (414 aa) fasta scores: E(): 2.3e-45, 43.05% id in 295 aa lipoic acid synthetase	similar to BR1124, lipoic acid synthetase LipA, lipoic acid synthetase	Lipoyl synthase	Lipoyl synthase	lipoic acid synthetase	Lipoyl synthase	
CHLTR00573	Yop proteins translocation lipoprotein J	Similar to Chlamydia pneumoniae Yop translocation protein J SWALL:Q9Z778 (EMBL:AE001663) (335 aa) fasta scores: E(): 1.4e-96, 80.53% id in 334 aa, and to Burkholderia pseudomallei SctJ SWALL:Q93KZ5 (EMBL:AF074878) (274 aa) fasta scores: E(): 3.2e-13, 35.13% id in 185 aa putative type III export protein	identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544 type III secretion component, putative	type III secretion flagellar biosynthesis M-ring protein	type III secretion apparatus lipoprotein, YscJ/HrcJ family identified by similarity to GB:AAK81934.1; match to protein family HMM PF01514	SctJ type III secretion cytoplasmic membrane protein	pscJ type III export protein	Putative uncharacterized protein	Type III secretion system protein, membrane component precursor	Type III secretion system protein, membrane component precursor	Putative uncharacterized protein	Type III secretion apparatus lipoprotein, YscJ/HrcJ family	Type III secretion system protein	Type III secretion apparatus lipoprotein, YscJ/HrcJ family	Type III export protein PscJ	Type iii secretion component protein sctj	Type III needle complex inner membrane lipoprotein	Type III secretion system protein, membrane component	
CHLTR00574	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	

CHLTR00575	Yop proteins translocation protein L	Type III secretion component protein SctL	flagellar assembly protein	Similar to Chlamydia pneumoniae yop translocation l yscl or cpn0826 or cp1045 SWALL:Q9Z780 (EMBL:AE001663) (233 aa) fasta scores: E(): 4.1e-54, 74.05% id in 212 aa, and to Yersinia enterocolitica yop proteins translocation protein l yscL SWALL:YSCL_YEREN (SWALL:Q01253) (223 aa) fasta scores: E(): 2.4e-09, 25.12% id in 199 aa putative type III export protein	Yop proteins translocation protein L	Flagellar assembly protein FliH	Flagellar biosynthesis protein	flagellar assembly protein fliH, putative	type III secretion flagellar biosynthesis translocase	type III secretion protein	Flagellar biosynthesis/type III secretory pathway protein-like protein	type III secretion protein, YopL family putative type III secretion protein	flagellar assembly protein	Endoflagellar biosynthesis/type III secretory pathway protein cytoplasmic protein	Endoflagellar biosynthesis/type III secretory pathway protein cytoplasmic protein	flagellar assembly protein FliH, putative	FliH family protein	SctL type III secretion cytoplasmic protein	Flagellar assembly protein FliH	Yop proteins translocation protein L	AscL protein	type III export protein PscL	flagellar assembly protein FliH, putative	Type III secretion apparatus protein, HrpE/YscL family	Flagellar biosynthesis/type III secretory pathway protein-like protein	Type III secretion protein	Flagellar assembly protein	Flagellar biosynthesis/type III secretory pathway protein-like protein	Flagellar assembly protein FliH	
CHLTR00576	Yop proteins translocation protein R	Type III secretion component protein SctR	identified by similarity to SP:P35528; similarity to GB:BAC51081.1; match to protein family HMM PF00813; match to protein family HMM TIGR01103 flagellar biosynthetic protein FliP	Type III secretion system EscR protein	identified by similarity to SP:P35528; match to protein family HMM PF00813; match to protein family HMM TIGR01103 flagellar biosynthetic protein FliP	Type III secretion apparatus protein, YscR/HrcR family	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark hrpD2	similar to YscR of the secretion system of Yersinia; IPR005837: Flagellar transport protein FliP; IPR005838: Type III secretion system inner membrane P protein Secretion system apparatus SsaR	similar to Salmonella typhi Ty2 putative type III secretion protein putative type III secretion protein	Similar to Chlamydia pneumoniae Yop translocation protein R SWALL:Q9Z781 (EMBL:AE001663) (306 aa) fasta scores: E(): 8.8e-90, 81.1% id in 307 aa, and to Ralstonia solanacearum hypersensitivity response secretion protein HrcR or HrpT SWALL:HRCR_RALSO (SWALL:Q52488) (217 aa) fasta scores: E(): 3e-27, 38.63% id in 220 aa putative type III export protein	Flagellar basal body protein FliP	HrcR protein	FLAGELLAR BIOSYNTHESIS PROTEIN	Yop proteins translocation protein R	identified by similarity to SP:P33133; match to protein family HMM PF00813 flagellar biosynthesis protein FliP	flagellar biosynthetic protein FliP	Virulence protein yscR	Flagellar biosynthetic protein FliP	flagellar biosynthetic protein P	Yop virulence translocation protein R	Flagellar transport protein FliP	flagellar transport protein FliP	putative type III secretion apparatus	type III secretion flagellar biosynthesis inner membrane protein	Yop virulence translocation R precursor	HrcR protein	flagellar biosynthetic protein FliP	flagellar biosynthetic protein FliP TIGRFAM: flagellar biosynthetic protein FliP: (6.8e-89) PFAM: type III secretion system inner membrane P protein: (1.2e-82) KEGG: sil:SPO0196 flagellar biosynthetic protein FliP, ev=2e-94, 72% identity	Flagellar biosynthetic protein FliP precursor	
CHLTR00577	Yop proteins translocation protein S	Type III secretion component protein SctS	Flagellar biosynthetic protein	flagellar biosynthetic protein FliQ	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark HrcS	Similar to Chlamydia pneumoniae YopS translocation protein SWALL:Q9Z782 (EMBL:AE001663) (95 aa) fasta scores: E(): 1.4e-31, 90.52% id in 95 aa, and to Yersinia pestis Yop protein translocation protein S SWALL:YSCS_YERPE (SWALL:P40298) (88 aa) fasta scores: E(): 1.5e-09, 43.05% id in 72 aa, and to Escherichia coli EscS SWALL:Q9AJ28 (EMBL:AF200363) (89 aa) fasta scores: E(): 6.4e-09, 41.33% id in 75 aa putative type III export protein	HrcS protein	flagellar biosynthetic protein FliQ	Flagellar biosynthesis protein FliQ	HrcS protein	Type III secretion protein HrpO	identified by similarity to SP:P35535; match to protein family HMM PF01313; match to protein family HMM TIGR01402 flagellar biosynthetic protein FliQ	Flagellar biosynthesis protein FliQ	flagellar biosynthetic protein FliQ	Type III secretory pathway, component EscS COG4794	type III secretion flagellar biosynthesis inner membrane protein	Type III secretion protein HrpO precursor	Flagellar biosynthesis protein FliQ	HrcS protein	type III secretion system protein BsaX identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403	Flagellar biosynthetic protein FliQ	Flagellar biosynthetic protein FliQ	probable translocation protein in type III secretion	HrcS protein HrcS protein (HrpD3 protein) identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	flagellar biosynthetic protein FliQ	Flagellar biosynthetic protein FliQ	flagellar biosynthetic protein FliQ	Export protein FliQ, family 3	Flagellar biosynthetic protein FliQ precursor	
CHLTR00578	Yop proteins translocation protein T	Hrp conserved hrct transmembrane protein	Type III secretion component protein SctT	Type III secretion apparatus protein SpaR/YscT/HrcT	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark HrpB8	similar to YscT of the secretion system of Yersinia; IPR002010: Bacterial export protein, family 1 Secretion system apparatus SsaT	Similar to Chlamydia pneumoniae YopT tranlocation protein SWALL:Q9Z783 (EMBL:AE001663) (289 aa) fasta scores: E(): 3.6e-99, 82% id in 289 aa, and to Salmonella typhimurium secretion system apparatus protein SsaT or stm1421 SWALL:SSAT_SALTY (SWALL:P96068) (259 aa) fasta scores: E(): 2.3e-13, 27.27% id in 242 aa putative type III export protein	similar to BRA1131, flagellar biosynthesis protein FliR, hypothetical hypothetical FliR, flagellar biosynthesis protein	HrcT protein	Yop proteins translocation protein T	Flagellar biosynthetic protein FliR	Bacterial export protein, family 1:Flagellar biosynthesis protein FliR	Pfam: Bacterial export proteins, family 1 (export proteins that do not possess signal peptides through the membrane) Citation: Caulobacter FliQ and FliR membrane proteins, required for flagellar biogenesis and cell division, belong to a family of virulen Flagellar biosynthesis pathway, component FliR	type III secretion flagellar biosynthesis inner membrane protein	Type III secretion protein SpaR/YscT	HrcT protein	type III secretion system translocation protein similar to Y4yN (HrcT) homolog [Rhizobium sp.  NGR234] and hrcT (mlr6345) [Mesorhizobium loti]; similar to entrez-protein:P55722 Putative location:bacterial inner membrane Psort-Score: 0.5203; go_component: membrane [goid 0016020]; go_process: protein targeting [goid 0006605]	type III secretion protein	Type III secretion component protein SctT	HrcT protein HrcT protein (HrpB8 protein) identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	type III secretion protein SpaR/YscT/HrcT TIGRFAM: type III secretion protein SpaR/YscT/HrcT PFAM: type III secretion system inner membrane R protein KEGG: xom:XOO_0083 HrcT protein	Type III secretion apparatus protein	type III secretion protein SpaR/YscT/HrcT TIGRFAM: type III secretion protein SpaR/YscT/HrcT PFAM: type III secretion system inner membrane R protein KEGG: bcn:Bcen_3521 type III secretion protein SpaR/YscT	type III secretion inner membrane protein SctT, putative identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401	SctT type III secretion inner membrane protein	Putative type III secretion protein	AscT protein	translocation protein in type III secretion	type III secretion system inner membrane R protein	
CHLTR00579	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative membrane protein	Putative membrane protein	Putative membrane protein	
CHLTR00580	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative exported protein precursor	Putative exported protein precursor	
CHLTR00581	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00582	Putative uncharacterized protein	conserved hypothetical protein	hypothetical membrane associated protein	Putative membrane protein precursor	Putative membrane protein precursor	Putative membrane protein	
CHLTR00583	Putative outer membrane protein CT_569	outer membrane protein	general secretion pathway protein G	General secretion pathway protein G	General secretion pathway protein G	General secretion pathway protein G	
CHLTR00584	Gen. Secretion Protein F	Probable general secretory pathway f transmembrane protein	pilin biogenesis protein type IV pilus assembly protein PilC	identified by similarity to GB:AAP87276.1; match to protein family HMM PF00482 general secretory pathway protein F	Cytochrome biogenesis protein	Pilus assembly protein PilC	Similar to Chlamydia pneumoniae general secretion protein F GspF SWALL:Q9Z789 (EMBL:AE001662) (391 aa) fasta scores: E(): 2.2e-107, 71.42% id in 392 aa, and to Pseudomonas aeruginosa general secretion pathway protein F xcps or pa3102 SWALL:GSPF_PSEAE (SWALL:Q00513) (405 aa) fasta scores: E(): 6.4e-28, 27.38% id in 409 aa general secretion pathway protein F	Putative general secretion pathway protein F	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter general secretion pathway protein F	Type II secretion pathway protein XcpS	Similar to Q888U1 Type IV pilus biogenesis protein PilC from Pseudomonas syringae (pv. tomato) (405 aa).  FASTA: opt: 1017 Z-score: 1153.2 E(): 2.4e-56 Smith-Waterman score: 1017; 39.055identity in 402 aa overlap. Termed pilF in N. gonorrhoeae. Type IV pili polytopic inner membrane protein	Type IV fimbrial assembly protein, pilC Type II Secretion System PilC	pilin biogenesis protein	identified by similarity to SP:P22609; match to protein family HMM PF00482 type IV pilus assembly protein PilC	Code: NU; COG: COG1459 putative type II secretion protein	General secretion pathway protein F	type IV pilus assembly protein PilC identified by match to protein family HMM PF00482	type II secretion system protein	general secretion pathway protein F	type IV pilus assembly protein PilC	Bacterial type II secretion system protein F domain identified by match to protein family HMM PF00482	type IV pilus assembly protein PilC identified by match to protein family HMM PF00482	General secretion pathway protein F	type II secretion system protein	Code: NU; COG: COG1459 putative type II secretion protein	type II secretion system protein PFAM: type II secretion system protein: (2.3e-14) KEGG: dra:DR1863 pilin biogenesis protein, ev=0.0, 82% identity	general secretion pathway protein F	General secretion pathway protein F	type II secretion system protein	
CHLTR00585	Gen. Secretion Protein E	Bacterial type II secretion system protein E	Probable general secretion pathway protein e	type II protein secretion ATPase LspE	conserved gene type II secretory pathway protein E	type II protein secretion ATPase LspE	Probable type II secretion system protein	General secretory pathway protein E	identified by similarity to GP:4139237; match to protein family HMM PF00437 general secretory pathway protein E	Pilus assembly secretion ATP-binding protein	Similar to Pseudomonas aeruginosa general secretion pathway protein E XcpR SWALL:GSPE_PSEAE (SWALL:Q00512) (502 aa) fasta scores: E(): 6.1e-69, 47.63% id in 487 aa, and to Chlamydia pneumoniae genral secretion protein E GspE SWALL:Q9Z790 (EMBL:AE001662) (496 aa) fasta scores: E(): 2.3e-133, 75.86% id in 493 aa general secretion pathway protein E	Putative uncharacterized protein gspE	Type II secretion system protein E	General secretion pathway protein E	General secretion pathway protein E	general secretion pathway protein E	Similar to: HI0298, HOFB_HAEIN putative type IV pilin secretion protein	Predicted ATPases involved in pili biogenesis, PilB similarity GspE protein	Type II secretion pathway protein XcpR	Type II secretory pathway, ATPase PulE-like	general secretory pathway protein E	type II secretion system protein E	identified by similarity to SP:P37093; match to protein family HMM PF00437; match to protein family HMM TIGR02533 general secretion pathway protein E	protein transport protein HofB homolog, pili/fimbriae biogenesis protein	identified by match to protein family HMM PF00437; match to protein family HMM TIGR02533 general secretion pathway protein E	type II secretion system protein E	type II secretion system protein E:General secretory system II, protein E, N-terminal	identified by similarity to SP:P22608; match to protein family HMM PF00437; match to protein family HMM PF05157 type IV pilus assembly protein PilB	type II secretion system protein E	
CHLTR00586	Gen. Secretion Protein D	general secretion pathway protein D	general secretion pathway protein D	General secretion pathway protein D precursor	KEGG: pat:Patl_3236 type II and III secretion system protein Type II secretory pathway component PulD-like protein	General secretion pathway protein D precursor	General secretion pathway protein D precursor	General secretion pathway protein D	General secretion pathway protein D	
CHLTR00587	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00588	Aminopeptidase P	Uncharacterized peptidase SAV1708	PepP	xaa-pro aminopeptidase	Xaa-Pro aminopeptidase	identified by similarity to GP:3372642; match to protein family HMM PF00557 proline dipeptidase	XAA-PRO aminopeptidase	Xaa-Pro dipeptidase	identified by match to protein family HMM PF00557 metallopeptidase, family M24	aminopeptidase P; XAA-pro aminopeptidase	Xaa-Pro dipeptidase	Xaa-Pro dipeptidase	PROBABLE CYTOPLASMIC PEPTIDASE PEPQ	Mb2564c, pepQ, len: 372 aa. Equivalent to Rv2535c, len: 372 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 372 aa overlap). Probable pepQ, cytoplasmic peptidase (EC 3.4.-.-), equivalent to Q9CCS1|PEPQ|ML0521 PUTATIVE CYTOPLASMIC PEPTIDASE from Mycobacterium leprae (376 aa), FASTA scores: opt: 1954, E(): 1.1e-105, (82.7% identity in 376 aa overlap). Also similar to other peptidases e.g. P54518|YQHT_BACSU PUTATIVE PEPTIDASE (BELONGS TO PEPTIDASE FAMILY M24B) from Bacillus subtilis (353 aa), FASTA scores: opt: 808, E(): 1.6e-39, (39.65% identity in 368 aa overlap); Q9KXQ8|SC9C5.16c PUTATIVE PEPTIDASE from Streptomyces coelicolor (368 aa), FASTA scores: opt: 803, E(): 3.2e-39, (43.15% identity in 380 aa overlap); Q9K950|BH2800 XAA-PRO DIPEPTIDASE from Bacillus halodurans (355 aa), FASTA scores: opt: 801, E(): 4.1e-39, (39.45% identity in 365 aa overlap); etc. Note that second part of protein is similar to second part of MTCY49.29c|Rv2089c|MT2150|MTCY49.29c PROBABLE DIPEPTIDASE (EC 3.4.13.-; BELONGS TO PEPTIDASE FAMILY M24B) from Mycobacterium tuberculosis (375 aa) (33.9% identity in 354 aa overlap) BLAST RESULTS: Score: 142 bits (359), E: 4e-33, Identities: 86/224 (38%), Positives: 119/224 (52%), Gaps: 4/224 (1%). COULD BE BELONG TO PEPTIDASE FAMILY M24B. PUTATIVE CYTOPLASMIC PEPTIDASE PEPQ	xaa-Pro aminopeptidase; Biological Process: proteolysis and peptidolysis (GO:0006508), Molecular Function: metalloexopeptidase activity (GO:0008235) Peptidase M24B, X-Pro dipeptidase YqhT	Xaa-Pro dipeptidase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark proline dipeptidase	COG0006 Xaa-Pro aminopeptidase X-Pro dipeptidase	Proline dipeptidase	Aminopeptidase P	Similar to Chlamydia pneumoniae aminopeptidase P PepP SWALL:Q9Z793 (EMBL:AE001662) (355 aa) fasta scores: E(): 2.3e-91, 62.64% id in 356 aa, and to Pyrococcus furiosus Xaa-Pro dipeptidase PepQ SWALL:PEPQ_PYRFU (SWALL:P81535) (348 aa) fasta scores: E(): 8.1e-35, 32.09% id in 349 aa putative peptidase	Putative uncharacterized protein	Xaa-Pro dipeptidase homolog	Ortholog of S. aureus MRSA252 (BX571856) SAR1786 putative metallopeptidase	Xaa-Pro dipeptidase homolog	Putative aminopeptidase P; XAA-pro aminopeptidase	best blastp match gb|AAK34547.1| (AE006609) putative aminopeptidase P; XAA-pro aminopeptidase [Streptococcus pyogenes M1 GAS] putative aminopeptidase	prolinedipeptidase X-prodipeptidase	identified by similarity to SP:P46545; match to protein family HMM PF00557 proline dipeptidase	
CHLTR00589	DNA mismatch repair protein mutL	DNA mismatch repair protein mutL	identified by match to protein family HMM PF01119; match to protein family HMM PF02518; match to protein family HMM TIGR00585 DNA mismatch repair protein MutL	DNA mismatch repair protein	DNA mismatch repair protein mutL	DNA mismatch repair protein	InterProMatches:IPR002099; DNA mismatch repair, Biological Process: mismatch repair (GO:0006298) MutL	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark DNA mismatch repair protein MutL	MutL DNA mismatch repair protein	DNA mismatch repair protein mutL	Similar to Escherichia coli DNA mismatch repair protein MutL SWALL:MUTL_ECOLI (SWALL:P23367) (615 aa) fasta scores: E(): 6e-33, 29.36% id in 538 aa, and to Chlamydia pneumoniae DNA mismatch repair protein MutL SWALL:MUTL_CHLPN (SWALL:Q9Z794) (580 aa) fasta scores: E(): 1.2e-136, 59.01% id in 588 aa DNA mismatch repair protein MutL	similar to BRA0218, DNA mismatch repair protein MutL MutL, DNA mismatch repair protein	DNA mismatch repair protein mutL	DNA mismatch repair protein	identified by similarity to SP:P49850; match to protein family HMM PF01119; match to protein family HMM PF02518; match to protein family HMM TIGR00585 DNA mismatch repair protein MutL	predicted ATPase; COG0323 DNA mismatch repair enzyme	Similar to Bacillus subtilis DNA mismatch repair protein MutL or BSU17050 SWALL:MUTL_BACSU (SWALL:P49850) (627 aa) fasta scores: E(): 1.5e-57, 31.65% id in 635 aa, and to Escherichia coli DNA mismatch repair protein MutL or B4170 SWALL:MUTL_ECOLI (SWALL:P23367) (615 aa) fasta scores: E(): 4.3e-38, 28.41% id in 623 aa putative DNA mismatch repair protein	similar to DNA mismatch repair protein	DNA mismatch repair protein	DNA mismatch repair protein MutL	identified by similarity to SP:P14160; match to protein family HMM PF01119; match to protein family HMM PF02518; match to protein family HMM TIGR00585 DNA mismatch repair protein, MutL/HexB family	DNA mismatch repair protein	Best Blastp Hit: pir||C81860 DNA mismatch repair protein NMA1655 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380297|emb|CAB84883.1| (AL162756) DNA mismatch repair protein [Neisseria meningitidis] COG0323 DNA mismatch repair enzyme (predicted; MutL putative DNA mismatch repair protein	DNA mismatch repair protein	DNA mismatch repair protein, MutL	DNA mismatch repair protein:ATP-binding region, ATPase-like	DNA mismatch repair protein	DNA mismatch repair protein	DNA mismatch repair protein MutL	
CHLTR00590	Low Calcium Response Protein H	Similar to Chlamydia muridarum type III secretion chaperone SycD SWALL:Q9PJG4 (EMBL:AE002353) (246 aa) fasta scores: E(): 1e-66, 77.82% id in 230 aa, and to Yersinia pseudotuberculosis low calcium response locus protein H LcrH SWALL:LCRH_YERPS (SWALL:P23995) (168 aa) fasta scores: E(): 6.3e-07, 26.31% id in 152 aa putative regulatory protein	putative type III secretion chaperone	type III secretion chaperone low calcium response protein H	regulatory protein PcrH	type III secretion chaperone/low calcium response protein H	regulatory protein PcrH	Type III secretion chaperone	Type III secretion chaperone	Chaperone protein	Yopb/d chaperone sycd	Type III secretion chaperone	EscB	
CHLTR00591	Putative uncharacterized protein	conserved hypothetical protein	hypothetical cytosolic protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00592	Putative uncharacterized protein	wall surface anchor family protein	hypothetical protein	Putative type III secretion system membrane protein	Putative type III secretion system membrane protein	Putative type III secretion system membrane protein	
CHLTR00593	Protein CT_579	wall surface anchor family protein	hypothetical protein	Putative type III secretion system protein	Putative type III secretion system protein	Putative type III secretion system protein	
CHLTR00594	Putative uncharacterized protein	Putative uncharacterized protein	Cellular Component: membrane (GO:0016020) conserved membrane protein YoaV	putative permease	similar to Salmonella typhi CT18 putative membrane protein putative membrane protein	Similar to Chlamydia muridarum hypothetical protein Tc0869 SWALL:Q9PJG0 (EMBL:AE002353) (318 aa) fasta scores: E(): 5.1e-79, 67.55% id in 302 aa, and to Bacillus subtilis hypothetical transport protein YoaV SWALL:YOAV_BACSU (SWALL:O34416) (292 aa) fasta scores: E(): 4.1e-09, 21.83% id in 284 aa conserved exported membrane protein	putative SMR family transporter, possible pecM homologue	transporter, drug/metabolite exporter family	Similar to: HI0976.1, Y97X_HAEIN conserved hypothetical protein	Permeases of the drug/metabolite transporter (DMT) superfamily RhaT protein	Membrane protein, putative	Putative permease	Integral membrane protein DUF6	identified by match to protein family HMM PF00892 transporter, putative	Protein of unknown function DUF6, transmembrane	Protein of unknown function DUF6	Putative SMR family transporter, possible pecM homologue precursor	identified by match to protein family HMM PF00892 putative membrane protein	Code: GER; COG: COG0697 putative transmembrane subunit	putative SMR family transporter, possible PecM	protein of unknown function DUF6, transmembrane	Protein of unknown function DUF6, transmembrane	protein of unknown function DUF6, transmembrane	Code: GER; COG: COG0697 putative transmembrane subunit	protein of unknown function DUF6, transmembrane PFAM: protein of unknown function DUF6, transmembrane: (6.2e-12) KEGG: dra:DR0135 hypothetical protein, ev=1e-119, 76% identity	cationic amino acid transporter	putative membrane protein identified by match to protein family HMM PF00892	Hypothetical transport protein YedA	protein of unknown function DUF6, transmembrane PFAM: protein of unknown function DUF6, transmembrane KEGG: rso:RSc2507 probable transmembrane protein	
CHLTR00595	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl tRNA synthetase	conserved gene threonyl tRNA synthase	Threonyl tRNA synthetase	identified by similarity to SP:P00955; match to protein family HMM PF00587; match to protein family HMM PF02824; match to protein family HMM PF03129; match to protein family HMM TIGR00418 threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	identified by similarity to SP:P18256; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00418 threonyl-tRNA synthetase	Threonyl-tRNA synthetase	InterProMatches:IPR002320; Molecular Function: threonine-tRNA ligase activity (GO:0004829), Molecular Function: ATP binding (GO:0005524), Biological Process: threonyl-tRNA aminoacylation (GO:0006435) threonyl-tRNA synthetase	threonyl-tRNA synthetase	Threonyl-tRNA synthetase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark threonyl-tRNA synthetase	IPR002320: Threonyl-tRNA synthetase, class IIa; IPR006195: Aminoacyl-transfer RNA synthetase, class II threonine tRNA synthetase	Threonyl-tRNA synthetase	similar to Salmonella typhi CT18 threonyl-tRNA synthetase threonyl-tRNA synthetase	Similar to Bacillus subtilis threonyl-tRNA synthetase 2 ThrZ or ThrS2 SWALL:SYT2_BACSU (SWALL:P18256) (638 aa) fasta scores: E(): 7.6e-115, 47.5% id in 602 aa, and to Chlamydia trachomatis threonyl-tRNA synthetase ThrS or ct581 SWALL:SYT_CHLTR (SWALL:O84585) (635 aa) fasta scores: E(): 2.6e-213, 77.95% id in 635 aa threonyl-tRNA synthetase	Threonyl-tRNA synthetase	similar to BR1071, threonyl-tRNA synthetase ThrS, threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Putative threonyl-tRNA synthetase	
CHLTR00596	ParA family protein CT_582	InterProMatches:IPR000707; centromere-like function with Spo0J involved in forespore chromosome partitioning negative regulation of sporulation initiation (antagonized by Spo0J) chromosome partitioning protein transcriptional regulator	chromosome partitioning protein	Similar to Chlamydia pneumoniae ParA family protein SWALL:PARA_CHLPN (SWALL:Q9Z7A1) (255 aa) fasta scores: E(): 1.1e-93, 90.98% id in 255 aa, and to Chlamydia trachomatis virulence plasmid ParA family protein pgp5-d SWALL:GP5D_CHLTR (SWALL:P10559) (264 aa) fasta scores: E(): 3.9e-28, 37% id in 254 aa putative chromosome partitioning protein	Chromosome partitioning protein para	identified by similarity to SP:P37522; match to protein family HMM PF00991 sporulation initiation inhibitor protein SOJ	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type ph : phenotype chromosome partitioning protein	COG1192 Soj ATPases involved in chromosome partitioning similar to NP_699034.1 chromosome partitioning protein	Uncharacterized protein PP_0002	putative partitioning or sporulation protein	identified by similarity to SP:P37522; match to protein family HMM PF01656 sporulation initiation inhibitor protein soj	Chromosome partitioning ATPase	Partition protein, Par-like	Chromosome segregation ATPase	Cobyrinic acid a,c-diamide synthase	Cobyrinic acid a,c-diamide synthase	predicted ATPase involved in chromosome partitioning; COG1192, pfam00991	ATPase, ParA family	ATPase Probably involved in chromosome partitioning	Chromosome partitioning protein parA COG0455 [D] ATPases involved in chromosome partitioning	Cobyrinic acid a,c-diamide synthase PFAM: Cobyrinic acid a,c-diamide synthase: (5.4e-52) KEGG: dra:DR0013 chromosome partitioning ATPase Soj, ev=1e-120, 87% identity	chromosome partitioning ATPase similar to MinD or Sporulation initiation inhibitor soj	ATPase, ParA family	plasmid partitioning protein RepAf1 Similar to Y4cK [Rhizobium sp. NGR234] Putative location:bacterial inner membrane Psort-Score: 0.1277	Cobyrinic acid a,c-diamide synthase PFAM: Cobyrinic acid a,c-diamide synthase KEGG: sth:STH3333 ParA, ParA family ATPase	parA domain protein (chromosome partitioning protein) (ATPase)	sporulation initiation inhibitor protein soj identified by match to protein family HMM PF01656	Chromosome partitioning protein ParA	Chromosome partitioning protein parA	
CHLTR00597	Virulence plasmid protein pGP6-D-related protein	Chlamydial plasmid protein pGP6-D-related protein	virulence plasmid protein pGP6-D-related protein	Virulence plasmid protein pGP6-D-related protein	Virulence plasmid protein pGP6-D-related protein	Virulence plasmid protein pGP6-D-related protein	
CHLTR00598	Protein CT_584	hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00599	Tryptophanyl-tRNA synthetase	Tryptophan--tRNA ligase	Tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase protein	COG0180 Tryptophanyl-tRNA synthetase trp-tRNA synthetase	Tryptophanyl-tRNA synthetase	IPR001412: Aminoacyl-tRNA synthetase, class I; IPR002306: Tryptophanyl-tRNA synthetase, class Ib putative tryptophanyl-tRNA synthetase	trpS-like protein	Similar to Chlamydia pneumoniae tryptophanyl-tRNA synthetase TrpS SWALL:SYW_CHLPN (SWALL:Q9Z7A4) (344 aa) fasta scores: E(): 3.7e-114, 84.84% id in 343 aa, and to Salmonella typhimurium, and Salmonella typhi tryptophanyl-tRNA synthetase TrpS SWALL:SYW_SALTY (SWALL:Q8XGS1) (334 aa) fasta scores: E(): 2.6e-25, 31.37% id in 341 aa putative tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	identified by match to PFAM protein family HMM PF00579 tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	best blastp match gb|AAK34835.1| (AE006637) putative tryptophanyl-tRNA synthetase [Streptococcus pyogenes M1 GAS] putative tryptophanyl-tRNA synthetase	tryptophanyl-tRNA synthetase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Similar to Escherichia coli tryptophanyl-tRNA synthetase TrpS or B3384 SWALL:SYW_ECOLI (SWALL:P00954) (334 aa) fasta scores: E(): 3.4e-23, 31.21% id in 346 aa, and to Lactococcus lactis tryptophanyl-tRNA synthetase TrpS or LL0066 SWALL:SYW_LACLA (SWALL:Q9CJD1) (341 aa) fasta scores: E(): 1.8e-80, 62.68% id in 343 aa putative tryptophanyl-tRNA synthetase	tryptophanyl-tRNA synthetase	Putative tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase, class Ib	identified by match to protein family HMM PF00579; match to protein family HMM TIGR00233 tryptophanyl-tRNA synthetase	tryptophanyl-tRNA synthetase	identified by match to protein family HMM PF00579; match to protein family HMM TIGR00233 tryptophanyl-tRNA synthetase	Tryptophanyl--tRNA synthetase	Tryptophanyl-tRNA synthetase, class Ib	
CHLTR00600	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	excinuclease ABC subunit B	UvrABC system protein B	UvrABC system protein B	excinuclease ABC subunit B	conserved gene excinuclease ABC subunit B	excinuclease ABC subunit B	UvrABC system protein B	identified by similarity to EGAD:24137; match to protein family HMM PF00271; match to protein family HMM PF02151; match to protein family HMM TIGR00631 excinuclease ABC, B subunit	UvrABC system protein B	Excinuclease ABC subunit B	excinuclease ABC subunit B	UvrABC system protein B	UvrABC system protein B	excinuclease ABC subunit B	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	identified by similarity to SP:P37954; match to protein family HMM PF00271; match to protein family HMM PF02151; match to protein family HMM TIGR00631 excinuclease ABC, B subunit	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	Mb1659, uvrB, len: 698 aa. Equivalent to Rv1633, len: 698 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 698 aa overlap). uvrB, Excinuclease abc subunit B, has ATP/GTP-binding site motif A (P-loop; PS00017) near N-terminus. FASTA best: UVRB_MICLU|P10125 from Micrococcus luteus (709 aa), opt: 3268, E(): 0, (71.3% identity in 704 aa overlap). Also similar to M.  tuberculosis Rv2973c (recG); and Rv1020 (mfd). BELONGS TO THE UVRB FAMILY. Excinuclease ABC subunit B uvrB	InterProMatches:IPR004807; excision of ultraviolet light-induced pyrimidine dimers in DNA,Cellular Component: cytoplasm (GO:0005737), Biological Process: nucleotide-excision repair (GO:0006289), Cellular Component: excinuclease ABC complex (GO:0009380), Molecular Function: excinuclease ABC activity (GO:0009381) excinuclease ABC (subunit B)	UvrABC system protein B excinuclease ABC subunit B UvrB	
CHLTR00601	Enolase	Enolase	enolase	Enolase	Enolase	Enolase	enolase	Enolase	Enolase	enolase	conserved gene enolase	enolase	Enolase 1	identified by similarity to SP:O69174; match to protein family HMM PF00113; match to protein family HMM PF03952; match to protein family HMM TIGR01060 enolase	Enolase	Enolase	enolase	identified by match to protein family HMM PF00113; match to protein family HMM PF03952; match to protein family HMM TIGR01060 enolase	2-phosphoglycerate dehydratase, enolase	Enolase	Enolase	Enolase	Enolase	identified by match to protein family HMM PF00113; match to protein family HMM PF03952; match to protein family HMM TIGR01060 enolase	Enolase	Enolase	Enolase	Mb1051, eno, len: 429 aa. Equivalent to Rv1023, len: 429 aa, from Mycobacterium tuberculosis strain H37Rv, (99.8% identity in 429 aa overlap). Probable eno, enolase (EC 4.2.1.11), highly similar to others e.g.  ENO_ECOLI|P08324 enolase from Escherichia coli (431 aa), FASTA scores: opt: 1487, E(): 0, (55.5% identity in 422 aa overlap); etc. MAGNESIUM IS REQUIRED FOR CATALYSIS AND FOR STABILIZING THE DIMER. BELONGS TO THE ENOLASE FAMILY. PROBABLE ENOLASE ENO	InterProMatches:IPR000941; Cellular Component: phosphopyruvate hydratase complex (GO:0000015), Molecular Function: phosphopyruvate hydratase activity (GO:0004634), Biological Process: glycolysis (GO:0006096) enolase	
CHLTR00602	Sigma regulatory family protein-PP2C phosphatase	sigma regulatory RsbW antagonist EC 3.1.3.16	sigma regulatory family protein-PP2C phosphatase	Sigma regulatory family protein-PP2C phosphatase	Sigma regulatory family protein-PP2C phosphatase	Sigma regulatory family protein-PP2C phosphatase	
CHLTR00603	Putative uncharacterized protein	regulator of sigma subunit	hypothetical protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00604	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00605	Succinate Dehydrogenase	identified by similarity to SP:P08066; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM TIGR00384 succinate dehydrogenase, iron-sulfur protein	Fumarate reductase, subunit B	Succinate dehydrogenase iron-sulfur protein subunit	Fumarate reductase iron-sulfur subunit	InterProMatches:IPR004489; Biological Process: tricarboxylic acid cycle (GO:0006099), Biological Process: electron transport (GO:0006118), Molecular Function: oxidoreductase activity (GO:0016491) succinate dehydrogenase (iron-sulfur protein)	succinate dehydrogenase iron-sulfur protein	Similar to Bacillus subtilis succinate dehydrogenase iron-sulfur protein SdhB SWALL:DHSB_BACSU (SWALL:P08066) (252 aa) fasta scores: E(): 1.7e-42, 44.98% id in 249 aa, and to Chlamydia pneumoniae succinate dehydrogenase SdhB or cp1082 SWALL:Q9JRX8 (EMBL:AE002264) (258 aa) fasta scores: E(): 8.4e-88, 83.65% id in 257 aa succinate dehydrogenase iron-sulfur protein	succinate dehydrogenase iron-sulfur protein subunit	Fumarate reductase iron-sulfur protein	Ortholog of S. aureus MRSA252 (BX571856) SAR1122 putative succinate dehydrogenase iron-sulfur protein	succinate dehydrogenase iron-sulfur protein subunit	Similar to: HI0834, FRDB_HAEIN fumarate reductase iron-sulfur protein	succinate dehydrogenase (Iron-sulfur subunit) oxidoreductase protein	succinate dehydrogenase iron-sulfur protein	succinate dehydrogenase iron-sulfur protein subunit	Succinate dehydrogenase/fumarate reductase iron-sulfur protein	Similar to Bacillus subtilis succinate dehydrogenase iron-sulfur protein SdhB SW:DHSB_BACSU (P08066) (252 aa) fasta scores: E(): 3.9e-81, 77.510% id in 249 aa, and to Bacillus halodurans succinate dehydrogenase iron-sulfur protein BH3091 TR:Q9K8B5 (EMBL:AP001517) (251 aa) fasta scores: E(): 9.5e-77, 74.089% id in 247 aa. CDS contains extra amino acids at the N-terminus in comparison to the B. subtilis and B.  halodurans orthologues putative succinate dehydrogenase iron-sulfur protein	identified by similarity to SP:P08066; match to protein family HMM PF00037; match to protein family HMM TIGR00384 succinate dehydrogenase, iron-sulfur protein	similar to gi|27467760|ref|NP_764397.1| [Staphylococcus epidermidis ATCC 12228], percent identity 91 in 257 aa, BLASTP E(): e-139 succinate dehydrogenase iron-sulfur protein subunit	Citation: Cole,S.T., Grundstroem,T., Jaurin,B., Robinson,J.J., Weiner,J.H., (1982) Eur. J. Biochem.  126:211-216 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit	succinate dehydrogenase, iron-sulfur protein identified by match to protein family HMM PF00037; match to protein family HMM TIGR00384	succinate dehydrogenase iron-sulfur protein	Succinate dehydrogenase subunit B	subunit of succinate dehydrogenase EC 1.3.99.1	succinate dehydrogenase and fumarate reductase iron-sulfur protein	Succinate dehydrogenase and fumarate reductase iron-sulfur protein	fumarate reductase, iron-sulfur subunit	fumarate reductase iron-sulfur protein similarity to COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein(Evalue: 1E-95)	
CHLTR00606	Succinate Dehydrogenase	identified by similarity to SP:P08065; match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM TIGR01811 succinate dehydrogenase, flavoprotein subunit	Succinate dehydrogenase flavoprotein subunit	InterProMatches:IPR004112; Biological Process: electron transport (GO:0006118), Molecular Function: oxidoreductase activity (GO:0016491) succinate dehydrogenase (flavoprotein subunit)	succinate dehydrogenase flavoprotein subunit	Similar to Bacillus subtilis succinate dehydrogenase flavoprotein subunit SdhA or CitF SWALL:DHSA_BACSU (SWALL:P08065) (585 aa) fasta scores: E(): 3.1e-55, 50.4% id in 613 aa, and to Chlamydia pneumoniae succinate dehydrogenase SdhA or cpn0789 or cp1083 SWALL:Q9Z7B7 (EMBL:AE001660) (626 aa) fasta scores: E(): 0, 85.25% id in 624 aa putative succinate dehydrogenase flavoprotein subunit	succinate dehydrogenase flavoprotein subunit	Ortholog of S. aureus MRSA252 (BX571856) SAR1121 putative succinate dehydrogenase flavoprotein subunit	succinate dehydrogenase flavoprotein subunit	succinate dehydrogenase flavoprotein subunit	succinate dehydrogenase flavoprotein subunit	Similar to Bacillus subtilis succinate dehydrogenase flavoprotein subunit SdhA SW:DHSA_BACSU (P08065) (585 aa) fasta scores: E(): 3.2e-186, 79.862% id in 581 aa, and to Bacillus halodurans succinate dehydrogenase flavoprotein BH3092 TR:Q9K8B4 (EMBL:AP001517) (589 aa) fasta scores: E(): 4.8e-181, 76.361% id in 588 aa putative succinate dehydrogenase flavoprotein subunit	identified by similarity to SP:P08065; match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR01811 succinate dehydrogenase, flavoprotein subunit	similar to gi|27467759|ref|NP_764396.1| [Staphylococcus epidermidis ATCC 12228], percent identity 91 in 586 aa, BLASTP E(): 0.0 succinate dehydrogenase flavoprotein subunit	succinate dehydrogenase, flavoprotein subunit identified by match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR01811	succinate dehydrogenase flavoprotein subunit	subunit of succinate dehydrogenase EC 1.3.99.1	succinate dehydrogenase or fumarate reductase, flavoprotein subunit	fumarate reductase flavoprotein subunit similarity to COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunits(Evalue: 0)	succinate dehydrogenase, flavoprotein chain TC0881, putative	transcript_id=ENSFCAT00000008041	succinate dehydrogenase, flavoprotein subunit identified by similarity to SP:P08065; match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM TIGR01811	succinate dehydrogenase flavoprotein subunit	succinate dehydrogenase or fumarate reductase, flavoprotein subunit	Succinate dehydrogenase flavoprotein subunit	succinate dehydrogenase, flavoprotein subunit	Succinate dehydrogenase flavoprotein subunit	Succinate dehydrogenase	SdhA	
CHLTR00607	Succinate Dehydrogenase	succinate dehydrogenase cytochrome b558 subunit	pseudo	pseudo	pseudo	

CHLTR00609	PHP superfamily hydrolase	Uncharacterized protein family UPF0006	TatD-related deoxyribonuclease	Putative deoxyribonuclease	YcfH protein	Similar to putative deoxyribonuclease YcfH and to probable metal-dependent hydrolase	Similar to putative deoxyribonuclease belonging to the TatD DNAse family hypothetical protein	conserved gene deoxyribonuclease TatD	Similar to putative deoxyribonuclease belonging to the TatD DNAse family hypothetical protein	DNAse	identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 deoxyribonuclease, TatD family	Uncharacterized deoxyribonuclease UU017	TatD Sec-independent protein translocase protein	similar to Sec-independent protein translocase protein TatD Mg-dependent DNase	identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 hydrolase, TatD family	Putative uncharacterized protein	deoxyribonuclease, putative	Putative deoxyribonuclease	Deoxyribonuclease, TatD related	Mg-dependent DNase	identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 hydrolase, TatD family	Putative uncharacterized protein	Deoxyribonuclease protein	PROBABLE DEOXYRIBONUCLEASE TATD	Mb1035, tatD, len: 264 aa. Equivalent to Rv1008, len: 264 aa, from Mycobacterium tuberculosis strain H37Rv, (99.6% identity in 264 aa overlap). Probable tatD (alternate gene name: yjjV), deoxyribonuclease (EC 3.1.21.-), component of twin arginine translocation protein export system (see citation below for more information). Similar to many members of the YBL055C/YJJV family e.g. YCFH_ECOLI|P37346 Putative deoxyribonuclease ycfH (EC 3.1.21.-) (265 aa), fasta scores: opt: 487, E(): 1.4e-24, (36.7% identity in 270 aa overlap). Also similar to P37545|YABD_BACSU Putative deoxyribonuclease yabD (255 aa), FASTA scores: opt: 599, E(): 7.7e-33, (40.1% identity in 262 aa overlap). Contains PS01137 Hypothetical YBL055c/yjjV family signature 1, and PS01091 Hypothetical YBL055c/yjjV family signature 3. Probable deoxyribonuclease TatD (YjjV protein)	putative TatD family deoxyribonuclease putative TatD-related deoxyribonuclease YabD	deoxyribonuclease, TatD family	Mg-dependent DNase	COG0084 Mg-dependent DNAse hypothetical protein	
CHLTR00610	Thio:disulfide Interchange Protein	COG4232 thiol:disulfide interchange protein	thiol:disulfide interchange protein DsbD	membrane-associated protein disulphide isomerase Thiol:disulfide interchange protein	Suppression of copper sensitivity protein	Thiol:disulfide interchange protein DsbD	Thiol:disulfide interchange protein	Cytochrome c biogenesis protein, transmembrane region	thiol:disulfide interchange protein DsbD, putative	suppressor for copper-sensitivity B	thioredoxin	putative suppressor for copper-sensitivity B precursor	Cytochrome c biogenesis protein, transmembrane region precursor	Thiol:disulfide interchange protein DsbD	Glucan 1,4-alpha-glucosidase	Thioredoxin, DsbD family	thiol:disulfide interchange protein COG4233 Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis	thiol-disulfide interchange protein DsbD-like	cytochrome c biogenesis protein, transmembrane protein	Thiol:disulfide interchange protein dsbD 1	cytochrome c biogenesis protein, transmembrane region PFAM: cytochrome c biogenesis protein, transmembrane region KEGG: pol:Bpro_4257 thiol-disulfide interchange protein DsbD-like	Thiol-disulfide interchange protein DsbD-like protein precursor	membrane protein, suppressor for copper-sensitivity B identified by match to protein family HMM PF02683	putative membrane protein identified by similarity to GB:AAK22204.1	DsbD thiol:disulfide interchange protein	Putative metal resistance protein precursor	Copper-sensitivity suppressor B protein	Putative ThiO:disulfide interchange protein	Hypothetical protein	
CHLTR00611	Polysaccharide transporter	IPR002898: MotA/TolQ/ExbB proton channel tol protein, membrane-spanning inner membrane proteins, required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA to cytoplasm	similar to Salmonella typhi CT18 TolQ protein TolQ protein	Similar to Chlamydia pneumoniae macromolecule transporter ExbB SWALL:Q9Z7C1 (EMBL:AE001659) (232 aa) fasta scores: E(): 1.8e-73, 85.34% id in 232 aa, and to Escherichia coli TolQ protein SWALL:TOLQ_ECOLI (SWALL:P05828) (230 aa) fasta scores: E(): 2.5e-06, 25.82% id in 213 aa putative transport protein TolQ	TolQ colicin import protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pt : putative transporter putative biopolymer transport protein (ExbB)	Tol protein, membrane-spanning inner membrane protein	substrain RIMD 0509952 inner membrane protein TolQ	identified by match to protein family HMM PF01618 biopolymer transport protein ExbB, putative	MotA/TolQ/ExbB proton channel	TolQ protein	MotA/TolQ/ExbB proton channel	MotA/TolQ/ExbB proton channel family protein	MotA/TolQ/ExbB proton channel	biopolymer transport protein	MotA/TolQ/ExbB proton channel	MotA/TolQ/ExbB proton channel	biopolymer transport proteins	MotA/TolQ/ExbB proton channel precursor	tolQ protein identified by match to protein family HMM PF01618	TolQ protein	MotA/TolQ/ExbB proton channel	TolQ colicin import protein	Biopolymer transport proteins	MotA/TolQ/ExbB proton channel	TolQ protein	tolQ protein	MotA/TolQ/ExbB proton channel	MotA/TolQ/ExbB proton channel PFAM: MotA/TolQ/ExbB proton channel KEGG: bur:Bcep18194_A3738 MotA/TolQ/ExbB proton channel	
CHLTR00612	Biopolymer Transport Protein	energy transducer	ExbD/TolR family protein	Macromolecule transport protein	Macromolecule transport protein	Transport energizing protein, ExbD/TolR family	Macromolecule transport protein	
CHLTR00613	Putative uncharacterized protein	energy transducer	histone H1-I	Histone H1-I	Histone H1-I	Histone H1-I	
CHLTR00614	Protein tolB	Protein tolB	Protein tolB	Protein tolB	TolB protein	conserved gene TolB colicin import protein	TolB protein	identified by match to protein family HMM PF04052 TolB, putative	Protein tolB	Protein tolB	Tol-Pal system beta propeller repeat protein TolB	Protein tolB	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark TolB	tol protein required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA to cytoplasm, may be part of multiprotein peptidoglycan recycling complex (Two domains)	similar to Salmonella typhi CT18 tolB protein precursor tolB protein precursor	Similar to Chlamydia pneumoniae TolB protein SWALL:TOLB_CHLPN (SWALL:Q9Z7C4) (431 aa) fasta scores: E(): 2.2e-112, 64.47% id in 425 aa, and to Brucella melitensis TolB protein SWALL:Q93TG4 (EMBL:AF358662) (443 aa) fasta scores: E(): 3.5e-15, 27.39% id in 303 aa, and to Haemophilus influenzae TolB protein SWALL:TOLB_HAEIN (SWALL:P44677) (427 aa) fasta scores: E(): 4.8e-09, 26.6% id in 312 aa putative TolB protein	similar to BR1697, tolB protein TolB, tolB protein	Protein tolB	Protein tolB	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter tolerance to colicins E2, E, A, and K, required for OM integrity	Protein tolB	periplasmic component; COG0823 Tol biopolymer transport system	Similar to: HI0382, TOLB_HAEIN TolB	Periplasmic component of the Tol biopolymer transport system TolB protein	Protein tolB	Protein tolB	tolB protein precursor, periplasmic component of the Tol biopolymer transport system	TolB protein	colicin tolerance protein	
CHLTR00615	Peptidoglycan-Associated Lipoprotein	hypothetical protein	Peptidoglycan-associated lipoprotein	OmpA/MotB	outer membrane protein, OmpA/MotB family	outer membrane protein	OmpA/MotB domain protein PFAM: OmpA/MotB domain protein KEGG: bur:Bcep18194_B1545 outer membrane protein, OmpA/MotB family	peptidoglycan-associated lipoprotein precursor (P43036) Peptidoglycan-associated lipoprotein precursor, OmpA family, palA, excC Function unclear	peptidoglycan-associated lipoprotein (Pal) family protein identified by similarity to SP:P07176; match to protein family HMM PF00691	peptidoglycan-associated lipoprotein	OmpA domain protein TIGRFAM: OmpA domain protein PFAM: OmpA/MotB domain protein KEGG: pat:Patl_2938 OmpA/MotB	Peptidoglycan-associated lipoprotein	OmpA/MotB	Peptidoglycan-associated lipoprotein precursor	Peptidoglycan-associated lipoprotein precursor	Peptidoglycan-associated lipoprotein precursor	Peptidoglycan-associated lipoprotein	putative peptidoglycan-associated lipoprotein	OmpA family protein	Pal	Peptidoglycan-associated lipoprotein	Peptidoglycan-associated lipoprotein	Peptidoglycan-associated lipoprotein; putative petide signal	
CHLTR00616	Invasin repeat family phosphatase	N-acetylmuramoyl-L-alanine amidase EC 3.5.1.28	soluble lytic murein transglycosylase and related regulatory proteins	Putative soluble transglycosylase precursor	Putative soluble transglycosylase precursor	Putative soluble transglycosylase	
CHLTR00618	Thio-Specific Antioxidant (TSA) Peroxidase	AhpC protein	Putative alkyl hydroperoxide reductase (Subunit c) oxidoreductase protein	Alkyl hydroperoxide reductase, small subunit	alkyl hydroperoxide reductase	conserved gene peroxynitrite reductase, AhpC/Tsa family	alkyl hydroperoxide reductase	thioredoxin peroxidase	Probable peroxidase	Peroxiredoxin, AhpC/TSA family	identified by similarity to OMNI:NTL01CJ00310; match to protein family HMM PF00578 antioxidant, AhpC/Tsa family	Alkyl hydroperoxide reductase C22 protein	putative thiol-alkyl hydroperoxide reductase	Peroxiredoxin	similar to Salmonella typhi CT18 probable peroxidase probable peroxidase	Similar to Chlamydia pneumoniae thio-specific antioxidant AhpC or cpn0778 SWALL:Q9Z7C8 (EMBL:AE001659) (196 aa) fasta scores: E(): 1.9e-57, 72.91% id in 192 aa, and to Homo sapiens peroxiredoxin 2 PrdX2 or TdpX1 or NkeFB SWALL:PDX2_HUMAN (SWALL:P32119) (198 aa) fasta scores: E(): 3.9e-38, 49.73% id in 191 aa putative alkyl hydroperoxide reductase	Alkyl hydroperoxide reductase TsaA	Probable peroxiredoxin	Putative alkyl hydroperoxide reductase subunit C	thioredoxin peroxidase	Similar to rp||tdpX1 rc||tdpX1 sp|P21762|TSAA_HELPY sp|P56876|TSAA_HELPJ; Ortholog to ERGA_CDS_03510 Probable peroxiredoxin (26 kDa antigen)	identified by similarity to GP:5457310; match to protein family HMM PF00578 peroxiredoxin, putative	COG0450 AhpC peroxiredoxin similar to NP_360088.1 thioredoxin peroxidase 1	Antioxidant, AhpC/Tsa family protein	alkyl hydroperoxide reductase C22 protein	Similar to: TSAA_BUCAP probable peroxiredoxin	Similar to Hordeum vulgare 2-cys peroxiredoxin Bas1, chloroplast precursor SWALL:BAS1_HORVU (SWALL:Q96468) (210 aa) fasta scores: E(): 5.3e-21, 48.78% id in 205 aa, and to Bacteroides fragilis thioredoxin peroxidase Tpx SWALL:Q938I6 (EMBL:AY050657) (210 aa) fasta scores: E(): 7.6e-87, 100% id in 210 aa, and to putative thioredoxin peroxidase	Peroxiredoxin AhpC protein	Antioxidant, AhpC/Tsa family	
CHLTR00617	Putative uncharacterized protein	conserved hypothetical protein	hypothetical membrane associated protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00619	60 kDa chaperonin	60 kDa chaperonin GroEL2	60 kDa chaperonin GroEL2	
CHLTR00620	Putative uncharacterized protein ybbC	Similar to Chlamydia pneumoniae ct605 hypothetical protein SWALL:Q9Z7D0 (EMBL:AE001659) (414 aa) fasta scores: E(): 5.5e-109, 60.82% id in 411 aa, and to Bacillus subtilis hypothetical protein YbbC SWALL:YBBC_BACSU (SWALL:P40407) (414 aa) fasta scores: E(): 2.7e-36, 35.71% id in 336 aa putative exported protein	Putative uncharacterized protein	Similar to Oceanobacillus iheyensis hypothetical conserved protein OB1304 SWALL:Q8ERJ8 (EMBL:AP004597) (509 aa) fasta scores: E(): 1.8e-64, 45% id in 420 aa, and to Bacillus halodurans hypothetical protein BH0674 SWALL:Q9KF23 (EMBL:AP001509) (418 aa) fasta scores: E(): 3.1e-63, 43.26% id in 423 aa, and to Bacillus subtilis hypothetical protein YbbC precursor SWALL:YBBC_BACSU (SWALL:P40407) (414 aa) fasta scores: E(): 9.8e-63, 43.02% id in 423 aa conserved hypothetical exported protein	conserved hypothetical protein	putative lipoprotein	conserved hypothetical protein	Putative uncharacterized protein	Protein of unknown function (DUF1343) superfamily identified by match to protein family HMM PF07075	conserved hypothetical protein	Uncharacterised conserved protein UCP016719 PFAM: Uncharacterised conserved protein UCP016719 KEGG: sma:SAV6610 hypothetical protein	hypothetical protein COG3876 Uncharacterized protein conserved in bacteria	conserved hypothetical protein Conserved hypothetical protein, 38% identity(51% similarity) to TrEMBL;Q8KAU5. TrEMBL; Q6MRD6(59% identity).  Has PF07075, Protein of unknown function (DUF1343);IPR008302, UCP016719; This family consists of several hypothetical bacterial proteins of around 400 residues in length. The function of this family is unknown.There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. Function unclear	conserved hypothetical protein identified by similarity to SP:P40407; match to protein family HMM PF07075	hypothetical exported protein	uncharacterised conserved protein UCP016719	Uncharacterised conserved protein UCP016719 PFAM: Uncharacterised conserved protein UCP016719 KEGG: dps:DP2946 hypothetical protein	Hypothetical protein	Putative uncharacterized protein	Uncharacterized conserved protein UCP016719	Uncharacterised conserved protein UCP016719	Uncharacterised conserved protein UCP016719	YbbC	Putative uncharacterized protein	Uncharacterised conserved protein UCP016719	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein ybbC	Putative uncharacterized protein	
CHLTR00622	Putative uncharacterized protein	conserved hypothetical protein	hypothetical cytosolic protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00621	Nucleoside-triphosphatase	Nucleoside-triphosphatase	nucleoside triphosphate phosphohydrolase, Ham1p homolog	Nucleoside-triphosphatase	Nucleoside-triphosphatase	Nucleoside-triphosphatase	Nucleoside-triphosphatase	Similar to conserved hypothetical protein hypothetical protein	conserved gene ribosomal protein Ham1	Similar to conserved hypothetical protein hypothetical protein	Nucleoside-triphosphatase	identified by match to protein family HMM PF01725; match to protein family HMM TIGR00042 Ham1 family protein	hypothetical protein	identified by match to protein family HMM PF01725; match to protein family HMM TIGR00042 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family	Nucleoside-triphosphatase	Nucleoside-triphosphatase	HAM1 protein homolog	HAM1 protein homolog	identified by similarity to SP:Q8XI68; match to protein family HMM PF01725; match to protein family HMM TIGR00042 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	Nucleoside-triphosphatase	Nucleoside-triphosphatase	Nucleoside-triphosphatase	Mb1376, -, len: 204 aa. Equivalent to Rv1341, len: 204 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 204 aa overlap). Conserved hypothetical protein, equivalent to ML014|U00014 hypothetical protein B1549_C2_213 from Mycobacterium leprae (285 aa), FASTA scores: opt: 1073, E(): 0, (83.0% identity in 206 aa overlap). Some similarity to P52061|YGGV_ECOLI HYPOTHETICAL PROTEIN yggV (197 aa), FASTA scores: opt: 521, E(): 7.9e-27, (46.0% identity in 200 aa overlap). CONSERVED HYPOTHETICAL PROTEIN	Ham1-like protein conserved protein YsnA	xanthosine triphosphate pyrophosphatase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark Ham1 like protein	COG0127 Xanthosine triphosphate pyrophosphatase hypothetical protein	Nucleoside-triphosphatase	HAM1 protein homolog	
CHLTR00623	Uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	identified by similarity to EGAD:12385; match to protein family HMM PF00315; match to protein family HMM PF03167; match to protein family HMM TIGR00628 uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	uracil DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	identified by similarity to SP:Q9I5H9; match to protein family HMM PF03167; match to protein family HMM TIGR00628 uracil-DNA glycosylase	Uracil-DNA glycosylase	InterProMatches:IPR002043; Molecular Function: uracil DNA N-glycosylase activity (GO:0004844), Biological Process: DNA repair (GO:0006281) uracil-DNA glycosylase	uracil-DNA glycosylase	Uracil-DNA glycosylase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark uracil-DNA glycosylase	uracil-DNA glycosylase	Uracil-DNA glycosylase	IPR002043: Uracil-DNA glycosylase; IPR003249: Uracil-DNA glycosylase, not poxvirus uracil-DNA-glycosylase	similar to Salmonella typhi CT18 uracil-DNA glycosylase uracil-DNA glycosylase	Similar to Escherichia coli uracil-DNA glycosylase Ung SWALL:UNG_ECOLI (SWALL:P12295) (228 aa) fasta scores: E(): 1.7e-39, 47.96% id in 221 aa, and to Chlamydia muridarum uracil-DNA glycosylase Ung or tc0897 SWALL:UNG_CHLMU (SWALL:Q9PJD2) (229 aa) fasta scores: E(): 5e-76, 75% id in 228 aa uracil-DNA glycosylase	Uracil-DNA glycosylase	Uracil-DNA glycosylase	
CHLTR00624	DNA Helicase	UvrD	ATP-dependent DNA helicase	ATP-dependent DNA helicase PcrA	identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073 ATP-dependent DNA helicase PcrA	DNA helicase II	DNA helicase II	ATP-dependent helicase PcrA	ATP-dependent DNA helicase	ATP-dependent DNA helicase pcrA	ATP-dependent DNA helicase	Superfamily I DNA/RNA helicase	identified by similarity to SP:Q53727; match to protein family HMM PF00580 ATP-dependent DNA helicase, UvrD/REP family	UvrD	ATP-dependent DNA helicase pcrA	Mb0974, uvrD1, len: 771 aa. Equivalent to Rv0949, len: 771 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 771 aa overlap). Probable uvrD1, ATP dependent DNA helicase (EC 3.6.1.-), equivalent to P_301239.1|NC_002677 putative ATP-dependent DNA helicase from Mycobacterium leprae (778 aa). Also highly similar to others e.g. CAB92660.1|AL356832 from Streptomyces coelicolor (831 aa) (N-terminus longer); P56255|PCRA_BACST from Bacillus stearothermophilus (724 aa); Q10213|YAY5_SCHPO from Schizosaccharomyces pombe (Fission yeast) (887 aa), FASTA scores: opt: 927, E(): 0, (33.5% identity in 659 aa overlap); etc. Also similar to several other UvrD-like proteins in Mycobacterium tuberculosis e.g. Rv3201c, Rv3198c, Rv3202c. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE UVRD SUBFAMILY OF HELICASES. Note that previously known as uvrD. PROBABLE ATP DEPENDENT DNA HELICASE UVRD1	ATP-dependent DNA helicase, UvrD/REP family	ATP-dependent helicase	UvrD protein	ATP-dependent helicase PcrA	Superfamily I DNA and RNA helicase, UvrD	Similar to Escherichia coli DNA helicase II UvrD or MutU or PdeB or Rad or RecL SWALL:UVRD_ECOLI (SWALL:P03018) (720 aa) fasta scores: E(): 9.8e-75, 38.23% id in 646 aa, and to Chlamydia pneumoniae DNA helicase UvrD SWALL:Q9Z7D4 (EMBL:AE001658) (639 aa) fasta scores: E(): 2.5e-184, 75.39% id in 634 aa, and to Bacillus stearothermophilus ATP-dependent DNA helicase PcrA SWALL:PCRA_BACST (SWALL:P56255) (724 aa) fasta scores: E(): 6.3e-90, 44.25% id in 644 aa DNA helicase II, UvrD	DNA helicase II	Putative uncharacterized protein gbs1209	ATP-depentend DNA helicase	Putative ATP-DEPENDENT DNA HELICASE	identified by match to PFAM protein family HMM PF00580 ATP-dependent DNA helicase PcrA	Ortholog of S. aureus MRSA252 (BX571856) SAR1997 ATP-dependent DNA helicase	ATP-depentend DNA helicase	
CHLTR00625	RNA Polymerase Sigma-54	Sigma-54 factor family	RNA polymerase sigma-54 factor	RNA polymerase sigma-54 factor (sigma-L)	conserved gene RNA polymerase signma-54 factor RpoN	RNA polymerase sigma-54 factor (sigma-L)	DNA-directed RNA polymerase, sigma factor 54	identified by similarity to SP:P26979; match to protein family HMM PF00309; match to protein family HMM PF04552; match to protein family HMM PF04963 RNA polymerase sigma-54 factor	RNA polymerase N (Sigma54) factor	RNA polymerase sigma-54 factor	identified by similarity to SP:P24255; match to protein family HMM PF00309; match to protein family HMM PF04552; match to protein family HMM PF04963 RNA polymerase sigma-54 factor	RNA polymerase sigma-54 factor	InterProMatches:IPR000394; Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription initiation (GO:0006352) RNA polymerase sigma-54 factor (sigma-L)	DNA-directed RNA polymerase sigma-54 factor sigma-L	IPR000394: Sigma-54 factor family; IPR007046: Sigma-54 factor, core binding domain; IPR007634: Sigma-54, DNA-binding domain sigma N (sigma 54) factor of RNA polymerase, pleiotrophic functions (nitrogen metabolism, formate degradation, phage shock response)	similar to Salmonella typhi CT18 RNA polymerase sigma-54 factor (sigma-N) RNA polymerase sigma-54 factor (sigma-N)	Similar to Azotobacter vinelandii RNA polymerase sigma-54 factor RpoN or NtrA SWALL:RP54_AZOVI (SWALL:P08623) (502 aa) fasta scores: E(): 8.6e-29, 32.38% id in 386 aa, and to Chlamydia pneumoniae RNA polymerase sigma-54 factor RpoN SWALL:Q9Z7D5 (EMBL:AE001658) (440 aa) fasta scores: E(): 1.7e-99, 59.33% id in 423 aa RNA polymerase sigma-54 factor	RNA polymerase sigma 54 factor	similar to BR0158, RNA polymerase sigma-54 factor RpoN, RNA polymerase sigma-54 factor	RNA polymerase sigma-54 factor	RNA polymerase sigma-54 factor	RNA polymerase sigma-54 factor	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type f : factor RNA polymerase sigma-54 factor	RNA polymerase sigma-54 factor	COG1508 sigma54 homolog	RNA polymerase sigma-54 factor RpoN	Similar to Shewanella violacea RNA polymerase sigma-54 factor RpoN SWALL:RP54_SHEVI (SWALL:Q9S0L2) (492 aa) fasta scores: E(): 9.7e-22, 31.16% id in 507 aa, and to Bacteroides thetaiotaomicron RNA polymerase sigma-54 BT2521 SWALL:Q8A4S6 (EMBL:AE016936) (494 aa) fasta scores: E(): 2.9e-149, 86.84% id in 494 aa putative RNA polymerase sigma-54 factor	RNA polymerase sigma-54 factor	DNA-directed RNA polymerase specialized sigma 54/60 subunit	
CHLTR00626	PqqC-like protein	Similar to Chlamydia trachomatis hypothetical protein Ct610 SWALL:O84616 (EMBL:AE001331) (231 aa) fasta scores: E(): 9.8e-62, 71.56% id in 218 aa. Only significant full-length database matches are to Chlamydiaceae proteins. conserved hypothetical protein	Coenzyme PQQ synthesis protein C	Pyrroloquinoline-quinone synthase	Coenzyme PQQ synthesis protein C	Coenzyme PQQ synthesis C	Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C	coenzyme PQQ synthesis protein C identified by similarity to SP:Q9L3B2; match to protein family HMM PF05312	Coenzyme PQQ synthesis C	Coenzyme PQQ biosynthesis protein C	coenzyme PQQ synthesis protein C	TENA/THI-4 protein	TENA/THI-4 protein PFAM: TENA/THI-4 protein KEGG: mag:amb2534 hypothetical protein	TENA/THI-4 protein	Putative coenzyme PQQ synthesis protein	Putative uncharacterized protein	TenA/THI-4 protein KEGG: rme:Rmet_3633 TenA/THI-4 protein	TENA/THI-4 domain protein PFAM: TENA/THI-4 domain protein KEGG: neu:NE1434 putative coenzyme PQQ synthesis protein C, putative	coenzyme PQQ synthesis protein C	coenzyme PQQ synthesis protein C (Coenzyme PQQ synthesis protein I) Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 7665488; Product type c : carrier	Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C	Coenzyme PQQ synthesis protein C	Tena/thi-4 family protein	Possible coenzyme PQQ synthesis protein	Pyrroloquinoline-quinone synthase	Putative uncharacterized protein	coenzyme PQQ biosynthesis protein C unknown EC_number=1.3.3.11 KEGG: pen:PSEEN0396 coenzyme PQQ synthesis protein C (coenzyme PQQ synthesis protein I) TIGRFAM: coenzyme PQQ biosynthesis protein C PFAM: TENA/THI-4 domain protein	Coenzyme PQQ biosynthesis protein C	TENA/THI-4 domain protein	
CHLTR00627	Putative uncharacterized protein	Similar to Chlamydia pneumoniae ct611 hypothetical protein Cpj0760 SWALL:Q9JSA6 (EMBL:AP002547) (246 aa) fasta scores: E(): 7.4e-64, 63.48% id in 241 aa, and to Methanosarcina acetivorans hypothetical protein Ma3512 SWALL:Q8TKA2 (EMBL:AE011060) (268 aa) fasta scores: E(): 1.4e-16, 36.52% id in 230 aa conserved hypothetical protein	Putative uncharacterized protein	best blastp match gb|AAK33531.1| (AE006511) conserved hypothetical protein [Streptococcus pyogenes M1 GAS] conserved hypothetical protein	conserved hypothetical protein	hypothetical protein	conserved hypothetical protein	CofE putative F420-0:gamma-L-glutamate ligase; pfam01996	hypothetical protein	hypothetical protein	oxidoreductase	hypothetical protein	Uncharacterised conserved protein UCP005026	Uncharacterised conserved protein UCP005026 TIGRFAM: Uncharacterised conserved protein UCP005026 PFAM: protein of unknown function DUF129 KEGG: mth:MTH1019 hypothetical protein	Uncharacterised conserved protein UCP005026	hypothetical protein	F420-dependent oxidoreductase, putative TIGRFAM: F420-dependent oxidoreductase, putative PFAM: protein of unknown function DUF129 KEGG: nph:NP1054A hypothetical protein	hypothetical protein	Hypothetical protein	Hypothetical protein	Hypothetical protein	F420-dependent oxidoreductase, putative	F420-dependent oxidoreductase	F420-dependent oxidoreductase, putative	Coenzyme F420-0 gamma-glutamyl ligase	F420-dependent oxidoreductase	F420-dependent oxidoreductase, putative TIGRFAM: F420-dependent oxidoreductase, putative PFAM: protein of unknown function DUF129 KEGG: rrs:RoseRS_1136 F420-dependent oxidoreductase, putative	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00628	Dihydrofolate Reductase	Dihydrofolate reductase	Dihydrofolate reductase	Probable dihydrofolate reductase oxidoreductase protein	Dihydrofolate reductase	Dihydrofolate reductase	Dihydrofolate reductase	Dihydrofolate reductase	Dihydrofolate reductase	InterProMatches:IPR001796; glycine/purine/DNA precursor synthesis, conversion of dUMP to dTMP,Molecular Function: dihydrofolate reductase activity (GO:0004146), Biological Process: glycine biosynthesis (GO:0006545), Biological Process: nucleotide biosynthesis (GO:0009165) dihydrofolate reductase	Dihydrofolate reductase	IPR001796: Dihydrofolate reductase dihydrofolate reductase type I; trimethoprim resistance	similar to Salmonella typhi CT18 dihydrofolate reductase type I dihydrofolate reductase type I	Similar to Staphylococcus haemolyticus dihydrofolate reductase DfrD SWALL:DYR_STAHA (SWALL:Q54277) (166 aa) fasta scores: E(): 5.6e-12, 31.64% id in 158 aa, and to Chlamydia pneumoniae dihydrofolate reductase FolA SWALL:Q9Z7E7 (EMBL:AE001657) (170 aa) fasta scores: E(): 2.2e-34, 54.71% id in 159 aa dihydrofolate reductase	Putative uncharacterized protein dfrA	Dihydrofolate reductase	dihydrofolate reductase	identified by match to PFAM protein family HMM PF00186 dihydrofolate reductase	Dihydrofolate reductase type I; trimethoprim resistance	Dihydrofolate reductase	Ortholog of S. aureus MRSA252 (BX571856) SAR1439 dihydrofolate reductase type I	dihydrofolate reductase	identified by match to protein family HMM PF00186 dihydrofolate reductase	Dihydrofolate reductase	Dihydrofolate reductase	Similar to: HI0899, DYR_HAEIN dihydrofolate reductase	Dihydrofolate reductase FolA protein	Dihydrofolate reductase	Dihydrofolate reductase	
CHLTR00629	Folate synthesis bifunctional protein	Similar to Q821E2 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate synthase from Chlamydophila caviae (447 aa). FASTA: opt: 517 Z-score: 602.2 E(): 1.2e-25 Smith-Waterman score: 604; 30.664 identity in 437 aa overlap 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate synthase	go_component: cytoplasm [goid 0005737]; go_function: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity [goid 0003848]; go_function: dihydroneopterin aldolase activity [goid 0004150]; go_function: dihydropteroate synthase activity [goid 0004156]; go_process: folic acid and derivative biosynthesis [goid 0009396] folic acid synthesis protein	bifunctional PppK and DhpS Folate synthesis bifunctional protein	Dihydropteroate synthase, DHPS	dihydropteroate synthase	Folate synthesis bifunctional protein bifunctional (PPPK and DHPS)	folate synthesis bifunctional protein 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) and dihydropteroate synthase (EC 2.5.1.15)	dihydropteroate synthase	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate synthase Similar to Q821E2 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate synthase from Chlamydophila caviae (447 aa). FASTA: opt: 517 Z-score: 602.2 E(): 1.2e-25 Smith-Waterman score: 604; 30.664 identity in 437 aa overlap	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase Dihydropteroate synthase	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate synthase	predicted protein go_function: dihydropteroate synthase activity; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity; go_process: folic acid and derivative biosynthesis	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase/dihydropteroate synthase	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/Dihydropteroate synthase	Magnaporthe grisea hypothetical protein	Botrytis cinerea hypothetical protein	hypothetical protein	Folate synthesis bifunctional protein	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	Folate synthesis bifunctional protein	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase, Dihydropteroate synthase	jgi|Lacbi1|247939|e_gww1.7.86.1	Dihydropteroate synthase	2-amino-4-hydroxy-6-hydroxymethyldihydropteridi ne pyrophosphokinase	2-amino-4-hydroxy-6-hydroxymethyldihydropteridi ne pyrophosphokinase	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase/dihydropteroate synthase	pseudo	
CHLTR00630	Probable dihydroneopterin aldolase	Similar to O84620 Probable dihydroneopterin aldolase (124 aa) fasta scores; opt: 191 Z-score: 262.4 E(): 9.2e-07 Smith-Waterman score: 191; 30.189identity in 106 aa overlap dihydroneopterin aldolase	Dihydroneopterin aldolase	dihydroneopterin aldolase EC 4.1.2.25	dihydroneopterin aldolase Similar to O84620 Probable dihydroneopterin aldolase (124 aa) fasta scores; opt: 191 Z-score: 262.4 E(): 9.2e-07 Smith-Waterman score: 191; 30.189identity in 106 aa overlap	dihydroneopterin aldolase	Possible dihydroneopterin aldolase	dihydroneopterin aldolase	dihydroneopterin aldolase	Putative dihydroneopterin aldolase	Dihydroneopterin aldolase	Dihydroneopterin aldolase	Dihydroneopterin aldolase	Dihydroneopterin aldolase	Dihydroneopterin aldolase	Dihydroneopterin aldolase	Dihydroneopterin aldolase	Dihydroneopterin aldolase	
CHLTR00631	RNA polymerase sigma factor rpoD	RNA polymerase sigma factor	RNA polymerase sigma factor	RNA polymerase sigma factor rpoD (Sigma-70)	conserved gene RNA polymerase sigma 70 factor (RpoD)	RNA polymerase sigma factor rpoD (Sigma-70)	identified by similarity to SP:Q59753; match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545 RNA polymerase sigma-70 factor RpoD	RNA polymerase sigma factor	RNA polymerase sigma factor rpoD	RNA polymerase sigma factor	RNA polymerase sigma factor	IPR000943: Sigma-70 factor family; IPR007127: Sigma-70 factor, region 1.1; IPR007624: Sigma-70 region 3;IPR007627: Sigma-70 region 2;IPR007630: Sigma-70 region 4;IPR007631: Sigma-70, non-essential region sigma D (sigma 70) factor of RNA polymerase, major sigma factor during exponential growth	similar to Salmonella typhi CT18 RNA polymerase sigma-70 factor RNA polymerase sigma-70 factor	Similar to Chlamydia psittaci major sigma factor sigA SWALL:Q59302 (EMBL:U04442) (571 aa) fasta scores: E(): 3e-195, 99.12% id in 571 aa major sigma factor	RNA polymerase sigma factor	RNA polymerase sigma factor	Similar to sp|P33451|RPSD_RICPR sp|P33452|RPSD_AGRT5 sp|Q59753|RPSD_RHIME sp|P52324|RPSD_CAUCR; Ortholog to ERGA_CDS_03350 RNA polymerase sigma factor rpoD	RNA polymerase sigma factor	RNA polymerase sigma factor rpoD	RNA polymerase sigma factor rpoD	DNA-directed RNA polymerase, sigma subunit	Similar to sp|P33451|RPSD_RICPR sp|P33452|RPSD_AGRT5 sp|Q59753|RPSD_RHIME sp|P52324|RPSD_CAUCR; Ortholog to ERWE_CDS_03390 RNA polymerase sigma factor rpoD	identified by similarity to SP:P00579; match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF04546; match to protein family HMM TIGR02393 RNA polymerase sigma factor RpoD	identified by similarity to SP:P52326; match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF04546; match to protein family HMM TIGR02393 RNA polymerase sigma factor RpoD	Sigma-70 region 1.2	Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70, non-essential region:Sigma-70 region 1.2	Best Blastp Hit: sp|P52325|RPSD_NEIGO RNA polymerase sigma factor RPOD (SIGMA-70) >gi|808742|gb|AAA67115.1| (L42289) sigma 70 [Neisseria gonorrhoeae] COG0568 DNA-dependent RNA polymerase sigma subunits putative RNA polymerase sigma factor	regulation of proteins induced at high temperatures; Code: K; COG: COG0568 RNA polymerase, sigma(70) factor	RNA polymerase sigma factor rpoD	
CHLTR00632	UPF0242 protein CT_616	conserved hypothetical protein	hypothetical membrane associated protein	Putative integral membrane protein	Putative integral membrane protein	Putative integral membrane protein	
CHLTR00633	30S ribosomal protein S20	30S ribosomal protein S20	30S ribosomal protein S20	Similar to Escherichia coli 30s ribosomal protein S20 RpsT SWALL:RS20_ECOLI (SWALL:P02378) (86 aa) fasta scores: E(): 0.00022, 36.7% id in 79 aa, and to Chlamydia pneumoniae 30s ribosomal protein S20 RpsT SWALL:RS20_CHLPN (SWALL:Q9Z7F2) (99 aa) fasta scores: E(): 2.6e-20, 69.07% id in 97 aa 30s ribosomal protein S20	30S ribosomal protein S20	Similar to Q87S93 Ribosomal protein S20 from Vibrio parahaemolyticus (86 aa). FASTA: opt: 399 z-score: 552.1 E(): 6.7e-23 Smith-Waterman score: 399; 73.256 identity in 86 aa overlap 30S ribosomal protein S20	30S ribosomal protein S20	identified by similarity to SP:P21477; match to protein family HMM PF01649; match to protein family HMM TIGR00029 ribosomal protein S20	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 7539334, 9642084, 12051911; Product type s : structural protein 30S ribosomal subunit protein S20	ribosomal protein S20 TIGRFAMsMatches:TIGR00029	30S ribosomal protein S20	ribosomal protein S20 PFAM: ribosomal protein S20: (2.3e-35) KEGG: sil:SPO0148 ribosomal protein S20, ev=2e-37, 90% identity	30S ribosomal protein S20	30S ribosomal protein S20	ribosomal protein S20p	30S ribosomal protein S20 identified by match to protein family HMM PF01649; match to protein family HMM TIGR00029	30S ribosomal protein S20 Similar to Q87S93 Ribosomal protein S20 from Vibrio parahaemolyticus (86 aa). FASTA: opt: 399 z-score: 552.1 E(): 6.7e-23 Smith-Waterman score: 399; 73.256 identity in 86 aa overlap	ribosomal protein S20	ribosomal protein S20 identified by match to protein family HMM PF01649; match to protein family HMM TIGR00029	ribosomal protein S20 PFAM: ribosomal protein S20 KEGG: hch:HCH_05937 ribosomal protein S20	Ribosomal protein S20	ribosomal protein S20 identified by match to protein family HMM PF01649; match to protein family HMM TIGR00029	ribosomal protein S20 PFAM: ribosomal protein S20 KEGG: lxx:Lxx14710 30S ribosomal protein S20	SSU ribosomal protein S20P	ribosomal protein S20	Ribosomal protein S20	Ribosomal protein S20	30S ribosomal protein S20	ribosomal protein S20	
CHLTR00634	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative membrane protein	Putative membrane protein	Putative membrane protein	
CHLTR00635	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00636	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00637	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00638	CHLPN 76kDa Homolog	wall surface anchor family protein	CHLPN 76 kD protein-like	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00639	CHLPN 76kDa Homolog	hypothetical protein	CHLPN 76 kD protein-like	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00640	Virulence factor mviN homolog	Virulence factor MVIN-like	MviN protein	Probable transmembrane protein	Virulence factor MviN	similar to integral membrane protein MviN hypothetical protein	similar to integral membrane protein MviN hypothetical protein	virulence factor MviN homolog.	identified by similarity to SP:O05467; match to protein family HMM PF03023; match to protein family HMM TIGR01695 integral membrane protein MviN	Inner membrane virulence factor protein	Virulence factor	Uncharacterized membrane protein	identified by similarity to SP:O25551; match to protein family HMM PF03023; match to protein family HMM TIGR01695 integral membrane protein MviN	Integral membrane protein MviN	Virulence factor MviN	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark virulence factor	putative virulence factor	Uncharacterized membrane protein, virulence factor MviN	similar to Salmonella typhi CT18 virulence factor MviN virulence factor MviN	Similar to Chlamydia muridarum virulence factor MviN homologue or tc0913 SWALL:MVIN_CHLMU (SWALL:Q9PJB9) (536 aa) fasta scores: E(): 1.6e-153, 72.6% id in 533 aa. The Chlamydia trachomatis orthologue of this gene is expressed during natural infection. putative membrane protein	Putative uncharacterized protein	similar to BR0143, virulence factor MviN MviN, virulence factor	Virulence factor	Virulence factor mviN homolog	Virulence factor mviN, possible MOP Superfamliy efflux pump	Putative inner membrane virulence factor protein	Virulence factor mviN protein	conserved hypothetical protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pf : putative factor putative virulence factor MviN family (multidrug/oligosaccharidyl-lipid/polysaccharide exporter superfamily)	
CHLTR00641	Probable endonuclease 4	Probable endonuclease 4	Probable endonuclease 4	endonuclease IV	Probable endonuclease 4	Probable endonuclease 4	identified by match to protein family HMM PF01261; match to protein family HMM TIGR00587 endonuclease IV	Probable endonuclease 4	Probable endonuclease IV	sigmaG regulon; Molecular Function: DNA binding (GO:0003677), Molecular Function: endonuclease activity (GO:0004519), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281) type IV apurinic/apyrimidinic endonuclease	endodeoxyribonuclease IV endonuclease IV	Endonuclease IV	IPR001719: AP endonuclease, family 2 endonuclease IV	similar to Salmonella typhi CT18 endonuclease IV endonuclease IV	Similar to Chlamydia pneumoniae probable endonuclease IV cpn0732 or cp0014 SWALL:END4_CHLPN (SWALL:Q9Z7H3) (293 aa) fasta scores: E(): 3.3e-91, 74.04% id in 289 aa, and to Escherichia coli, and Escherichia coli O157:H7 endonuclease IV Nfo SWALL:END4_ECOLI (SWALL:P12638) (285 aa) fasta scores: E(): 1.2e-42, 43.21% id in 280 aa putative endonuclease IV	hypothetical protein, similar to endonuclease IV	Probable endonuclease 4	Ortholog of S. aureus MRSA252 (BX571856) SAR1634 putative endonuclease	hypothetical protein, similar to endonuclease IV	identified by similarity to SP:P12638; match to protein family HMM PF01261; match to protein family HMM TIGR00587 endonuclease IV	endonuclease IV	Similar to Escherichia coli, and Escherichia coli O157:H7 endonuclease IV Nfo or B2159 or Z3416 or ECS3051 SWALL:END4_ECOLI (SWALL:P12638) (285 aa) fasta scores: E(): 2.1e-72, 66.54% id in 278 aa, and to Bacteroides thetaiotaomicron endonuclease IV BT4651 SWALL:Q89YT0 (EMBL:AE016946) (277 aa) fasta scores: E(): 1e-97, 86.49% id in 274 aa, and to Salmonella typhi probable endonuclease IV Nfo or STY2438 or t0652 SWALL:END4_SALTI (SWALL:Q8Z593) (285 aa) fasta scores: E(): 2.4e-74, 68.7% id in 278 aa putative endonuclease IV	Probable endonuclease 4	Probable endonuclease 4	endonuclease IV	Endonuclease IV	deoxyribonuclease IV, phage T4-induced (endonuclease IV)	hypothetical protein, similar to endonuclease IV	identified by sequence similarity; putative; ORF located using Blastx; COG0648 endonuclease IV	
CHLTR00642	30S ribosomal protein S4	30S ribosomal protein S4 B	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30s ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal subunit protein S4	conserved gene 30S ribosomal protein S4	30S ribosomal subunit protein S4	30S ribosomal protein S4	identified by match to protein family HMM PF00163; match to protein family HMM PF01479; match to protein family HMM TIGR01017 ribosomal protein S4	30S ribosomal protein S4	SSU ribosomal protein S4P	30S ribosomal protein S4	identified by match to protein family HMM PF00163; match to protein family HMM PF01479; match to protein family HMM TIGR01017 ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	identified by similarity to SP:P02354; match to protein family HMM PF00163; match to protein family HMM PF01479; match to protein family HMM TIGR01017 ribosomal protein S4	30S ribosomal protein S4	Ribosomal protein S4	30S ribosomal protein S4	Mb3487c, rpsD, len: 201 aa. Equivalent to Rv3458c, len: 201 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 201 aa overlap). Probable rpsD, 30S ribosomal protein S4, equivalent to Q9X799|RS4_MYCLE|RPSD|ML1958|MLCB1222.28c 30S RIBOSOMAL PROTEIN S4 from Mycobacterium leprae (201 aa), FASTA scores: opt: 1271, E(): 2.2e-73, (93.5% identity in 201 aa overlap); and P45811|RS4_MYCBO|RPSD from Mycobacterium bovis (131 aa), FASTA scores: opt: 867, E(): 4.9e-48, (100.0% identity in 130 aa overlap). Also highly similar to others e.g. P81288|RS4_BACST|RPSD from Bacillus stearothermophilus (198 aa), FASTA scores: opt: 665, E(): 4e-35, (52.25% identity in 201 aa overlap); Q9K7Z8|RPSD|BH3209 from Bacillus halodurans (200 aa), FASTA scores: opt: 626, E(): 1.2e-32, (48.75% identity in 203 aa overlap); Q9X1I3|RS4_THEMA|RPSD|TM1473 from Thermotoga maritima (209 aa), FASTA scores: opt: 591, E(): 2e-30, (45.0% identity in 209 aa overlap); etc. Contains ribosomal protein S4 signature (PS00632) and ATP/GTP binding site motif (PS00017). BELONGS TO THE S4P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 30S RIBOSOMAL PROTEIN S4 RPSD	InterProMatches:IPR005709; Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: protein biosynthesis (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935) ribosomal protein S4	
CHLTR00643	UPF0176 protein CT_627	UPF0176 protein SAV2689	UPF0176 protein WIGBR0650	UPF0176 protein plu1816	identified by match to protein family HMM PF00581 rhodanese-like domain protein	Rhodanese-related sulfurtransferases	hypothetical protein	identified by match to protein family HMM PF00581 rhodanese-like domain protein	conserved hypothetical protein	Hypothetical UPF0176 protein SE0262	UPF0176 protein Pro_1101	Rhodanese-related sulfurtransferase protein	conserved hypothetical protein with rhodanese domain	sulfurtransferase	UPF0176 protein ymdE	IPR001763: Rhodanese-like putative enzyme related to sulfurtransferases	Predicted sulfurtransferase	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Similar to Chlamydia trachomatis hypothetical protein Ct627 ct627 SWALL:Y627_CHLTR (SWALL:O84632) (327 aa) fasta scores: E(): 3.1e-105, 80% id in 325 aa, and to Chlamydia muridarum hypothetical protein Tc0916 tc0916 SWALL:Y916_CHLMU (SWALL:Q9PJB6) (328 aa) fasta scores: E(): 7.7e-103, 77.84% id in 325 aa, and to Chlamydia pneumoniae hypothetical protein cpn0734 or cp0012 or cpj0734 SWALL:Y734_CHLPN (SWALL:Q9Z7H1) (324 aa) fasta scores: E(): 5.8e-106, 78.15% id in 325 aa. conserved hypothetical protein	similar to BRA0086, rhodanese family protein rhodanese family protein	UPF0176 protein gbs1504	UPF0176 protein BQ10070	conserved hypotehtical protein	identified by match to PFAM protein family HMM PF00581 rhodanese-like domain protein	UPF0176 protein YPTB2488	Ortholog of S. aureus MRSA252 (BX571856) SAR2771 conserved hypothetical protein	conserved hypotehtical protein	UPF0176 protein SPy_0915/M5005_Spy0717	best blastp match gb|AAK33831.1| (AE006540) conserved hypothetical protein [Streptococcus pyogenes M1 GAS] conserved hypothetical protein	
CHLTR00644	Geranylgeranyl pyrophosphate synthase	COG0142 Geranylgeranyl pyrophosphate synthase geranylgeranyl diphosphate (GGPP) synthase	Similar to Chlamydia trachomatis geranylgeranyl pyrophosphate synthase IspA or ct628 SWALL:O84633 (EMBL:AE001333) (291 aa) fasta scores: E(): 2.9e-62, 58.51% id in 282 aa, and to Escherichia coli geranyltranstransferase IspA or b0421 SWALL:ISPA_ECOLI (SWALL:P22939) (299 aa) fasta scores: E(): 2.8e-20, 35.29% id in 272 aa geranylgeranyl pyrophosphate synthase	Dimethylallyltransferase/geranyltranstransferase	best blastp match gb|AAK34297.1| (AE006583) putative geranyltranstransferase (farnesyl diphosphate synthase) [Streptococcus pyogenes M1 GAS] putative geranyltranstransferase	Geranylgeranyl pyrophosphate synthase IspA protein	substrain RIMD 0509952 geranyltranstransferase	ortholog to Escherichia coli bnum: b0421; MultiFun: Metabolism 1.5.3.19 geranyltranstransferase	geranyltranstransferase dimethylallyltransferase	Farnesyl-diphosphate synthase	polyprenyl synthetase	Polyprenyl synthetase	Dimethylallyltransferase / Geranyltranstransferase bifunctional	Farnesyl-diphosphate synthase	isoprenyl synthetase	Dimethylallyltransferase / Geranyltranstransferase bifunctional	geranylgeranyl pyrophosphate synthase EC 2.5.1.29	Polyprenyl synthetase	Geranyltranstransferase	dimethylallyltransferase geranyltranstransferase	geranyltranstransferase identified by similarity to SP:Q08291; match to protein family HMM PF00348	Polyprenyl synthetase PFAM: Polyprenyl synthetase KEGG: cya:CYA_0377 geranylgeranyl diphosphate synthase	Polyprenyl synthetase	Geranyltranstransferase cytoplasmic protein	Geranylgeranyl pyrophosphate synthase	Geranyltranstransferase cytoplasmic protein	Polyprenyl synthetase	Dimethylallyltransferase / Geranyltranstransferase bifunctional	Geranylgeranyl pyrophosphate synthase	
CHLTR00645	UDP-GlcNAc Pyrophosphorylase	Similar to C-terminal region of Escherichia coli bifunctional GlmU protein [includes: N-terminal UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) and glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.57)] SWALL:GLMU_ECOLI (SWALL:P17114) (456 aa) fasta scores: E(): 2.1e-06, 29.32% id in 208 aa, and to Sulfolobus tokodaii putative glucose-1-phosphate thymidylyltransferase St0452 SWALL:Q975F9 (EMBL:AP000982) (401 aa) fasta scores: E(): 1.2e-18, 38.54% id in 179 aa putative glucosamine-1-phosphate N-acetyltransferase	Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunit	Code: R; COG: COG0110 putative transferase	UDP-GlcNAc pyrophosphorylase	glucosamine-1-phosphate acetyltransferase	putative transferase; LpxA family Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type e : enzyme	Putative UDP-N-acetylglucosamine diphosphorylase	Putative hexapeptide transferase	Glucosamine-1-phosphate acetyltransferase	Glucosamine-1-phosphate acetyltransferase	Glucose-1-phosphate thymidylyltransferase	Transferase hexapeptide repeat containing protein	UDP-N-acetylglucosamine pyrophosphorylase	Glucosamine-1-phosphate acetyltransferase	Bacterial transferase hexapeptide repeat protein	Putative UDP-N-acetylglucosamine diphosphorylase	
CHLTR00646	HTH Transcriptional Regulatory Protein and Receiver Domain	Phosphate regulon transcriptional regulatory protein phoB	two-component system regulator llrA Helix Turn Helix domain	Two component transcriptional regulator, winged helix family protein precursor	two component transcriptional regulator, winged helix family PFAM: response regulator receiver; transcriptional regulator domain protein KEGG: aba:Acid345_2990 two component transcriptional regulator, winged helix family	two component transcriptional regulator, winged helix family TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB PFAM: response regulator receiver; transcriptional regulator domain protein KEGG: pst:PSPTO_5477 phosphate regulon transcriptional regulatory protein PhoB	CpxR transcriptional regulatory protein	two component transcriptional regulator, winged helix family protein TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB PFAM: response regulator receiver; transcriptional regulator domain protein KEGG: ppr:PBPRA0721 putative DNA-binding response regulator PhoB	Response regulator in two-component regulatory system with PhoR (Or CreC), regulation of Pi uptake	two component transcriptional regulator, winged helix family TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB PFAM: response regulator receiver; transcriptional regulator domain protein KEGG: pol:Bpro_2257 two component transcriptional regulator, winged helix family	Two component transcriptional regulator, winged helix family precursor	Two component transcriptional regulator, winged helix family precursor	PFAM: response regulator receiver; transcriptional regulator domain protein KEGG: shw:Sputw3181_3330 two component transcriptional regulator, winged helix family two component transcriptional regulator, winged helix family	Two component transcriptional regulator, winged helix family precursor	Transcriptional regulatory protein	Transcriptional regulatory protein	Two component transcriptional regulator, winged helix family	Two component transcriptional regulator, winged helix family	Two component transcriptional regulator, winged helix family	Two component transcriptional regulator, winged helix family	Two component transcriptional regulator, winged helix family	Response regulator receiver:Transcriptional regulatory protein	Two component transcriptional regulator, winged helix family	Two component transcriptional regulator PhoB, winged helix family	Transcriptional regulatory protein	Two component transcriptional regulator, winged helix family	Transcriptional regulator	
CHLTR00647	Putative uncharacterized protein	hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00648	UPF0159 protein CT_632	conserved hypothetical protein	alternative thymidylate synthase-like	predicted alternative thymidylate synthase	alternative thymidylate synthase-like protein KEGG: aba:Acid345_4490 alternative thymidylate synthase-like	cation efflux system protein	Thymidylate synthase	Thymidylate synthase complementing protein ThyX	Thymidylate synthase complementing protein ThyX precursor	Hypothetical protein	thymidylate synthase complementing protein ThyX PFAM: thymidylate synthase complementing protein ThyX KEGG: rrs:RoseRS_0926 thymidylate synthase complementing protein ThyX	Thymidylate synthase complementing protein ThyX	Putative uncharacterized protein	Putative uncharacterized protein	Thymidylate synthase complementing protein ThyX	Thymidylate synthase complementing protein ThyX	Thymidylate synthase complementing protein ThyX	Thymidylate synthase complementing protein ThyX	Putative uncharacterized protein	Thymidylate synthase complementing protein ThyX	Thymidylate synthase complementing protein ThyX	Putative uncharacterized protein	
CHLTR00649	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	identified by similarity to SP:Q59643; match to protein family HMM PF00490 porphobilinogen synthase	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Mb0525, hemB, len: 329 aa. Equivalent to Rv0512, len: 329 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 329 aa overlap). Probable hemB, delta-aminolevulinic acid dehydratase (EC 4.2.1.24), equivalent to 46723|HEM2_MYCLE DELTA-AMINOLEVULINIC ACID DEHYDRATASE from Mycobacterium leprae (329 aa). Also highly similar to many e.g. P54919|HEM2_STRCO from Streptomyces coelicolor (330 aa); HEM2_ECOLI|P15002 from Escherichia coli (323 aa), FASTA scores: opt: 942, E(): 0, (47.6% identity in 317 aa overlap); etc. Contains PS00169 Delta-aminolevulinic acid dehydratase active site. BELONGS TO THE ALADH FAMILY. COFACTOR: ZINC. PROBABLE DELTA-AMINOLEVULINIC ACID DEHYDRATASE HEMB (PORPHOBILINOGEN SYNTHASE) (ALAD) (ALADH)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Similar to Chlorobium vibrioforme delta-aminolevulinic acid dehydratase HemB SWALL:HEM2_CHLVI (SWALL:Q59334) (328 aa) fasta scores: E(): 4.6e-58, 48.08% id in 314 aa, and to Chlamydia pneumoniae delta-aminolevulinic acid dehydratase cpn0744 or cp0001 SWALL:HEM2_CHLPN (SWALL:Q9Z7G1) (332 aa) fasta scores: E(): 6.6e-102, 76.07% id in 326 aa putative delta-aminolevulinic acid dehydratase	similar to BR0757, delta-aminolevulinic acid dehydratase HemB, delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Putative delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Similar to rc||hemB rp||hemB sp|P45622|HEM2_BRAJA sp|Q59643|HEM2_PSEAE sp|P42504|HEM2_RHOCA; Ortholog to ERGA_CDS_02720 Delta-aminolevulinic acid dehydratase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme delta-aminolevulinic acid dehydratase (Porphobilinogen synthase)	COG0113 HemB delta-aminolevulinic acid dehydratase delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	COG0113 delta-aminolevulinic acid dehydratase	delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase HemB protein	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase (EC 4.2.1.24), gene: NE2457	delta-aminolevulinic acid dehydratase	
CHLTR00650	Probable Na(+)-translocating NADH-quinone reductase subunit A	Na+-translocating NADH:ubiquinone oxidoreductase subunit Nrq1	Na(+)-translocating NADH-quinone reductase subunit A	identified by match to protein family HMM PF05896; match to protein family HMM TIGR01936 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit	Similar to Haemophilus influenzae Na+-translocating NADH-quinone reductase NqrA SWALL:NQRA_HAEIN (SWALL:P43955) (447 aa) fasta scores: E(): 5.6e-29, 31.31% id in 463 aa, and to Chlamydia pneumoniae probable Na+-translocating NADH-quinone reductase cpn0743 or cp0002 SWALL:NQRA_CHLPN (SWALL:Q9Z7G2) (467 aa) fasta scores: E(): 1.2e-138, 73.54% id in 465 aa putative cation translocating reductase subunit	Na(+)-translocating NADH-quinone reductase subunit A	Putative Na(+)-translocating NADH-ubiquinone reductase subunit A	Na(+)-translocating NADH-quinone reductase, A subunit	Na(+)-translocating NADH-quinone reductase subunit A	Na(+)-translocating NQR subunit A; Na(+)-NQR subunit A; NQR complex subunit A; NQR-1 subunit A; Similar to: HI0164, NQRA_HAEIN Na(+)-translocating NADH-quinone reductase subunit A	Similar to Vibrio cholerae Na+-translocating NADH-quinone reductase NqrA or vc2295 SWALL:NQRA_VIBCH (SWALL:Q9KPS1) (446 aa) fasta scores: E(): 1.8e-48, 34.37% id in 448 aa, and to Bacteroides thetaiotaomicron Na+-translocating NADH-quinone reductase subunit BT1160 SWALL:AAO76267 (EMBL:AE016930) (449 aa) fasta scores: E(): 4e-154, 87.75% id in 449 aa, and to Porphyromonas gingivalis 50 kDa antigen PG1 SWALL:Q9X6S0 (EMBL:AF144076) (451 aa) fasta scores: E(): 1.1e-89, 54.18% id in 454 aa putative Na+-translocating NADH-quinone reductase subunit A	Na+-transporting NADHubiquinone oxidoreductase alpha subunit NqrA protein	Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA	identified by match to protein family HMM PF05896; match to protein family HMM TIGR01936 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit	Na+-translocating NADH-ubiquinone oxidoreductase, subunit A	Best Blastp Hit: pir||A81919 probable sodium-translocating NADH dehydrogenase (ubiquinone) (EC 1.6.5.-) chain A NMA0752 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379473|emb|CAB84035.1| (AL162754) putative Na(+)-translocating NADH-ubiquinone reductase subunit A [Neisseria meningitidis]; NqrA putative Na(+)-translocating NADH-ubiquinone reductase subunit A	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 7805867, 9490015, 7805866, 11248188; Product type t : transporter Na(+)-translocating NADH-quinone reductase subunit A (Na(+)-translocating NADH-quinone reductase subunit alpha) (Na(+)-translocating NQR subunit A) (Na(+)-NQR subunit A) (NQR complex subunit A)	NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit	NADH:ubiquinone oxidoreductase, subunit A	NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit TIGRFAMsMatches:TIGR01936	Na (+)-translocating NADH-quinone reductase subunit A EC 1.6.5.-	NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit: (1.1e-177) PFAM: Na-translocating NADH-quinone reductase subunit A: (1.1e-191) KEGG: sil:SPOA0028 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit, ev=1e-171, 67% identity	NADH:ubiquinone oxidoreductase, Na(+)- translocating, A subunit	Na+-transporting NADH:ubiquinone oxidoreductase,subunit A	NADH-ubiquinone oxidoreductase subunit A	Na+-translocating NADH:ubiquinone oxidoreductase subunit Nrq1	NADH:ubiquinone oxidoreductase, subunit A	Na-translocating NADH-quinone reductase subunit A	Na(+)-translocating NADH-quinone reductase, subunit A	
CHLTR00651	Protein CT_635	hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00652	Transcription elongation factor greA	Transcription elongation factor	Transcription elongation factor GreA fused to uncharacterized associated domain	transcription elongation and transcript cleavage factor	Transcription elongation factor	greA transcription elongation factor-related protein cytoplasmic protein	greA transcription elongation factor-related protein cytoplasmic protein	GreA transcription elongation factor	GreA/GreB family elongation factor	Transcription elongation factor	Transcription elongation factor	GreA transcription elongation factor-related protein	Transcriptional elongation factor, GreA/GreB family	GreA/GreB family elongation factor	Transcription elongation factor GreA	Transcription elongation factor EF	Transcription elongation factor EF	Transcription elongation factor GreA	Transcription elongation factor	Transcription elongation factor	
CHLTR00653	Aromatic AA Aminotransferase	AspC protein	Probable aromatic-amino-acid aminotransferase protein	identified by similarity to SP:P95468; match to protein family HMM PF00155 aromatic amino acid aminotransferase	Aromatic-amino-acid transaminase	Aromatic-amino-acid aminotranferase	Aspartate aminotransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark aromatic-amino-acid aminotransferase	Similar to Chlamydia pneumoniae aromatic amino acid aminotransferase TyrB or cpn0740 or cp0005 SWALL:Q9Z7G5 (EMBL:AE001655) (395 aa) fasta scores: E(): 3.4e-102, 64.81% id in 395 aa, and to Escherichia coli aromatic-amino-acid aminotransferase TyrB SWALL:TYRB_ECOLI (SWALL:P04693) (397 aa) fasta scores: E(): 7e-52, 36.96% id in 395 aa putative aromatic amino acid aminotransferase	Aromatic-amino-acid aminotransferase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme tyrosine aminotransferase, tyrosine repressible, PLP-dependent	aspartate aminotransferase	transaminase A; ASPAT; Similar to: HI1617, AAT_HAEIN aspartate aminotransferase	Aspartate/aromatic aminotransferase TyrB protein	aromatic-amino-acid aminotransferase	identified by similarity to SP:P00509; match to protein family HMM PF00155 aspartate aminotransferase	transaminase A; ASPAT aspartate aminotransferase	identical to GB:AAK73815.1: aspartate aminotransferase {Trypanosoma brucei;} PMID:11443076; go_component: cytoplasm [goid 0005737]; go_function: aspartate transaminase activity [goid 0004069]; go_process: biosynthesis [goid 0009058]; go_process: methionine salvage [goid 0019509] aspartate aminotransferase	ortholog to Escherichia coli bnum: b0928; MultiFun: Metabolism 1.1.3, 1.5.1.5 aspartate aminotransferase	identified by match to protein family HMM PF00155 aromatic-amino-acid aminotransferase	Aminotransferase, class I and II	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 3897210; Product type e : enzyme aspartate aminotransferase (Transaminase A) (ASPAT)	aromatic-amino-acid aminotransferase	Aspartate transaminase	Aspartate transaminase	Aspartate transaminase	transcript_id=ENSDNOT00000004957	Aspartate/tyrosine/aromatic aminotransferase COG1448	aromatic amino acid aminotransferase	
CHLTR00654	Putative uncharacterized protein	cell division related rod shape-determining membrane protein	cell shape-determining protein	Exported protein precursor	Exported protein precursor	Exported protein	

CHLTR00656	Exodeoxyribonuclease V beta chain	RecB protein	Exodeoxyribonuclease V beta chain	conserved gene ATP-dependent DNA helicase (UvrD/Rep helicase)	Exodeoxyribonuclease V, beta subunit	Exonuclease V, beta chain	IPR000212: UvrD/REP helicase; IPR004586: Exodeoxyribonuclease V, beta subunit exonuclease V, beta chain	ATP-dependent exoDNAse (exonuclease V) beta subunit, RecB	similar to Salmonella typhi CT18 exonuclease V subunit exonuclease V subunit	Similar to Chlamydia pneumoniae exodeoxyribonuclease V beta chain cpn0738 or cp0007 SWALL:EX5B_CHLPN (SWALL:Q9Z7G7) (1050 aa) fasta scores: E(): 0, 59.18% id in 1056 aa, and to Salmonella typhimurium exonuclease V, beta chain STM2994 SWALL:Q8ZMB6 (EMBL:AE008837) (1181 aa) fasta scores: E(): 7.4e-25, 24.65% id in 1160 aa putative UvrD/REP helicase	ATP-dependent nuclease subunit A	Exodeoxyribonuclease V beta chain	Putative exodeoxyribonuclease V beta chain	Similar to rp||addA sp|P57529|EX5B_BUCAI; Ortholog to ERGA_CDS_06470 Putative Exodeoxyribonuclease V beta chain	conserved family - putative ATP-dependent nuclease hypothetical protein	Exodeoxyribonuclease V, beta subunit	exodeoxyribonuclease V beta chain	Similar to: HI1321, EX5B_HAEIN exodeoxyribonuclease V beta chain	ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) RecB protein	Exodeoxyribonuclease V, beta subunit	RecB ATP-dependent exoDNAse (exonuclease V) beta subunit	Exodeoxyribonuclease V beta chain	Exonuclease V, beta chain	Similar to rp||addA sp|P57529|EX5B_BUCAI; Ortholog to ERWE_CDS_06560 Putative Exodeoxyribonuclease V beta chain	beta chain with recC and recD; 5' and 3' nuclease, ATPase, recombinase, helicase; ortholog to Escherichia coli bnum: b2820; MultiFun: Information transfer 2.1.3, 2.1.5; Metabolism 1.2.2 exonuclease V	identified by match to protein family HMM PF00580; match to protein family HMM TIGR00609 exodeoxyribonuclease V, beta subunit	identified by match to protein family HMM PF00580; match to protein family HMM TIGR00609 exodeoxyribonuclease V, beta subunit	Exodeoxyribonuclease V, beta subunit	Best Blastp Hit: pir||F81158 exodeoxyribonuclease V 135 KD polypeptide NMB0785 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226017|gb|AAF41198.1| (AE002432) exodeoxyribonuclease V 135 KD polypeptide [Neisseria meningitidis MC58] COG1074 ATP-dependent exo DNAse (exonuclease V) putative exodeoxyribonuclease	
CHLTR00657	Exodeoxyribonuclease V, Gamma	exodeoxyribonuclease V, gamma subunit	conserved hypothetical protein	Exodeoxyribonuclease V, RecC subunit	Exodeoxyribonuclease V, gamma subunit	exodeoxyribonuclease V gamma chain	Exodeoxyribonuclease V gamma chain	Exodeoxyribonuclease V gamma chain	Exodeoxyribonuclease V gamma chain	Exodeoxyribonuclease V gamma chain	Putative exodeoxyribonuclease V, gamma subunit	
CHLTR00658	Predicted Efflux Protein	Probable transmembrane protein	Putative uncharacterized protein	Putative phospholipid/glycerol acyltransferase transmembrane protein	Lysophospholipid transporter lplT	similar to unknown protein hypothetical protein	conserved gene, permeases of major facilitator superfamily-like 2-acylglycerophosphoethanolamine acyltransferase	similar to unknown protein hypothetical protein	identified by match to protein family HMM PF00083 major facilitator superfamily protein	Probable transporter	TcaB protein	identified by similarity to GP:4115707; match to protein family HMM PF00083 major facilitator superfamily protein	Molecular Function: transporter activity (GO:0005215), Biological Process: transport (GO:0006810), Cellular Component: integral to membrane (GO:0016021) Major facilitator superfamily, transporter	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 2-acylglycerophosphoethanolamine acyltransferase	putative efflux protein, resistance protein	similar to Salmonella typhi CT18 putative membrane protein putative membrane protein	Similar to Chlamydia pneumoniae hypothetical protein Cp0009 SWALL:Q9K2F0 (EMBL:AE002164) (569 aa) fasta scores: E(): 2.3e-147, 67.42% id in 571 aa and to Chlamydia pneumoniae efflux protein YgeD or cpn0736 SWALL:Q9Z7G9 (EMBL:AE001655) (565 aa) fasta scores: E(): 7.3e-146, 67.19% id in 567 aa, and to Chlamydia trachomatis efflux protein YgeD or ct641 SWALL:O84647 (EMBL:AE001334) (559 aa) fasta scores: E(): 4.4e-130, 60.46% id in 564 aa putative membrane protein	Putative uncharacterized protein gbs1550	2-acylglycerophosphoethanolamine acyltransferase	identified by match to PFAM protein family HMM PF00083 multi-drug resistance protein	Lysophospholipid transporter lplT	Putative integral membrane protein	conserved hypothetical protein	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein; putative membrane protein	Putative membrane protein	COG0477 1-acyl-sn-glycerol-3-phosphate acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferase macrolide-efflux protein	Acyltransferase	Lysophospholipid transporter lplT	
CHLTR00659	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative membrane protein	Putative membrane protein	Putative membrane protein	


CHLTR00660	DNA Topoisomerase I-Fused to SWI Domain	DNA topoisomerase 1	DNA topoisomerase 1	DNA topoisomerase I (omega-protein)	DNA topoisomerase	DNA topoisomerase I	conserved gene DNA topoisomerase I	DNA topoisomerase I	DNA topoisomerase	identified by similarity to EGAD:20536; match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051 DNA topoisomerase I	DNA topoisomerase I	DNA topoisomerase I	DNA topoisomerase I	identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051 DNA topoisomerase I	DNA topoisomerase	DNA topoisomerase I	DNA topoisomerase 1	DNA topoisomerase I topA-like protein	DNA topoisomerase I	DNA topoisomerase	identified by similarity to SP:P39814; match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051 DNA topoisomerase I	InterProMatches:IPR005733; DNA unwinding protein removing negative supercoils,Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA topoisomerase type I activity (GO:0003917), Cellular Component: chromosome (GO:0005694), Biological Process: DNA topological change (GO:0006265), Biological Process: DNA unwinding (GO:0 DNA topoisomerase I	DNA topoisomerase IA TopA	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark DNA topoisomerase I	COG0550 Topoisomerase IA DNA topoisomerase I	DNA topoisomerase	DNA topoisomerase 1	IPR000380: DNA topoisomerase I DNA topoisomerase type I, omega protein	similar to Salmonella typhi CT18 DNA topoisomerase I, omega protein I DNA topoisomerase I, omega protein I	
CHLTR00661	Predicted oxidoreductase	Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family	Putative trna-dihydrouridine synthase protein	Similar to putative dehydrogenase YhdG of Escherichia coli	Similar to tRNA-dihydrouridine synthase B hypothetical protein	conserved gene nitrogen regulation protein	Similar to tRNA-dihydrouridine synthase B hypothetical protein	Transcription regulator	tRNA-dihydrouridine synthase	nitrogen regulation protein NifR3 homolog	identified by similarity to SP:Q08111; match to protein family HMM PF01207; match to protein family HMM TIGR00737 tRNA-dihydrouridine synthase, putative	Regulatory gene required to sense and relay the nitrogen status	possible transcriptional regulator	Transcriptional regulator	identified by similarity to SP:P25717; match to protein family HMM PF01207 tRNA-dihydrouridine synthase B	Putative uncharacterized protein	tRNA-dihydrouridine synthase protein	Probable tRNA-dihydrouridine synthase	Mb0846c, -, len: 389 aa. Equivalent to Rv0823c, len: 389 aa, from Mycobacterium tuberculosis strain H37Rv, (99.5% identity in 389 aa overlap). Possible transcriptional regulator (resembles nitrogen regulation protein), equivalent (but longer 24 aa in N-terminus) to MLU15182_31|U15182|NtrB NtrB protein from Mycobacterium leprae (384 aa), FASTA scores: opt: 2070, E(): 0, (82.3% identity in 384 aa overlap) (see citation below). Also highly similar to CAB63312.1|AL133471|SCC82.03c hypothetical protein from Streptomyces coelicolor (406 aa); and to many transcriptional regulators members of UPF0034 FAMILY (NIFR3/SMM1) e.g. D26185|BAC180K_143 protein similar to transcriptional regulator (nitrogen regulation protein) from Bacillus subtilis (333 aa), FASTA scores: opt: 609, E(): 1.4e-32, (38.3% identity in 326 aa overlap); NP_349795.1|NC_003030 NifR3 family enzyme from Clostridium acetobutylicum (321 aa); etc. Contains PS01136 Uncharacterized protein family UPF0034 signature. POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN	Biological Process: tRNA processing (GO:0008033), Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: FAD binding (GO:0050660) putative Dihydrouridine synthase TIM-barrel protein	tRNA-dihydrouridine synthase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	COG0042 tRNA-dihydrouridine synthase transcriptional regulator	Oxidoreductase	IPR001269: Protein of unknown function UPF0034; IPR003009: FMN/related compound-binding core; IPR004652: Putative TIM-barrel protein nifR3 putative TIM-barrel enzyme, possibly dehydrogenase	tRNA-dihydrouridine synthase	Contains Pfam match to entry PF01207 UPF0034, Dihydrouridine synthase (Dus, involved in tRNA modification), score 222.9, E-value 3e-64. Similar to Chlamydia trachomatis predicted oxidoreductase SWALL:O84650 (EMBL:AE001335) (334 aa) fasta scores: E(): 7.8e-97, 76.59% id in 329 aa, and to Thermoanaerobacter tengcongensis predicted TIM-barrel enzymes, possibly dehydrogenases, NifR3 family Tte0344 SWALL:Q8RCR8 (EMBL:AE013007) (322 aa) fasta scores: E(): 5.1e-36, 37.42% id in 318 aa putative dihydrouridine synthase	Putative uncharacterized protein	similar to BR1119, nitrogen regulation protein Nifr3 NifR3, nitrogen regulation protein Nifr3	
CHLTR00662	Putative uncharacterized protein	Cell division protein	identified by match to protein family HMM PF02325 ylmG protein	hypothetical protein YCF19	Hypothetical protein SE0865	Similar to YlmG; Cellular Component: membrane (GO:0016020) conserved hypothetical protein	conserved hypothetical protein	Similar to Chlamydia muridarum hypothetical protein Tc0014 SWALL:Q9PLT1 (EMBL:AE002270) (98 aa) fasta scores: E(): 1.1e-30, 66.32% id in 98 aa, and to Bacillus halodurans hypothetical protein Bh2548 SWALL:Q9K9U7 (EMBL:AP001515) (84 aa) fasta scores: E(): 6.9e-09, 48.38% id in 62 aa conserved inner membrane protein	conserved hypothetical protein	Ortholog of S. aureus MRSA252 (BX571856) SAR1166 putative membrane protein	conserved hypothetical protein	conserved hypothetical integral membrane protein	similar to unknown protein	Similar to Bacillus subtilis hypothetical protein YlmG TR:O31729 (EMBL:Z99112) (90 aa) fasta scores: E(): 2.4e-14, 51.724% id in 87 aa, and to Bacillus halodurans hypothetical protein BH2548 TR:Q9K9U7 (EMBL:AP001515) (84 aa) fasta scores: E(): 8.2e-12, 46.988% id in 83 aa putative membrane protein	identified by match to protein family HMM PF02325 YlmG protein	identified by similarity to GB:BAC08086.1; match to protein family HMM PF02325 conserved hypothetical protein	conserved hypothetical protein identified by match to protein family HMM PF02325	probable membrane protein	Integral membrane protein COG0392 [S] Predicted integral membrane protein	integral membrane protein	conserved hypothetical protein	Cell division membrane protein	Cell division membrane protein	integral membrane protein	Hypothetical protein	Cell division membrane protein	Hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00663	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein precursor	Putative uncharacterized protein precursor	Putative uncharacterized protein	
CHLTR00664	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00665	Putative uncharacterized protein	phophatidylinositol-4-phosphate 5-kinase	hypothetical secreted protein	MORN variant repeat protein	Putative membrane protein	Putative membrane protein	Putative membrane protein	MORN repeat protein	
CHLTR00666	Formyltetrahydrofolate synthetase	hypothetical protein	Putative uncharacterized protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	Similar to Chlamydia pneumoniae formyltetrahydrofolate cycloligase SWALL:Q9Z7E3 (EMBL:AE001658) (180 aa) fasta scores: E(): 3.2e-32, 52.87% id in 174 aa, and to Aquifex aeolicus hypothetical protein Aq_1731 SWALL:O67621 (EMBL:AE000753) (186 aa) fasta scores: E(): 4.2e-09, 29.41% id in 170 aa, and to Caulobacter crescentus 5-formyltetrahydrofolate cyclo-ligase Cc3245 SWALL:Q9A3F9 (EMBL:AE005988) (214 aa) fasta scores: E(): 6.4e-08, 32.27% id in 189 aa formyltetrahydrofolate cycloligase	similar to BR1723, 5-formyltetrahydrofolate cyclo-ligase family protein 5-formyltetrahydrofolate cyclo-ligase family protein	Putative uncharacterized protein	Hypothetical protein	Similar to sp|P44905|YGFA_HAEIN sp|Q8K9E3|Y396_BUCAP sp|P09160|YGFA_ECOLI; Ortholog to ERGA_CDS_05030 Conserved hypothetical protein	conserved hypothetical protein	Similar to sp|P44905|YGFA_HAEIN sp|Q8K9E3|Y396_BUCAP sp|P09160|YGFA_ECOLI; Ortholog to ERWE_CDS_05120 Conserved hypothetical protein	5-formyltetrahydrofolate cyclo-ligase	Best Blastp Hit: emb|CAB83635.1| (AL162752) hypothetical protein NMA0330 [Neisseria meningitidis] COG0212 5-formyltetrahydrofolate cyclo-ligase conserved hypothetical protein	5-formyltetrahydrofolate cyclo-ligase	identified by match to protein family HMM PF01812 5-formyltetrahydrofolate cyclo-ligase family protein	5-formyltetrahydrofolate cyclo-ligase	5-Formyltetrahydrofolate cyclo-ligase	formyltetrahydrofolate cycloligase	putative 5-formyltetrahydrofolate cyclo-ligase	5-formyltetrahydrofolate cyclo-ligase	5-formyltetrahydrofolate cyclo-ligase family protein identified by match to protein family HMM PF01812	5-formyltetrahydrofolate cyclo-ligase PFAM: 5-formyltetrahydrofolate cyclo-ligase KEGG: mta:Moth_2140 5-formyltetrahydrofolate cyclo-ligase	5-formyltetrahydrofolate cyclo-ligase family protein identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727	5-formyltetrahydrofolate cyclo-ligase	conserved hypothetical protein identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	hypothetical protein similarity to COG0212 5-formyltetrahydrofolate cyclo-ligase(Evalue: 4E-28)	5-formyltetrahydrofolate cyclo-ligase family protein identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727	5-formyltetrahydrofolate cyclo-ligase	5-formyltetrahydrofolate cyclo-ligase PFAM: 5-formyltetrahydrofolate cyclo-ligase KEGG: cch:Cag_0899 5-formyltetrahydrofolate cyclo-ligase, putative	
CHLTR00667	Protein recA	Protein recA	Protein recA	Protein recA	recA protein	Protein recA	Protein recA	RecA protein	conserved gene RecA bacterial DNA recombination protein	RecA protein	Protein recA	identified by similarity to OMNI:SA1304; match to protein family HMM PF00154 recA protein	Protein recA	RecA	recombination protein RecA	Protein recA	recombination protein A	Protein recA	Protein recA	Protein recA	Protein recA	identified by similarity to SP:P42440; match to protein family HMM PF00154 RecA	Protein recA	Protein recA	InterProMatches:IPR001553; involved in DNA repair and homologous recombination,Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Molecular Function: DNA-dependent ATPase activity (GO:0008 multifunctional SOS repair regulator	recombination protein A	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark RecA	RecA recombinase A recombination protein	

CHLTR00668	Putative uncharacterized protein	conserved hypothetical protein	hypothetical exported protein	Putative exported lipoprotein precursor	Putative exported lipoprotein precursor	Putative exported lipoprotein	
CHLTR00669	Exodeoxyribonuclease V, Alpha	RecD	PROBABLE EXONUCLEASE V (ALPHA CHAIN) RECD	Mb0645c, recD, len: 575 aa. Equivalent to Rv0629c, len: 575 aa, from Mycobacterium tuberculosis strain H37Rv, (99.8% identity in 575 aa overlap). Probable recD, exonuclease V, alpha chain (exodeoxyribonuclease V, alpha chain) (EC 3.1.11.5), highly similar to other exonucleases e.g. AF157643_3|AAD46809.1|recD Escherichia coli RecD protein homolog from Mycobacterium smegmatis (554 aa); P04993|EX5A_ECOLI|B2819 exodeoxyribonuclease v 67kd polypeptide (EC 3.1.11.5) (EXONUCLEASE V ALPHA CHAIN) from Escherichia coli strain K12 (608 aa), FASTA scores: opt: 512, E(): 1.9e-24, (36.9% identity in 582 aa overlap); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop). CONSIST OF THREE SUBUNITS; RECB|Rv0630c, RECC|Rv0631c AND RECD. PROBABLE EXONUCLEASE V (ALPHA CHAIN) RECD (EXODEOXYRIBONUCLEASE V ALPHA CHAIN) (EXODEOXYRIBONUCLEASE V POLYPEPTIDE)	Similar to Escherichia coli exodeoxyribonuclease V alpha chain recD SWALL:EX5A_ECOLI (SWALL:P04993) (608 aa) fasta scores: E(): 9.3e-05, 25.33% id in 592 aa, and to Chlamydia pneumoniae exodeoxyribonuclease V SWALL:Q9JRZ2 (EMBL:AE002268) (493 aa) fasta scores: E(): 2.9e-108, 56.7% id in 492 aa exodeoxyribonuclease V alpha chain	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme exonuclease V, alpha subunit	Exodeoxyribonuclease V	probable exodeoxyribonuclease V, alpha subunit RecD	Exodeoxyribonuclease V	ATP-dependent dsDNA/ssDNA exodeoxyribonuclease V alpha EC 3.1.11.5	Exodeoxyribonuclease V, alpha subunit	Exodeoxyribonuclease V	Exodeoxyribonuclease V, alpha subunit	Exodeoxyribonuclease V, alpha subunit	exodeoxyribonuclease V, alpha subunit TIGRFAM: exodeoxyribonuclease V, alpha subunit KEGG: cte:CT1070 exodeoxyribonuclease V, alpha subunit	exodeoxyribonuclease V, alpha subunit identified by match to protein family HMM TIGR01447	Exodeoxyribonuclease V, alpha subunit	exodeoxyribonuclease V, alpha subunit TIGRFAM: exodeoxyribonuclease V, alpha subunit KEGG: mmc:Mmcs_0897 exodeoxyribonuclease V, alpha subunit	exodeoxyribonuclease V, a chain COG_category L;COG_number COG0507; RecD	exodeoxyribonuclease V alpha chain	Probable exonuclease V (Alpha chain) recD	exodeoxyribonuclease V, alpha subunit KEGG: mmc:Mmcs_0897 exodeoxyribonuclease V, alpha subunit TIGRFAM: exodeoxyribonuclease V, alpha subunit SMART: AAA ATPase	Exodeoxyribonuclease V alpha chain	Exodeoxyribonuclease V, alpha subunit	Exonuclease V, alpha subunit	Putative exonuclease V alpha chain	exodeoxyribonuclease V, alpha subunit KEGG: mmc:Mmcs_0897 exodeoxyribonuclease V, alpha subunit TIGRFAM: exodeoxyribonuclease V, alpha subunit SMART: AAA ATPase	Exodeoxyribonuclease V KEGG: son:SO2147 exodeoxyribonuclease V, alpha subunit	Exodeoxyribonuclease V alpha chain	
CHLTR00670	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00671	ABC Transporter ATPase	ABC transporter	ABC transporter ATP-binding protein	Putative ABC transporter	ABC transporter ATP-binding protein	ABC transporter ATP-binding protein	ABC transporter, ATPase subunit	ABC transporter related	ABC transporter ATP-binding protein	ABC transporter, ATP-binding protein	ABC transporter ATP-binding protein	
CHLTR00672	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00673	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase)	conserved gene 2-dehydro-3-deoxyphosphonooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase)	2-dehydro-3-deoxyphosphooctonate aldolase kdsA carboxysome formation protein CcmA	identified by similarity to SP:Q46225; match to protein family HMM PF00793; match to protein family HMM TIGR01362 3-deoxy-8-phosphooctulonate synthase	2-dehydro-3-deoxyphosphooctonate aldolase	identified by similarity to SP:Q46225; match to protein family HMM PF00793; match to protein family HMM TIGR01362 3-deoxy-8-phosphooctulonate synthase	3-deoxy-8-phosphooctulonate synthase	Similar to Chlamydia psittaci putative 2-dehydro-3-deoxyphosphooctonate aldolase KdsA SWALL:KDSA_CHLPS (SWALL:Q46225) (269 aa) fasta scores: E(): 5.2e-104, 95.91% id in 269 aa, and to Escherichia coli 2-dehydro-3-deoxyphosphooctonate aldolase KdsA SWALL:KDSA_ECOLI (SWALL:P17579) (284 aa) fasta scores: E(): 1.4e-41, 45.97% id in 261 aa 2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	similar to BR1133, 2-dehydro-3-deoxyphosphooctonate aldolase KdsA, 2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	COG2877 2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	Similar to Pseudomonas aeruginosa 2-dehydro-3-deoxyphosphooctonate aldolase KdsA or Pa3636 SWALL:KDSA_PSEAE (SWALL:Q9ZFK4) (281 aa) fasta scores: E(): 4.1e-40, 45.52% id in 268 aa, and to Bacteroides thetaiotaomicron 2-dehydro-3-deoxyphosphooctonate aldolase BT4321 SWALL:AAO79426 (EMBL:AE016944) (266 aa) fasta scores: E(): 6.4e-89, 91.35% id in 266 aa, and to Chlorobium tepidum 2-dehydro-3-deoxyphosphooctonate aldolase KdsA or CT0088 SWALL:Q8KG80 (EMBL:AE012788) (280 aa) fasta scores: E(): 6.5e-48, 51.96% id in 254 aa putative 2-dehydro-3-deoxyphosphooctonate aldolase	Similar to KDSA_XANCP (Q8P9Z5) 2-dehydro-3-deoxyphosphooctonate aldolase from Xanthomonas campestris (pv. campestris) (276 aa). FASTA: opt: 1300 Z-score: 1617.4 E(): 3.4e-82 Smith-Waterman score: 1300; 70.741 identity in 270 aa overlap. 2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55) (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS)	2-dehydro-3-deoxyphosphooctonate aldolase	2-Dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxy-phosphooctonate aldolase	3-deoxy-D-manno-octulosonic acid (KDO) 8- phosphate synthase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	3-deoxy-8-phosphooctulonate synthase	2-dehydro-3-deoxyphosphooctonate aldolase	
CHLTR00674	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00675	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00676	Pseudouridine Synthase	Ribosomal large subunit pseudouridine synthase D	Pseudouridine synthase	Pseudouridine synthase	Pseudouridine synthase	Ribosomal large subunit pseudouridine synthase D	Pseudouridine synthase	Ribosomal large subunit pseudouridine synthase D (Pseudouridylate synthase) (Uracil hydrolyase)	conserved gene ribosomal large subunit pseudouridine synthase D, RluD	Ribosomal large subunit pseudouridine synthase D (Pseudouridylate synthase) (Uracil hydrolyase)	Pseudouridine synthase	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 ribosomal large subunit pseudouridine synthase, RluD subfamily	Pseudouridine synthase	Ribosomal large subunit pseudouridine synthase D	ribosomal large subunit pseudouridine synthase D	identified by similarity to SP:P33643; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 ribosomal large subunit pseudouridine synthase D	Pseudouridine synthase	ribosomal large subunit pseudouridine synthase D	Ribosomal large subunit pseudouridine synthase D	Hypothetical protein SE0872	Pseudouridine synthase	Pseudouridine synthase	Uncharacterized RNA pseudouridine synthase Rv1540/MT1592	Mb1567, -, len: 308 aa. Equivalent to Rv1540, len: 308 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 308 aa overlap). Member of the yabO/yceC/yfiI family of hypothetical proteins, similar to P44445|YFII_HAEIN hypothetical protein HI0176 from Haemophilus influenzae (324 aa), FASTA scores: opt: 437, E(): 1.2e-22, (33.2% identity in 322 aa overlap).  Equivalent to AL049478|MLCL458_13 hypothetical protein from Mycobacterium leprae (308 aa), (89.3% identity in 307 aa overlap). Contains PS01129 hypothetical yabO/yceC/yfiI family signature. CONSERVED HYPOTHETICAL PROTEIN MEMBER OF yabO/yceC/yfiI FAMILY	Molecular Function: pseudouridylate synthase activity (GO:0004730) Pseudouridine synthase	pseudouridine synthase	Ribosomal large subunit pseudouridine synthase D	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ribosomal large subunit pseudouridine synthase D	pseudouridine synthase	
CHLTR00677	UPF0109 protein CT_659	similar to YlqC conserved hypothetical protein	RNA-binding protein	Putative uncharacterized protein TTHA1034	Putative uncharacterized protein yqbA	Similar to Chlamydia pneumoniae protein cpn0720 or cp0026 or cpj0720 SWALL:Y720_CHLPN (SWALL:Q9Z7I5) (78 aa) fasta scores: E(): 1.5e-25, 92.3% id in 78 aa conserved hypothetical protein	Putative uncharacterized protein gbs1427	identified by match to PFAM protein family HMM PF00013 KH domain protein	Hypothetical protein	identified by similarity to SP:O31738 conserved hypothetical protein	conserved hypothetical protein	conserved hypothetical protein; KH domain family	identified by similarity to SP:Q8XJP5 conserved hypothetical protein	conserved hypothetical protein	identified by similarity to GB:AAN58581.1 conserved hypothetical protein	conserved hypothetical protein	identified by similarity to SP:Q97I96 conserved hypothetical protein	Hypothetical protein	Predicted KH domain RNA-binding protein	KH, type 1	RNA binding protein COG1837 [R] Predicted RNA-binding protein (contains KH domain)	nucleic acid binding protein	RNA-binding protein	conserved hypothetical protein KEGG: sth:STH1467 hypothetical protein	conserved hypothetical protein identified by similarity to SP:Q97I96	Nucleic acid binding protein, containing KH domain	predicted RNA-binding protein (contains KH domain)	Hypothetical protein	hypothetical protein similarity to COG1837 Predicted RNA-binding protein (KH domain)	
CHLTR00678	DNA Gyrase Subunit A	DNA topoisomerase IV	DNA gyrase subunit A topoisomerase II, EC 5.99.1.3	DNA topoisomerase IV	DNA gyrase subunit A	DNA topoisomerase	DNA gyrase subunit A	DNA gyrase subunit A	DNA topoisomerase	Putative uncharacterized protein	DNA topoisomerase IV	DNA topoisomerase IV, A subunit	DNA gyrase, A subunit	Topoisomerase IV subunit A	DNA gyrase/topoisomerase IV, A subunit domain protein	DNA gyrase subunit A	
CHLTR00679	DNA Gyrase Subunit B	DNA gyrase subunit B	Similar to Chlamydia trachomatis topoisomerase IV subunit B ParE SWALL:O85120 (EMBL:AF044268) (554 aa) fasta scores: E(): 2.1e-82, 50.08% id in 563 aa, and to Bacteroides thetaiotaomicron DNA topoisomerase IV subunit B BT3033 SWALL:Q8A3C1 (EMBL:AE016938) (625 aa) fasta scores: E(): 0, 92.46% id in 624 aa, and to Porphyromonas gingivalis W83 DNA topoisomerase IV, B subunit, putative PG0368 SWALL:AAQ65577 (EMBL:AE017173) (644 aa) fasta scores: E(): 3.6e-133, 63.05% id in 636 aa putative topoisomerase IV subunit B	DNA gyrase subunit B topoisomerase II, EC 5.99.1.3	DNA topoisomerase IV	topoisomerase IV subunit B	DNA topoisomerase IV, subunit B	DNA gyrase subunit B	DNA topoisomerase IV subunit B	DNA topoisomerase IV subunit B	Topoisomerase IV subunit B	DNA topoisomerase type IIA subunit B region 2 domain protein precursor	DNA topoisomerase, type IIA, subunit B, region 2 domain protein	DNA gyrase subunit B	DNA gyrase subunit B	DNA topoisomerase type IIA subunit B region 2 domain protein	Putative uncharacterized protein	Putative uncharacterized protein	DNA topoisomerase IV B subunit	DNA topoisomerase IV	DNA topoisomerase IV, B subunit	DNA gyrase subunit B	DNA topoisomerase II (N-region) domain protein	DNA topoisomerase type IIA subunit B region 2 domain protein	DNA topoisomerase type IIA subunit B region 2 domain protein	DNA topoisomerase type IIA subunit B region 2 domain protein	DNA topoisomerase type IIA subunit B region 2 domain protein	DNA gyrase subunit B	DNA topoisomerase type IIA subunit B region 2 domain protein	
CHLTR00680	Glutamyl-tRNA reductase	glutamyl tRNA reductase EC 1.2.1.-	Glutamyl-tRNA reductase	glutamyl-tRNA reductase identified by match to protein family HMM PF00745; match to protein family HMM PF01488; match to protein family HMM PF05201; match to protein family HMM TIGR01035	glutamyl-tRNA reductase identified by match to protein family HMM PF00745; match to protein family HMM PF01488; match to protein family HMM PF05201; match to protein family HMM TIGR01035	Glutamyl-tRNA reductase (EC 1.2.1.-) (GluTR) High confidence in function and specificity	glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Shikimate/quinate 5-dehydrogenase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase	Glutamyl-tRNA reductase PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; KEGG: dde:Dde_2025 glutamyl-tRNA reductase	
CHLTR00681	Uncharacterized protein CT_663	hypothetical protein	hypothetical protein	Type III secretion system chaperone	Type III secretion system chaperone	Type III secretion system chaperone	
CHLTR00682	Adenylate cyclase-like protein	adenylate cyclase	phosphopeptide binding protein	Phosphopeptide binding protein	Phosphopeptide binding protein	Phosphopeptide binding protein	
CHLTR00683	Uncharacterized protein CT_665	hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00684	Uncharacterized protein CT_666	hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00685	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00686	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00687	Yops secretion ATPase	Hrp conserved protein hrcn	Type III secretion component protein SctN	identified by similarity to SP:P26465; match to protein family HMM PF00006; match to protein family HMM TIGR01026 H+-transporting two-sector ATPase, flagellum-specific	Probable type III secretion system ATP synthase	identified by similarity to SP:P23445; match to protein family HMM PF00006; match to protein family HMM TIGR01026 flagellum-specific ATP synthase FliI	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark HrcN	similar to the YscN family of proteins Secretion system apparatus SsaN	similar to Salmonella typhi CT18 putative type III secretion ATP synthase putative type III secretion ATP synthase	Similar to Chlamydia pneumoniae YopN or YscN or cpn0707 or cp0039 SWALL:Q9Z7J8 (EMBL:AE001652) (442 aa) fasta scores: E(): 5.8e-152, 95.24% id in 442 aa, and to Yersinia enterocolitica probable ATP synthase YscN SWALL:YSCN_YEREN (SWALL:P40290) (439 aa) fasta scores: E(): 8.4e-81, 55.45% id in 422 aa and to Bacillus subtilis flagellum-specific ATP synthase FliI SWALL:FLII_BACSU (SWALL:P23445) (440 aa) fasta scores: E(): 1.5e-75, 52.39% id in 418 aa. putative type III secretion or flagellar-type ATP synthase	HrcN protein	Flagellum-specific ATP synthase	Probable ATP synthase yscN	Flagellum-specific ATP synthase	identified by similarity to SP:P23445; match to protein family HMM PF00006; match to protein family HMM TIGR01026 flagellum-specific ATP synthase FliI	COG1157 flagellum-specific ATP synthase	Probable secretion system apparatus ATP synthase ssaN	HrpB6 protein	flagellum-specific ATP synthase	ATPase FliI/YscN	ATPase FliI/YscN	flagellar protein export ATPase FliI identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR02545	type III secretory flagellar biosynthesis ATP synthase EC 3.6.3.14	HrcN protein	flagellum-specific ATP synthase	Yop secretion ATP synthase	Type III secretion component protein SctN	HrcN protein HrcN protein (HrpB6 protein) identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	Flagellum-specific ATP synthase	
CHLTR00688	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00689	Uncharacterized protein CT_671	hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00690	Flagellar Motor Switch Domain/YscQ family	type III secretion flagellar motor switch domain	SctQ type III secreted protein	Type III secretion component, basal body	Type III secretion component, basal body	Type III secretion component, basal body	
CHLTR00691	S/T Protein Kinase	serine/threonine protein kinase EC 2.7.1.-	putative serine/threonine-protein kinase PAR-1	Putative serine/threonine-protein kinase (TTSS effector protein) precursor	Putative serine/threonine-protein kinase (TTSS effector protein) precursor	Putative serine/threonine-protein kinase	
CHLTR00692	Probable Yop proteins translocation protein C/general secretion pathway protein	Probable general secretory pathway d transmembrane protein	type II protein secretion LspD	conserved gene type II protein secretion LspD	type II protein secretion LspD	Probable type II secretion system protein	Similar to many OutD, general secretion protein, orthologues that are thought to be involved in the recognition of secreted proteins: Chlamydia trachomatis putative general secretion protein D or ct674 SWALL:O84681 (EMBL:AE001337) (921 aa) fasta scores: E(): 0, 73.52% id in 933 aa. Also similar to several Type III secretion system proteins. putative general secretion protein	Type II secretion system protein D	General secretion pathway protein D	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pt : putative transporter putative general secretion pathway protein	general secretion pathway protein D	Type II secretory pathway, component PulD	general secretory pathway protein D	type II secretion system protein D	identified by similarity to SP:P31780; similarity to GP:4139236; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517 general secretion pathway protein D	identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517 general secretion pathway protein GspD	identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517 general secretion pathway protein D	type II and III secretion system protein:NolW-like	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 7789814; Product type t : transporter General secretion pathway protein D	Type II and III secretion system protein	type II and III secretion system protein:NolW-like	general secretion pathway protein D	type II and III secretion system protein	type II and III secretion system protein	type II and III secretion system protein	type II and III secretion system protein	Type II secretory pathway, component PulD COG1450	type III secretion general secretion pathway protein D	Type II secretion system gspD precursor	
CHLTR00693	Putative ATP:guanido phosphotransferase CT_675	modulator of CtsR repression McsB	Similar to Chlamydia pneumoniae hypothetical ATP:guanido phosphotransferase cpn0701 or cp0045 or cpj0701 SWALL:Y701_CHLPN (SWALL:Q9Z7K4) (358 aa) fasta scores: E(): 2.6e-98, 66.76% id in 358 aa, and to Chlamydia muridarum hypothetical ATP:guanido phosphotransferase Tc0046 SWALL:Y046_CHLMU (SWALL:Q9PLP9) (356 aa) fasta scores: E(): 3.5e-76, 54.39% id in 353 aa, and to Chlamydia trachomatis hypothetical ATP:guanido phosphotransferase Ct675 SWALL:Y675_CHLTR (SWALL:O84682) (356 aa) fasta scores: E(): 1.4e-73, 54.1% id in 353 aa hypothetical ATP:guanido phosphotransferase	identified by similarity to SP:P37570; match to protein family HMM PF00217 ATP:guanido phosphotransferase family protein	Arginine kinase	ATP: guanido phosphotransferase family; probable arginine kinase	identified by match to protein family HMM PF00217 ATP:guanido phosphotransferase domain protein	ATP:guanido phosphotransferase	ATP:guanido phosphotransferase domain protein identified by match to protein family HMM PF00217	ATP:guanido phosphotransferase	hypothetical protein	ATP:guanido phosphotransferase domain protein identified by match to protein family HMM PF00217	Hypothetical ATP:guanido phosphotransferase identified by match to protein family HMM PF00217	arginine kinase	ATP:guanido phosphotransferase	putative ATP:guanido phosphotransferase	Complete genome	ATP:guanido phosphotransferase	Arginine kinase	arginine kinase	ATP:guanido phosphotransferase	ATP:guanido phosphotransferase	Putative ATP:guanido phosphotransferase	McsB	ATP:guanido phosphotransferase	ATP:guanido phosphotransferase domain protein	ATP:guanido phosphotransferase	ATP:guanido phosphotransferase	ATP:guanido phosphotransferase-related protein	
CHLTR00694	Putative uncharacterized protein	conserved hypothetical protein	ClpC ATPase	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00695	Ribosome-recycling factor	Ribosome-recycling factor	Ribosome-recycling factor	Ribosome-recycling factor	Ribosome recycling factor	ribosome releasing factor	Ribosome-recycling factor	Ribosome-recycling factor	Ribosome recycling factor	conserved gene ribosome recycling factor	Ribosome recycling factor	Ribosome-recycling factor	identified by match to protein family HMM PF01765; match to protein family HMM TIGR00496 ribosome recycling factor	Ribosome-recycling factor	RRF Ribosome Recycling Factor	ribosome recycling factor	identified by similarity to SP:P16174; match to protein family HMM PF01765; match to protein family HMM TIGR00496 ribosome recycling factor	Ribosome-recycling factor	ribosome recycling factor	Ribosome-recycling factor	Ribosome recycling factor	Ribosome recycling factor	Ribosome-recycling factor	identified by similarity to SP:P16174; match to protein family HMM PF01765; match to protein family HMM TIGR00496 ribosome recycling factor	Ribosome-recycling factor	Ribosome recycling factor	Ribosome-recycling factor	Mb2906c, frr, len: 185 aa. Equivalent to Rv2882c, len: 185 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 185 aa overlap). Probable frr, ribosome recycling factor, equivalent to O33046|RRF_MYCLE|FRR|ML1590|MLCB250.76 RIBOSOME RECYCLING FACTOR from Mycobacterium leprae (185 aa), FASTA scores: opt: 1063, E(): 2.6e-60, (90.8% identity in 185 aa overlap). Also highly similar to others e.g.  O86770|RRF_STRCO|FRR|SC6A9.40c from Streptomyces coelicolor (185 aa), FASTA scores: opt: 783, E(): 1.5e-42, (63.25% identity in 185 aa overlap); P81101|RRF_BACSU|FRR from Bacillus subtilis (184 aa), FASTA scores: opt: 640, E(): 1.7e-33, (51.65% identity in 182 aa overlap); P16174|RRF_ECOLI|FRR|B0172|Z0183|ECS0174 from Escherichia coli strains K12 and O157:H7 (185 aa), FASTA scores: opt: 473, E(): 1.4e-23, (40.2% identity in 184 aa overlap); etc. BELONGS TO THE RRF FAMILY. RIBOSOME RECYCLING FACTOR FRR (RIBOSOME RELEASING FACTOR) (RRF)	InterProMatches:IPR002661; Biological Process: protein biosynthesis (GO:0006412) ribosome recycling factor	
CHLTR00696	Uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	PyrH	uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase (UK) (Uridine monophosphate kinase)	conserved gene uridylate kinase	Uridylate kinase (UK) (Uridine monophosphate kinase)	Uridylate kinase	identified by similarity to EGAD:108466; match to protein family HMM PF00696 uridylate kinase	Uridylate kinase	Uridylate kinase	uridylate kinase	identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075 uridylate kinase	Uridylate kinase	uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	identified by similarity to SP:O31749; match to protein family HMM PF00696; match to protein family HMM TIGR02075 uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	Mb2907c, pyrH, len: 261 aa. Equivalent to Rv2883c, len: 261 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 261 aa overlap). Probable pyrH, uridylate kinase (EC 2.7.4.-), equivalent to O33045|PYRH_MYCLE|ML1591|MLCB250.75 URIDYLATE KINASE from Mycobacterium leprae (279 aa), FASTA scores: opt: 1437, E(): 3.8e-81, (85.05% identity in 274 aa overlap). Also highly similar to others e.g. O69913|PYRH from Streptomyces coelicolor (253 aa), FASTA scores: opt: 1086, E(): 1.4e-59, (68.9% identity in 251 aa overlap); P74457|PYRH_SYNY3|SLL0144 from Synechocystis sp. strain PCC 6803 (260 aa), FASTA scores: opt: 851, E(): 4.1e-45, (55.85% identity in 231 aa overlap); P29464|PYRH_ECOLI|SMBA|B0171|Z0182|ECS0173 from strains K12 and O157:H7 (240 aa), FASTA scores: opt: 666, E(): 1.1e-35, (45.7% identity in 232 aa overlap); etc. PROBABLE URIDYLATE KINASE PYRH (UK) (URIDINE MONOPHOSPHATE KINASE) (UMP KINASE)	
CHLTR00697	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	elongation factor ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts (EF-Ts)	conserved gene translation elongation factor Ts (EF-Ts)	Elongation factor Ts (EF-Ts)	Elongation factor Ts	identified by match to protein family HMM PF00627; match to protein family HMM PF00889; match to protein family HMM PF02094; match to protein family HMM TIGR00116 translation elongation factor Ts	Elongation factor Ts	elongation factor EF-Ts	identified by similarity to SP:P02997; match to protein family HMM PF00627; match to protein family HMM PF00889; match to protein family HMM TIGR00116 translation elongation factor Ts	Elongation factor Ts	translation elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	identified by similarity to SP:P80715; match to protein family HMM PF00627; match to protein family HMM PF00889; match to protein family HMM TIGR00116 translation elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Mb2913c, tsf, len: 271 aa. Equivalent to Rv2889c, len: 271 aa, from Mycobacterium tuberculosis strain H37Rv, (99.6% identity in 271 aa overlap). Probable tsf, elongation factor, equivalent to O33039|EFTS_MYCLE|TSF|ML1597|MLCB250.64 ELONGATION FACTOR from Mycobacterium leprae (276 aa), FASTA scores: opt: 1430, E(): 1.9e-80, (83.7% identity in 276 aa overlap).  Also highly similar to others e.g. Q9X5Z9|EFTS_STRRA|TSF from Streptomyces ramocissimus (278 aa), FASTA scores: opt: 928, E(): 1.1e-49, (57.05% identity in 277 aa overlap); O31213|EFTS_STRCO|TSF|SC2E1.42 from Streptomyces coelicolor (278 aa), FASTA scores: opt: 927, E(): 1.3e-49, (56.3% identity in 277 aa overlap); P80700|EFTS_BACSU|TSF from Bacillus subtilis (292 aa), FASTA scores: opt: 650, E(): 1.3e-32, (43.85% identity in 276 aa overlap); etc.  Contains PS01127 Elongation factor Ts signature 2. BELONGS TO THE EF-TS FAMILY. PROBABLE ELONGATION FACTOR TSF (EF-TS)	InterProMatches:IPR001816; Molecular Function: translation elongation factor activity (GO:0003746), Biological Process: translational elongation (GO:0006414) elongation factor Ts	translation elongation factor Ts	
CHLTR00698	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	RpsB	30s ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	conserved gene 30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011 ribosomal protein S2	30S ribosomal protein S2	SSU ribosomal protein S2P	30S ribosomal protein S2	identified by similarity to SP:P02351; match to protein family HMM PF00318; match to protein family HMM TIGR01011 ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	identified by similarity to SP:P21464; match to protein family HMM PF00318; match to protein family HMM TIGR01011 ribosomal protein S2	30S ribosomal protein S2	Ribosomal protein S2	30S ribosomal protein S2	Mb2914c, rpsB, len: 287 aa. Equivalent to Rv2890c, len: 287 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 287 aa overlap). Probable rpsB, 30s ribosomal protein s2, equivalent to O33038|RS2_MYCLE|RPSB|ML1598|MLCB250.63 30S RIBOSOMAL PROTEIN S2 from Mycobacterium leprae (277 aa), FASTA scores: opt: 1593, E(): 2.3e-93, (91.5% identity in 270 aa overlap). Also highly similar to others e.g.  O31212|RS2_STRCO|RPSB|SC2E1.41 from Streptomyces coelicolor (310 aa), FASTA scores: opt: 1302, E(): 6.1e-75, (70.6% identity in 289 aa overlap); Q9KA63|RPSB|BH2427 from Bacillus halodurans (244 aa), FASTA scores: opt: 991, E(): 2.3e-55, (59.6% identity in 255 aa overlap); P21464|RS2_BACSU|RPSB from Bacillus subtilis (245 aa), FASTA scores: opt: 959, E(): 2.4e-53, (58.55% identity in 246 aa overlap); etc. Contains PS00962 Ribosomal protein S2 signature 1. BELONGS TO THE S2P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 30S RIBOSOMAL PROTEIN S2 RPSB	InterProMatches:IPR005706; Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: protein biosynthesis (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935) ribosomal protein S2	30S ribosomal protein S2	
CHLTR00699	Major outer membrane porin, serovar D	outer membrane protein OmpA major outer membrane protein MOMP	major outer membrane protein	Major outer membrane protein	Major outer membrane protein	Major outer membrane protein	
CHLTR00700	PBP2-transglycolase/transpeptidase	cell division related penicillin-binding protein	penicillin-binding protein	Penicillin-binding protein	Penicillin-binding protein	Penicillin-binding protein	
CHLTR00701	TPR-motif protein	hypothetical protein	O-linked GlcNAc transferase protein	Similar to Chlamydia pneumoniae tpr repeats-ct683 hypothetical protein cpn0693 or cpj0693 or cp0053 SWALL:Q9Z7L1 (EMBL:AE001651) (339 aa) fasta scores: E(): 1.4e-115, 79.16% id in 336 aa, and to Chlamydia muridarum type III secretion chaperone, putative tc0055 SWALL:Q9PLP4 (EMBL:AE002273) (335 aa) fasta scores: E(): 1.3e-112, 77.67% id in 327 aa conserved hypothetical protein	similar to BRA0964, TPR domain protein TPR domain protein	Hypothetical protein	conserved TPR domain protein	, predicted protein, len = 496 aa, probably cDNA flj90840 fis, clone y79aa1002334, weakly similar to glucoserepression mediator protein; predicted pI = 6.5024; good similarity to BAC11547, cDNA flj90840 fis, clone y79aa1002334, weakly similar to glucoserepression mediator protein (519 aa, Homo sapiens, EMBL: AK075321, BAC11547); Fasta scores: E():6.9e-59, 42.526% identity (43.307% ungapped) in 388 aa overlap, (aa 44-430 of , aa 15-396 of BAC11547) hypothetical protein, conserved	Significant similarity to Bacteroides thetaiotaomicron TPR-domain containing protein BT3937 SWALL:Q8A0T4 (EMBL:AE016942) (320 aa) fasta scores: E(): 5.1e-88, 75% id in 320 aa, and to Porphyromonas gingivalis W83 TPR domain protein PG1212 SWALL:AAQ66302 (EMBL:AE017176) (337 aa) fasta scores: E(): 8.3e-12, 27.04% id in 244 aa conserved hypothetical protein	Similar to O-linked GlcNAc transferase TPR	RNA-binding region RNP-1 (RNA recognition motif):TPR repeat	O-linked N-acetylglucosamine transferase	TPR repeat protein identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721	Tetratricopeptide TPR_4	tetratricopeptide repeat protein identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721	conserved hypothetical protein related to flp pilus assembly protein PilF; cd00189	TPR repeat	Tetratricopeptide repeat-containing protein	putative TPR repeat family protein similarity:fasta; with=UniProt:Q8U8M7_AGRT5 (EMBL:AE009337); Agrobacterium tumefaciens (strain C58/ATCC 33970).; O-linked GlcNAc transferase. O-linked GlcNAc transferase.; length=298; id 70.922; 282 aa overlap; query 9-288; subject 16-297	conserved hypothetical protein	TPR repeat	probable O-linked GlcNAc transferase protein similar to Atu4063 [Agrobacterium tumefaciens str.  C58] Similar to swissprot:Q8U8M7 Putative location:bacterial inner membrane Psort-Score: 0.2253; go_function: transferase activity [goid 0016740]	Tetratricopeptide TPR_2 PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2 SMART: Tetratricopeptide region KEGG: mhu:Mhun_2406 tetratricopeptide TPR_2	Tetratricopeptide TPR_2	tetratricopeptide repeat protein identified by match to protein family HMM PF00515; match to protein family HMM PF07719	Hypothetical protein	tetratricopeptide repeat protein identified by match to protein family HMM PF00515; match to protein family HMM PF07719	tetratricopeptide repeat family protein	TPR repeat protein	
CHLTR00702	ABC Transporter	Uncharacterized protein family UPF0051	ABC-type transport system involved in Fe-S cluster assembly, permease component	UPF0051 protein SAV0846	YnhE protein	Putative uncharacterized protein	SufB protein	Similar to ABC transporter, permease component hypothetical protein	conserved gene ABC transporter, permease	Similar to ABC transporter, permease component hypothetical protein	ABC transporter component, iron regulated	identified by similarity to OMNI:SA0918; match to protein family HMM PF01458; match to protein family HMM TIGR01980 FeS assembly protein SufB	ABC transporter-associated protein	ABC transporter subunit	identified by similarity to SP:P77522; match to protein family HMM PF01458; match to protein family HMM TIGR01980 FeS assembly protein SufB	conserved hypothetical protein	ABC transporter membrane protein	Hypothetical protein SE0610	ABC-type transport system involved in Fe-S cluster assembly permease component	Putative uncharacterized protein	FeS assembly protein SufB	FeS assembly protein SufB	Fe-S cluster assembly ABC transporter	ABC transporter sufB; involved in Fe-S cluster assembly, permease compound	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ABC transporter permease	SufB protein	Putative uncharacterized protein yseF	putative ABC transporter	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	
CHLTR00703	ABC Transporter ATPase	Iron-regulated ABC transporter ATPase subunit SufC	ABC-type transport system involved in Fe-S cluster assembly, ATPase component	ABC transporter ATP-binding protein homologue	YnhD protein	SufC	Probable ATP-dependent transporter SufC	Similar to ABC transporter ATP-binding protein hypothetical protein	ABC transporter, ATP-binding protein	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978 FeS assembly ATPase SufC	ABC transporter ATP-binding protein	ABC transporter ATP-binding protein	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978 FeS assembly ATPase SufC	ABC transporter ATP binding protein	ABC transporter ATP-binding protein	ABC transporter	ABC-type transport system involved in Fe-S cluster assembly ATPase component	Putative uncharacterized protein	FeS assembly ATPase SufC	ABC transporter, ATP-binding protein	Mb1498, -, len: 266 aa. Equivalent to Rv1463, len: 266 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 266 aa overlap). Probable conserved ATP-binding protein ABC transporter, equivalent to Z99125|MLCL536.26c putative ABC transporter ATP-binding protein from Mycobacterium leprae (260 aa), FASTA scores: opt: 1444, E(): 0, (86.0% identity in 267 aa overlap).  Very similar to U38804|PPU38804_55 ATP-DEPENDENT TRANSPORTER YCF16 from PORPHYRA PURPUREA chloroplast (251 aa), FASTA scores: opt: 822, E(): 0, (52.4% identity in 248 aa overlap); and similar to others. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE ATP-BINDING TRANSPORT PROTEIN FAMILY (ABC TRANSPORTERS). PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER	ATP-binding protein involved in Fe-S cluster formation YurY	Fe-S cluster assembly ABC transporter ATP-binding protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ABC transporter ATP-binding protein	SufC protein	ABC transporter ATP-binding protein	IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter putative ABC superfamily (atp_bind) transport protein	similar to Salmonella typhi CT18 putative ABC transport ATP-binding subunit putative ABC transport ATP-binding subunit	Similar to Chlamydia pneumoniae ABC transporter ATPase AbcX or cpn0691 or cp0055 SWALL:Q9Z7L3 (EMBL:AE001651) (256 aa) fasta scores: E(): 2.6e-56, 67.45% id in 255 aa, and to Erwinia chrysanthemi SufC protein SWALL:Q9EXP4 (EMBL:AJ301654) (248 aa) fasta scores: E(): 1.7e-32, 45.71% id in 245 aa ABC transporter ATP-binding protein	
CHLTR00704	ABC Transporter Membrane Protein	SufD protein	Similar to Chlamydia pneumoniae ABC transporter membrane protein cpn0690 or cpj0690 or cp0056 SWALL:Q9Z7L4 (EMBL:AE001651) (415 aa) fasta scores: E(): 4.2e-90, 55.97% id in 402 aa, and to Escherichia coli Sufd protein SWALL:SUFD_ECOLI (SWALL:P77689) (423 aa) fasta scores: E(): 1.9e-10, 26.68% id in 341 aa putative ABC transport protein	Putative uncharacterized protein	FeS assembly protein SufD	FeS assembly protein SufD identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981	FeS assembly protein SufD identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981	FeS assembly protein SufD identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981	conserved hypothetical protein	FeS assembly protein SufD	ABC transporter integral membrane protein	Hypothetical protein	Conserved protein involved in Fe/S cluster assembly	iron-regulated ABC transporter, membrane-spanning permease	Hypothetical protein	ABC transporter-associated protein	Hypothetical protein	Hypothetical protein	Fe-S cluster assembly ABC-type transport system, permease component	FeS assembly protein SufD	FeS assembly protein SufD	FeS assembly protein SufD	FeS assembly protein SufD	Cysteine desulfurase activator SufB	FeS assembly protein SufD	Putative uncharacterized protein	Putative uncharacterized protein	FeS assembly protein SufD	FeS assembly protein SufD	
CHLTR00705	Probable cysteine desulfurase	nitrogen fixation protein class-V pyridoxal-phosphate aminotransferase	Cysteine desulfurase	similar to cysteine desulfurase and to selenocysteine lyase hypothetical protein	conserved gene aminotransferase	similar to cysteine desulfurase and to selenocysteine lyase hypothetical protein	identified by match to protein family HMM PF00266; match to protein family HMM TIGR01979 cysteine desulfurase SufS	Probable cysteine desulfurase	cysteine desulfurase	Probable cysteine desulfurase	Nitrogen fixation protein class-V pyridoxal- phosph	Cysteine desulfurase	InterProMatches:IPR010970 cysteine desulfurase	selenocysteine lyase	Cysteine desulfurase	Similar to Chlamydia pneumoniae probable cysteine desulfurase Csd or cpn0689 or cp0057 SWALL:CSD_CHLPN (SWALL:Q9Z7L5) (406 aa) fasta scores: E(): 5.2e-107, 67.66% id in 402 aa, and to Escherichia coli selenocysteine lyase CsdB or SufS SWALL:CSDB_ECOLI (SWALL:P77444) (406 aa) fasta scores: E(): 2.1e-60, 42.14% id in 401 aa putative cysteine desulfurase	NifS protein	putative cysteine desulfurase or selenocysteine lyase	identified by similarity to SP:Q9K7A0; match to protein family HMM PF00266; match to protein family HMM TIGR01979 cysteine desulfurase, SufD subfamily	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pe : putative enzyme putative cysteine desulfurase 1 (Csd)	Cysteine desulfurase	Probable class-V aminotransferase Conserved hypothetical protein	selenocysteine lyase cysteine desulfhydrase	Selenocysteine lyase/Cysteine desulfurase	aminotransferase, class V, cysteine desulfhydrase	identified by sequence similarity; putative; ORF located using Blastx; COG0520 nitrogen fixation protein	ortholog to Escherichia coli bnum: b1680; MultiFun: Metabolism 1.7.19 selenocysteine lyase	identified by sequence similarity; putative; ORF located using Blastx; COG0520 nitrogen fixation protein	identified by sequence similarity; putative; ORF located using Glimmer; Blastx; COG0520 nitrogen fixation protein NifS	
CHLTR00707	DppF	conserved hypothetical protein:ABC transporter:AAA ATPase ABC peptide transporter, ATPase subunit	ABC transporter of dipeptides	ABC transport ATPase	ABC transporter related PFAM: ABC transporter related SMART: AAA ATPase KEGG: rsp:RSP_3236 ABC peptide transporter, ATPase subunit	Oligopeptide ABC transporter ATP-binding protein	Oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein	ABC transport protein, ATPase component	ABC transport protein, ATPase component	ABC transporter related	Oligopeptide/dipeptide ABC transporter, ATPase subunit	ABC transport protein, ATPase component	Oligopeptide ABC transporter, ATP-binding protein	
CHLTR00706	Probable chromosome-partitioning protein parB	Similar to transcription terminator	Putative chromosome partitioning protein parb	Chromosome partitioning protein, DNA-binding protein	identified by similarity to EGAD:13122; match to protein family HMM PF02195; match to protein family HMM TIGR00180 spoOJ protein	ParB Chromosome partitioning protein	chromosome segregation protein	Probable chromosome-partitioning protein parB	Transcription terminator	identified by similarity to SP:P26497; match to protein family HMM PF02195; match to protein family HMM TIGR00180 chromosome partitioning protein, ParB family	ParA	Chromosome partitioning protein B	Probable chromosome-partitioning protein parB	Mb3948c, parB, len: 344 aa. Equivalent to Rv3917c, len: 344 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 344 aa overlap). Probable parB, chromosome partitioning protein, equivalent to Q50201|PARB_MYCLE|ML2706 PROBABLE CHROMOSOME PARTITIONING PROTEIN from Mycobacterium leprae (333 aa), FASTA scores: opt: 1654, E(): 1.6e-88, (78.6% identity in 332 aa overlap). Also highly similar to to others e.g.  Q9S6U1|STH24.09 PUTATIVE PARTITIONING OR SPORULATION PROTEIN from Streptomyces coelicolor (328 aa), FASTA scores: opt: 966, E(): 9.7e-49, (58.55% identity in 287 aa overlap) (no similarity on N-terminus); Q9PB63|PARB_XYLFA|XF2281 PROBABLE CHROMOSOME PARTITIONING PROTEIN from Xylella fastidiosa (310 aa), FASTA scores: opt: 598, E(): 1.8e-27, (38.65% identity in 326 aa overlap); P31857|PARB_PSEPU PROBABLE CHROMOSOME PARTITIONING PROTEIN from Pseudomonas putida (290 aa), FASTA scores: opt: 573, E(): 4.6e-26, (40.35% identity in 322 aa overlap); etc. Contains probable helix-turn-helix motif at aa 179 to 200 (Score 1150, +3.1 0 SD). BELONGS TO THE PARB FAMILY. Note that previously known as parA. PROBABLE CHROMOSOME PARTITIONING PROTEIN PARB	InterProMatches:IPR004437; Molecular Function: DNA binding (GO:0003677), Biological Process: plasmid partitioning (sensu Bacteria) (GO:0030542) site-specific DNA-binding protein	stage 0 sporulation protein J, antagonist of Soj	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark chromosome partitioning protein	COG1475 Predicted transcriptional regulators chromosome partitioning protein	Chromosome partitioning protein, ParB family	Chromosome partitioning protein	Similar to Chlamydia pneumoniae probable chromosome partitioning protein parB or cpn0684 or cp0062 SWALL:PARB_CHLPN (SWALL:Q9Z7M0) (286 aa) fasta scores: E(): 5.5e-65, 68.72% id in 275 aa. putative chromosome partitioning protein	Transcriptional regulator involved in chromosome partitioning ParB	similar to BR2058, chromosome partitioning protein ParB ParB, chromosome partitioning protein ParB	Putative uncharacterized protein gbs2134	Chromosome partitioning protein	Chromosome partitioning protein, parb	hypothetical protein, similar to transcription terminator	Probable chromosome partitioning protein parB	identified by match to PFAM protein family HMM PF02195 partitioning protein, ParB family	
CHLTR00708	ABC Transport ATPase	Oligopeptide transport system permease protein	ABC transporter ATP-binding protein	InterProMatches:IPR010066 dipeptide ABC transporter (ATP-binding protein)	oligopeptide ABC transporter ATP-binding protein	similar to BRA1100, identical to GB:AF454951_15; hypothetical ABC transporter ATPase D hypothetical ABC transporter ATPase D	Similar to Q8D8A2 Oligopeptide ABC transporter,ATP-binding protein D from Vibrio vulnificus (324 aa). FASTA: opt: 1202 Z-score: 1353.8 E(): 1.6e-67 Smith-Waterman score: 1202; 56.270 identity in 311 aa overlap oligopeptide transporter, subunit D, ABC transporter, ATP-binding protein	ATP/GTP-binding site motif A (P-loop):ABC transporter:AAA ATPase	Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like	Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like	putative oligopeptide ABC transporter,ATP-binding protein	Oligopeptide/dipeptide ABC transporter, ATPase subunit	Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein KEGG: dra:DR1568 peptide transport system ATP-binding protein, ev=1e-175, 88% identity TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like: (9.9e-33) PFAM: ABC transporter related: (7.5e-64) Oligopeptide/dipeptide ABC transporter-like: (9.1e-32) SMART: ATPase: (1.5e-17)	ABC transporter of dipeptides	Oligopeptide/dipeptide ABC transporter, ATP- binding protein-like	Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like	Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein KEGG: gka:GK0814 oligopeptide ABC transporter (ATP-binding protein) TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like SMART: ATPase	oligopeptide ABC transporter	Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein	oligopeptide transporter, subunit D, ABC transporter, ATP-binding protein Similar to Q8D8A2 Oligopeptide ABC transporter,ATP-binding protein D from Vibrio vulnificus (324 aa). FASTA: opt: 1202 Z-score: 1353.8 E(): 1.6e-67 Smith-Waterman score: 1202; 56.270 identity in 311 aa overlap	oligopeptide ABC transporter, ATPase component CAC3629 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727	oligopeptide/dipeptide ABC transporter, ATPase subunit KEGG: bur:Bcep18194_B0118 oligopeptide/dipeptide ABC transporter, ATPase subunit TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein SMART: AAA ATPase	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component	Oligopeptide/dipeptide ABC transporter, ATPase subunit	oligopeptide/dipeptide ABC transporter, ATPase subunit KEGG: bcn:Bcen_5321 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein SMART: AAA ATPase	oligopeptide transport ATP-binding protein OppD identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727	oligopeptide/dipeptide ABC transporter, ATP-binding protein identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727	ABC transport ATPase	Putative oligopeptide ABC transporter	
CHLTR00709	UPF0111 protein CT_691	Similar to conserved hypothetical protein hypothetical protein	conserved gene hypothetical phosphate transport regulator	Similar to conserved hypothetical protein hypothetical protein	Similar to Chlamydia pneumoniae protein cpn0681 or cp0066 or cpj0681 SWALL:Y681_CHLPN (SWALL:Q9Z7M3) (224 aa) fasta scores: E(): 2.2e-70, 77.67% id in 224 aa. conserved hypothetical protein	hypothetical protein	Similar to: HI1603, YG03_HAEIN conserved hypothetical phosphate transport regulator	Transcriptional regulator of Pi transport	identified by match to protein family HMM PF01865; match to protein family HMM TIGR00153 conserved hypothetical protein TIGR00153	conserved hypothetical protein	Hypothetical phosphate transport system regulator PhoU	Evidence 4 : Homologs of previously reported genes of unknown function conserved protein of unknown function	protein of unknown function DUF47	hypothetical protein	Hypothetical protein	Hypothetical protein	Hypothetical protein	Hypothetical protein	Hypothetical protein	Possible phosphate transport regulator	Hypothetical protein	protein of unknown function DUF47 PFAM: protein of unknown function DUF47 KEGG: cbu:CBU_0015 conserved hypothetical protein TIGR00153	conserved hypothetical protein	Hypothetical protein	conserved hypothetical protein identified by match to protein family HMM PF01865; match to protein family HMM TIGR00153	protein of unknown function DUF47 PFAM: protein of unknown function DUF47 KEGG: sfr:Sfri_0565 protein of unknown function DUF47	putative pit accessory protein	Putative phosphate transport regulator	protein of unknown function DUF47 PFAM: protein of unknown function DUF47 KEGG: son:SO3770 conserved hypothetical protein TIGR00153	
CHLTR00710	Putative phosphate permease CT_962	Similar to phosphate permease hypothetical protein	conserved gene phosphate transporter	Similar to phosphate permease hypothetical protein	identified by match to protein family HMM PF01384 phosphate transporter family protein	Phosphate transport permease protein	Similar to Chlamydia pneumoniae putative phosphate permease cpn0680 or cp0067 or cpj0680 SWALL:Y680_CHLPN (SWALL:Q9Z7M4) (426 aa) fasta scores: E(): 3.4e-130, 79.81% id in 426 aa, putative phosphate permease	Phosphate permease	Putative phosphate permease JHP1384	identified by match to protein family HMM PF01384 phosphate transporter family protein	low-affinity inorganic phosphate transporter	Similar to: HI1604, YG04_HAEIN putative phosphate permease	Phosphate/sulphate permeases PitA protein	Phosphate permease	Phosphate permease	identified by match to protein family HMM PF01384 phosphate transporter family protein	putative phosphate permease	Sodium/phosphate symporter	phosphate-repressible phosphate permease, possible	putative phosphate transporter	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type t : transporter putative inorganic phosphate transporter	Citation: Chung,C.C., Hwang,S.P.L., Chang,J., (2003) Appl. Environ. Microbiol. 69:754-759 Phosphate transporter, Pit family	anion permease identified by match to protein family HMM PF01384	transcript_id=ENSOCUT00000015422	phosphate transporter	Phosphate transporter	Phosphate transporter	transcript_id=ENSDNOT00000013902	Phosphate/sulphate Permease COG0306	
CHLTR00711	Phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	phosphoglycerate kinase	conserved gene phosphoglycerate kinase	phosphoglycerate kinase	Phosphoglycerate kinase	identified by similarity to EGAD:109234; match to protein family HMM PF00162 phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	phosphoglycerate kinase	identified by similarity to SP:P50314; match to protein family HMM PF00162 phosphoglycerate kinase	Phosphoglycerate kinase	phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	identified by match to protein family HMM PF00162 phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	Phosphoglycerate kinase	Mb1472, pgk, len: 412 aa. Equivalent to Rv1437, len: 412 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 412 aa overlap). Probable pgk, Phosphoglycerate kinase (EC 2.7.2.3), highly similar to many e.g. PGK_MYCLE|P46712 Mycobacterium leprae (416 aa), FASTA scores: opt: 2153, E(): 0, (80.4% identity in 414 aa overlap). Contains PS00111 Phosphoglycerate kinase signature. BELONGS TO THE PHOSPHOGLYCERATE KINASE FAMILY. PROBABLE PHOSPHOGLYCERATE KINASE PGK	InterProMatches:IPR001576; Molecular Function: phosphoglycerate kinase activity (GO:0004618), Biological Process: glycolysis (GO:0006096) phosphoglycerate kinase	
CHLTR00712	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00713	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00715	Endonuclease III	DNA-(apurinic or apyrimidinic site) lyase endonuclease III	Endonuclease-like protein	DNA-(Apurinic or apyrimidinic site) lyase	identified by similarity to EGAD:24337; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 endonuclease III	Endonuclease III	identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 endonuclease III	Endonuclease III	endonuclease III, DNA repair	Endonuclease-like protein	Endonuclease III	Endonuclease III	InterProMatches:IPR005759; Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity (GO:0003906), Cellular Component: intracellular (GO:0005622), Biological Process: base-excision repair (GO:0006284) endonuclease III	DNA-(apurinic or apyrimidinic site) lyase endonuclease III	Endonuclease III	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark endonuclease III	End3 COG0177 Predicted EndoIII-related endonuclease endonuclease III	Endonuclease III	Endonuclease III	Predicted EndoIII-related endonuclease	Similar to Chlamydia muridarum endonuclease III SWALL:Q9PLN0 (EMBL:AE002274) (210 aa) fasta scores: E(): 1.4e-56, 68.34% id in 199 aa, and to Micrococcus luteus ultraviolet N-glycosylase/ap lyase Pdg SWALL:UVEN_MICLU (SWALL:P46303) (279 aa) fasta scores: E(): 3.2e-18, 39.15% id in 189 aa putative DNA repair protein	Endonuclease III	similar to BR0166, endonuclease III Nth, endonuclease III	Putative uncharacterized protein gbs0515	Endonuclease III	Endonuclease III	endonuclease-like protein	ENDONUCLEASE III	identified by match to PFAM protein family HMM PF00730 endonuclease III	
CHLTR00714	Uncharacterized protein CT_696	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00716	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	ThdF	thiophene and furan oxidation protein	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	Similar to GTPase for tRNA modification trmE hypothetical protein	conserved gene GTP binding protein in thiophene and furan oxidation (GTPase)	Similar to GTPase for tRNA modification trmE hypothetical protein	tRNA modification GTPase mnmE	identified by similarity to EGAD:14211; match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00450; match to protein family HMM TIGR00650 tRNA modification GTPase TrmE	tRNA modification GTPase mnmE	tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase	thiophen and furan oxidation protein	identified by similarity to SP:P25522; match to protein family HMM TIGR00231; match to protein family HMM TIGR00450; match to protein family HMM TIGR00650 tRNA modification GTPase TrmE	tRNA modification GTPase mnmE	thiophene and furan oxidation protein	tRNA modification GTPase mnmE	tRNA modification GTPase trmE	TRNA modification GTPase, TrmE	tRNA modification GTPase mnmE	identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00450; match to protein family HMM TIGR00650 tRNA modification GTPase TrmE	tRNA modification GTPase TrmE	InterProMatches:IPR005289, IPR004520; thiophen and furan oxidation,Molecular Function: GTPase activity (GO:0003924), Biological Process: tRNA modification (GO:0006400) ThdF protein-tRNA modification	tRNA modification GTPase	tRNA modification GTPase mnmE	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark thiophene and furan oxidation protein	
CHLTR00717	Phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase	conserved gene phosphatidylserine decarboxylase	Phosphatidylserine decarboxylase	Phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase proenzyme	InterProMatches:IPR005221 phosphatidylserine decarboxylase Psd	Phosphatidylserine decarboxylase proenzyme	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark phosphatidylserine decarboxylase	phosphatidylserine decarboxylase	similar to Salmonella typhi CT18 phosphatidylserine decarboxylase proenzyme phosphatidylserine decarboxylase proenzyme	Similar to Chlamydia pneumoniae phosphatidylserine decarboxylase proenzyme Psd or PsdD or CPN0839 or CP1030 SWALL:Q9Z767 (EMBL:AE001664) (301 aa) fasta scores: E(): 2.6e-85, 66.89% id in 299 aa, and to Chlamydia muridarum phosphatidylserine decarboxylase proenzyme Psd or TC0072 SWALL:Q9PLM7 (EMBL:AE002274) (301 aa) fasta scores: E(): 7.1e-59, 50.68% id in 294 aa putative phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase	Phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase proenzyme	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme phosphatidylserine decarboxylase	Phosphatidylserine decarboxylase proenzyme	phosphatidylserine decarboxylase	phosphatidylserine decarboxylase alpha chain; phosphatidylserine decarboxylase beta chain; Similar to: HI0160, PSD_HAEIN phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase Psd protein	Phosphatidylserine decarboxylase proenzyme	Similar to PSD_VIBVU (Q8DCV8) Phosphatidylserine decarboxylase proenzyme from Vibrio vulnificus (285 aa).  FASTA: opt: 797 Z-score: 972.5 E(): 2.8e-46 Smith-Waterman score: 797; 45.221 identity in 272 aa overlap phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase	Phosphatidylserine decarboxylase proenzyme	go_component: Golgi membrane [goid 0000139]; go_component: vacuolar membrane (sensu Fungi) [goid 0000329]; go_function: phosphatidylserine decarboxylase activity [goid 0004609]; go_process: phosphatidylcholine biosynthesis [goid 0006656] phosphatidylserine decarboxylase, putative	
CHLTR00718	Putative uncharacterized protein	conserved hypothetical protein	tetratricopeptide repeat family protein	Putative exported protein precursor	Putative exported protein precursor	TPR repeat-containing protein	Putative exported protein	
CHLTR00719	Protein translocase subunit secA	Protein translocase subunit secA	Protein translocase subunit secA 1	Protein translocase subunit secA	Preprotein translocase secA subunit	preprotein translocase subunit	Protein translocase subunit secA	Protein translocase subunit secA	Preprotein translocase, secretion protein SecA subunit	conserved gene preprotein translocase; secretion protein SecA	Preprotein translocase, secretion protein SecA subunit	Protein translocase subunit secA	identified by similarity to EGAD:17570; match to protein family HMM PF00271; match to protein family HMM PF01043; match to protein family HMM PF02810; match to protein family HMM TIGR00963 preprotein translocase, SecA subunit	Protein translocase subunit secA	Protein translocase subunit SecA	preprotein translocase SecA subunit	identified by match to protein family HMM PF00271; match to protein family HMM PF01043; match to protein family HMM PF02810; match to protein family HMM PF07516; match to protein family HMM PF07517; match to protein family HMM TIGR00963 preprotein translocase, SecA subunit	Protein translocase subunit secA	preprotein translocase binding subunit (ATPase)	Protein translocase subunit secA	Preprotein translocase subunit	Preprotein translocase SecA subunit	Protein translocase subunit secA	identified by similarity to SP:P28366; match to protein family HMM PF00271; match to protein family HMM PF01043; match to protein family HMM PF02810; match to protein family HMM TIGR00963 preprotein translocase, SecA subunit	Protein translocase subunit secA 1	Protein translocase subunit secA	Protein translocase subunit secA 1	Mb3268c, secA1, len: 949 aa. Equivalent to Rv3240c, len: 949 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 949 aa overlap). Probable secA1, preprotein translocase subunit, component of secretion apparatus, highly similar to many e.g. P57996|SEA1_MYCLE from Mycobacterium leprae (940 aa), FASTA scores: opt: 5044, E(): 0, (87.5% identity in 849 aa overlap); P95759|SECA_STRGR from Streptomyces griseus (940 aa), FASTA scores: opt: 2612, E(): 1.9e-134, (61.35% identity in 960 aa overlap); P28366|SECA_BACSU|DIV+ from Bacillus subtilis (841 aa), FASTA scores: opt: 1776, E(): 4.9e-89, (48.05% identity in 837 aa overlap); etc. BELONGS TO THE SECA FAMILY. PART OF THE PROKARYOTIC PROTEIN TRANSLOCATION APPARATUS WHICH COMPRISE SECA, SECD|Rv2587c, SECE|Rv0638, SECF|Rv2586c, SECG|Rv1440 AND SECY|Rv0732. Note that previously known as secA. PROBABLE PREPROTEIN TRANSLOCASE SECA1 1 SUBUNIT	InterProMatches:IPR000185; Molecular Function: ATP binding (GO:0005524), Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886) translocase binding subunit (ATPase)	
CHLTR00720	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00721	GTP-binding protein engA	GTP-binding protein engA	GTP-binding protein engA	GTP-binding protein engA	GTP-binding protein engA	putative GTP-binding protein	GTP-binding protein engA	GTP-binding protein engA	Highly similar to GTP-binding proteins hypothetical protein	conserved gene GTP-binding protein EngA	Highly similar to GTP-binding proteins hypothetical protein	GTP-binding protein engA	identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00650 GTP-binding protein, Era/TrmE family	GTP-binding protein engA	GTP-binding protein	GTP-binding protein engA	identified by similarity to SP:P77254; match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00650 GTP-binding protein EngA	GTP-binding protein engA	GTP-binding protein, putative	GTP-binding protein engA	GTP-binding protein engA	Putative uncharacterized protein	GTP-binding protein engA	identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00650 GTPase family protein	GTP-binding protein engA	GTP-binding protein	GTP-binding protein engA	Mb1740, engA, len: 463 aa. Equivalent to Rv1713, len: 463 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 463 aa overlap). Probable engA, GTP-binding protein. Equivalent to Q49884|MLCB1351.01|U00021_5 PROBABLE GTP-BINDING PROTEIN ENGA from Mycobacterium leprae (461 aa), (88.6% identity in 463 aa overlap). And similar to many e.g.  P50743|ENGA_BACSU PROBABLE GTP-BINDING PROTEIN ENGA from Bacillus subtilus (436 aa), FASTA scores: opt: 1077, E(): 0, (40.6% identity in 434 aa overlap). Contains two PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE ERA/TRME FAMILY OF GTP-BINDING PROTEINS. ENGA SUBFAMILY. PROBABLE GTP-BINDING PROTEIN ENGA	GTP-binding protein essential for cell growth; Molecular Function: GTP binding (GO:0005525) GTP-binding protein essential for cell growth	
CHLTR00722	Poly A Polymerase	tRNA nucleotidyltransferase/poly(A) polymerase	Similar to Chlamydia pneumoniae poly A polymerase PcnB_1 or CPN0845 or CP1024 SWALL:Q9Z761 (EMBL:AE001665) (410 aa) fasta scores: E(): 3.9e-138, 81.22% id in 410 aa, and to Bacillus subtilis poly A polymerase PapS SWALL:PAPS_BACSU (SWALL:P42977) (397 aa) fasta scores: E(): 1.2e-29, 34.21% id in 415 aa putative poly A polymerase	similar to BR1553, polyA polymerase family protein polyA polymerase family protein	Poly(A) polymerase	COG0617 PcnB tRNA nucleotidyltransferase/poly(A) polymerase similar to NP_220410.1 poly (A) polymerase	Poly(A) polymerase/t-RNA nucleotidyltransferase	polyA polymerase family protein	tRNA nucleotidyltransferase/poly(A) polymerase	polyA polymerase family protein	Polynucleotide adenylyltransferase	Polynucleotide adenylyltransferase region	possible polyA polymerase	polyA polymerase family protein identified by match to protein family HMM PF01743	polyA polymerase family protein identified by match to protein family HMM PF01743	tRNA nucleotidyltransferase/poly(A) polymerase	Polynucleotide adenylyltransferase region	putative poly(A) polymerase similarity:fasta; with=UniProt:PAPS_BACSU (EMBL:BSJOJC); Bacillus subtilis.; papS; Poly(A) polymerase (EC 2.7.7.19) (PAP).; length=397; id 29.676; 401 aa overlap; query 18-405; subject 11-379 similarity:fasta; with=UniProt:Q92N60_RHIME (EMBL:SME591790); Rhizobium meliloti (Sinorhizobium meliloti).; Hypothetical protein SMc02700.; length=419; id 66.667; 417 aa overlap; query 1-417; subject 1-417	poly (A) polymerase EC 2.7.7.19	poly(A) polymerase protein similar to papS (Atu2250) [Agrobacterium tumefaciens] Similar to swissprot:Q8UD77 Putative location:bacterial cytoplasm Psort-Score: 0.1359; go_function: RNA binding [goid 0003723]; go_process: RNA processing [goid 0006396]	Polynucleotide adenylyltransferase region	TRNA nucleotidyltransferase	PolyA polymerase family protein	Poly(A) polymerase	TRNA nucleotidyltransferase/poly(A) polymerase family protein	Poly A polymerase family COG617 tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]	Polynucleotide adenylyltransferase region PFAM: Polynucleotide adenylyltransferase region KEGG: rpc:RPC_0920 polynucleotide adenylyltransferase region	polyA polymerase tRNA nucleotidyltransferase	TRNA-nucleotidyltransferase	
CHLTR00723	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit ClpX	conserved gene ATP-dependent Clp protease, ATP binding subunit ClpX	ATP-dependent Clp protease ATP-binding subunit ClpX	ATP-dependent Clp protease ATP-binding subunit clpX	identified by similarity to EGAD:37699; match to protein family HMM PF00004; match to protein family HMM TIGR00382 ATP-dependent Clp protease, ATP-binding subunit ClpX	ClpX ATP-dependent clp protease ATP-binding subunit	ATP-dependent Clp protease ATP-binding subunit ClpX	identified by match to protein family HMM PF00004; match to protein family HMM PF06689; match to protein family HMM TIGR00382 ATP-dependent Clp protease, ATP-binding subunit ClpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease subunit X	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	identified by similarity to SP:P50866; match to protein family HMM PF00004; match to protein family HMM TIGR00382 ATP-dependent Clp protease, ATP-binding subunit ClpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease	ATP-dependent Clp protease ATP-binding subunit clpX	Mb2484c, clpX, len: 426 aa. Equivalent to Rv2457c, len: 426 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 426 aa overlap). Probable clpX, ATP-dependent clp protease ATP-binding subunit clpX (EC 3.4.-.-), equivalent to Q9CBY6|CLPX|ML1477 ATP-DEPENDENT CLP PROTEASE ATP-BINDING PROTEIN from Mycobacterium leprae (426 aa), FASTA scores: opt: 2652, E(): 1.4e-142, (96.0% identity in 426 aa overlap). Also highly similar to others e.g. Q9F316|CLPX from Streptomyces coelicolor (428 aa) FASTA scores: opt: 2178, E(): 8.2e-116, (77.8% identity in 428 aa overlap); P50866|CLPX_BACSU from Bacillus subtilis (420 aa), FASTA scores: opt: 1788, E(): 8.5e-94, (63.6% identity in 426 aa overlap); P33138|CLPX_ECOLI from Escherichia coli (423 aa), FASTA scores: opt: 1694, E(): 1.7e-88, (62.4% identity in 415 aa overlap); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE CLPX CHAPERONE FAMILY. PROBABLE ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX	InterProMatches:IPR004487; Molecular Function: chaperone activity (GO:0003754), Molecular Function: ATP binding (GO:0005524), Biological Process: protein transport (GO:0015031) ATP-dependent Clp protease ATP-binding subunit (class III heat-shock protein)	ATP-dependent Clp protease ATP-binding subunit ClpX	ATP-dependent Clp protease ATP-binding subunit clpX	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ATP-dependent Clp protease ATP binding subunit	ClpX ATP-dependent protease	
CHLTR00724	ATP-dependent Clp protease proteolytic subunit 2	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	identified by similarity to EGAD:109994; match to protein family HMM PF00574; match to protein family HMM TIGR00493 ATP-dependent Clp protease, proteolytic subunit ClpP	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease, proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit 2	ATP-dependent Clp protease proteolytic subunit	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease P	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	similar to Salmonella typhi CT18 ATP-dependent clp protease proteolytic subunit ATP-dependent clp protease proteolytic subunit	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri ATP-dependent Clp protease proteolytic subunit ClpP or LopP or B0437 or C0553 or Z0542 or ECS0491 or SF0382 or S0388 SWALL:CLPP_ECOLI (SWALL:P19245) (207 aa) fasta scores: E(): 5.6e-40, 53.12% id in 192 aa, and to Chlamydia muridarum ATP-dependent Clp protease proteolytic subunit 2 ClpP2 or TC0079 SWALL:CLP2_CHLMU (SWALL:Q9PLM0) (203 aa) fasta scores: E(): 2.8e-73, 94.58% id in 203 aa ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolyticsubunit homologue	identified by match to PFAM protein family HMM PF00574 ATP-dependent Clp protease, proteolytic subunit ClpP	ATP-dependent Clp protease proteolytic subunit	Ortholog of S. aureus MRSA252 (BX571856) SAR0823 putative ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolyticsubunit homologue	ATP-dependent Clp protease proteolytic subunit	
CHLTR00725	Trigger factor	Trigger factor	Trigger factor	identified by similarity to SP:P80698; match to protein family HMM PF00254; match to protein family HMM PF05697; match to protein family HMM PF05698; match to protein family HMM TIGR00115 trigger factor	identified by match to protein family HMM PF00254; match to protein family HMM PF05697; match to protein family HMM PF05698; match to protein family HMM TIGR00115 trigger factor	Trigger factor	identified by similarity to SP:P80698; match to protein family HMM PF00254; match to protein family HMM PF05697; match to protein family HMM PF05698; match to protein family HMM TIGR00115 trigger factor	Trigger factor	Trigger factor protein	Trigger factor	Mb2489c, tig, len: 466 aa. Equivalent to Rv2462c, len: 466 aa, from Mycobacterium tuberculosis strain H37Rv, (99.8% identity in 466 aa overlap). Probable tig, trigger factor (TF), a chaperone protein, equivalent to Q9CBY2|ML1481 POSSIBLE MOLECULAR CHAPERONE from Mycobacterium leprae (469 aa), FASTA scores: opt: 2171, E(): 7.2e-113, (70.1% identity in 468 aa overlap). Also similar to oyher trigger factors from several organisms e.g. Q9F314|SCC80.05c from Streptomyces coelicolor (468 aa), FASTA scores: opt: 1224, E(): 1.7e-60, (41.8% identity in 469 aa overlap); Q9K8F3|TIG_BACHD from Bacillus halodurans (431 aa), FASTA scores: opt: 675, E(): 3.6e-30, (28.5% identity in 421 aa overlap); P22257|TIG_ECOLI from Escherichia coli (432 aa), FASTA scores: opt: 493, E(): 4.2e-20, (23.35% identity in 433 aa overlap); etc. BELONGS TO THE FKBP-TYPE PPIASE FAMILY, TIG SUBFAMILY. PROBABLE TRIGGER FACTOR (TF) PROTEIN TIG	trigger factor	Trigger factor	Trigger factor	IPR001179: Peptidylprolyl isomerase, FKBP-type peptidyl-prolyl cis/trans isomerase, trigger factor; a molecular chaperone involved in cell division	similar to Salmonella typhi CT18 trigger factor trigger factor	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri trigger factor Tig or B0436 or Z0541 or ECS0490 or SF0381 or S0387 SWALL:TIG_ECOLI (SWALL:P22257) (432 aa) fasta scores: E(): 2.4e-07, 21.37% id in 435 aa, and to Chlamydia pneumoniae trigger factor Tig or TigA or CPN0848 or CP1021 SWALL:TIG_CHLPN (SWALL:Q9Z758) (442 aa) fasta scores: E(): 4.6e-115, 69.91% id in 442 aa, and to Chlamydia trachomatis trigger factor Tig or CT707 SWALL:TIG_CHLTR (SWALL:O84713) (442 aa) fasta scores: E(): 4.5e-102, 60.68% id in 440 aa trigger factor	Trigger factor	similar to BR0898, identified by sequence similarity to trigger factor Tig, trigger factor	Trigger factor	Trigger factor	Trigger factor	FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase)	identified by similarity to SP:P80698; match to protein family HMM PF00254; match to protein family HMM PF05697; match to protein family HMM PF05698; match to protein family HMM TIGR00115 trigger factor	TF; Similar to: HI0713, TIG_HAEIN trigger factor	FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Tig protein	Similar to Q87YR5 Trigger factor from Pseudomonas syringae (436 aa). FASTA: opt: 1144 Z-score: 1126.0 E(): 7.9e-55 Smith-Waterman score: 1144; 39.041 identity in 438 aa overlap. Molecular chaperone involved in cell division. trigger factor (TF) protein (peptidyl-prolyl cis/trans isomerase)	contains FKBP-type peptidyl-prolyl cis-trans isomerase domain Trigger factor	Trigger factor	
CHLTR00726	SWF/SNF family helicase	swi/snf family helicase 2	SWF/SNF family helicase	Putative helicase	Putative helicase	Putative helicase	
CHLTR00727	Rod Shape Protein-Sugar Kinase	Heat shock protein hsp70:Cell shape determining protein MreB/Mrl	MreB protein	Probable rod shape-determining protein	Rod shape-determining protein MreB	Rod shape-determining protein MreB	conserved gene rod shape determining protein MreB	Rod shape-determining protein MreB	Cell shape determining protein MreB	rod shape-determining protein MreB	identified by similarity to SP:P13519; match to protein family HMM PF06723; match to protein family HMM TIGR00904 rod shape-determining protein MreB	Rod shape-determining protein mreB	Rod shape-determining protein	identified by match to protein family HMM TIGR00904 cell shape-determining protein MreB	InterProMatches:IPR004753 cell-shape determining protein	rod shape-determining protein MreB	Rod shape-determining protein MreB	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark rod shape-determining protein	MreB rod shape-determining protein	Rod shape-determining protein MreB	IPR001023: Heat shock protein Hsp70; IPR004753: Cell shape determining protein MreB/Mrl Rod shape-determining protein mreB	Actin-like ATPase involved in cell morphogenesis, MreB	similar to Salmonella typhi CT18 rod shape-determining protein rod shape-determining protein	Similar to Bacillus subtilis rod shape-determining protein MreB SWALL:MREB_BACSU (SWALL:Q01465) (337 aa) fasta scores: E(): 1.4e-64, 55.06% id in 336 aa, and to Escherichia coli, Escherichia coli O6, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri rod shape-determining protein MreB SWALL:MREB_ECOLI (SWALL:P13519) (347 aa) fasta scores: E(): 1e-63, 57.73% id in 336 aa putative rod shape-determining protein	Rod shape-determining protein MreB	Rod shape-determining protein	ROD SHAPE-DETERMINING PROTEIN	Rod shape-determining protein MreB	Rod shape determining protein	
CHLTR00728	Phosphoenolpyruvate carboxykinase	Phosphoenolpyruvate carboxykinase	Phosphoenolpyruvate carboxykinase	Phosphoenolpyruvate carboxykinase	Mb0217, pckA, len: 606 aa. Equivalent to Rv0211, len: 606 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 606 aa overlap). Probable pckA (alternate gene names: pckG and pck1), phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32), equivalent to Z95398|MLCL622_21 PROBABLE PHOSPHOENOLPYRUVATE CARBOXYKINASE from Mycobacterium leprae (609 aa), FASTA score: (86.1% identity in 605 aa overlap). Also highly similar to others e.g. PPCK_NEOFR|P22130 phosphoenolpyruvate carboxykinase [GTP] (608 aa), FASTA scores: opt: 2287, E(): 0, (55.9% identity in 598 aa overlap). Contains PS00505 Phosphoenolpyruvate carboxykinase (GTP) signature. BELONGS TO THE PHOSPHOENOLPYRUVATE CARBOXYKINASE [GTP] FAMILY. PROBABLE PHOSPHOENOLPYRUVATE CARBOXYKINASE [GTP] PCKA (PHOSPHOENOLPYRUVATE CARBOXYLASE) (PEPCK)(PEP CARBOXYKINASE)	Similar to Neocallimastix frontalis phosphoenolpyruvate carboxykinase [GTP] SWALL:PPCK_NEOFR (SWALL:P22130) (608 aa) fasta scores: E(): 3.5e-141, 56.5% id in 600 aa, and to Corynebacterium glutamicum phosphoenolpyruvate carboxykinase [GTP] PckG or Pck or CGL2863 SWALL:PPCK_CORGL (SWALL:Q9AEM1) (610 aa) fasta scores: E(): 4.1e-120, 48.8% id in 586 aa putative phosphoenolpyruvate carboxykinase	phosphoenolpyruvate carboxykinase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme phosphoenolpyruvate carboxykinase [GTP] (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK)	Phosphoenolpyruvate carboxykinase	Phosphoenolpyruvate carboxykinase	Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32) (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK). phosphoenolpyruvate carboxykinase	Phosphoenolpyruvate carboxykinase (GTP)	Phosphoenolpyruvate carboxykinase (GTP)	phosphoenolpyruvate carboxykinase (GTP)	Phosphoenolpyruvate carboxykinase	Phosphoenolpyruvate carboxykinase (GTP)	phosphoenolpyruvate carboxykinase [GTP]	phosphoenolpyruvate carboxykinase 1 (soluble) [Source:HGNC Symbol;Acc:8724]	transcript_id=ENSOCUT00000002836	Phosphoenolpyruvate carboxykinase (GTP)	phosphoenolpyruvate carboxykinase	Phosphoenolpyruvate carboxykinase (GTP)	phosphoenolpyruvate carboxykinase EC 4.1.1.32	Phosphoenolpyruvate carboxykinase	Phosphoenolpyruvate carboxykinase (GTP)	transcript_id=ENSETET00000003394	Phosphoenolpyruvate carboxykinase (GTP)	
CHLTR00729	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00730	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00731	Outer membrane protein B	outer membrane protein ompB	outer membrane protein B	Outer membrane protein B precursor	Outer membrane protein B precursor	Outer membrane protein B	
CHLTR00732	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	GpsA	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	similar to glycerol-3-phosphate dehydrogenase (NAD+) hypothetical protein	conserved gene glycerol-3-phosphate dehydrogenase [NAD(P)+]	similar to glycerol-3-phosphate dehydrogenase (NAD+) hypothetical protein	Glycerol-3-phosphate dehydrogenase	identified by similarity to EGAD:8708; match to protein family HMM PF01210 glycerol-3-phosphate dehydrogenase, [NAD(P)+]	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase [NAD(P)+]	identified by similarity to SP:P37606; match to protein family HMM PF01210; match to protein family HMM PF07479 glycerol-3-phosphate dehydrogenase (NAD(P)+)	Glycerol-3-phosphate dehydrogenase	glycerol-3-phosphate dehydrogenase [NAD(P)+]	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	GLYCEROL-3-PHOSPHATE DEHYDROGENASE	identified by similarity to SP:P46919; match to protein family HMM PF01210 glycerol-3-phosphate dehydrogenase, NAD(P)-dependent	Glycerol-3-phosphate dehydrogenase 1	Glycerol-3-phosphate dehydrogenase	Mb3006c, gpdA2, len: 334 aa. Equivalent to Rv2982c, len: 334 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 334 aa overlap). Probable gpdA2 (alternate gene name: gpsA), glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94), equivalent to Q9CBR9|GPDA_MYCLE GLYCEROL-3-PHOSPHATE DEHYDROGENASE [NAD(P)+] from Mycobacterium leprae (349 aa), FASTA scores: opt: 1686, E(): 1.7e-95, (77.95% identity in 349 aa overlap). Also highly similar to others e.g.  Q9ZBS0|GPDA_STRCO from Streptomyces coelicolor (336 aa), FASTA scores: opt: 1165, E(): 9.8e-64, (56.25% identity in 327 aa overlap); P46919|GPDA_BACSU from Bacillus subtilis (345 aa), FASTA scores: opt: 872, E(): 7.5e-46, (44.9% identity in 325 aa overlap); P37606|GPDA_ECOLI|GPSA|B3608|Z5035|ECS4486. from Escherichia coli strain O157:H7 and K12 (339 aa), FASTA scores: opt: 799, E(): 2.1e-41, (42.9% identity in 331 aa overlap); etc. Also highly similar to O53761|GPD2_MYCTU PROBABLE GLYCEROL-3-PHOSPHATE DEHYDROGENASE from Mycobacterium tuberculosis (341 aa), FASTA scores: opt: 740, E(): 8.4e-38, (40.35% identity in 322 aa overlap).  BELONGS TO THE NAD-DEPENDENT GLYCEROL-3-PHOSPHATE DEHYDROGENASE FAMILY. PROBABLE GLYCEROL-3-PHOSPHATE DEHYDROGENASE [NAD(P)+] GPDA2 (NAD(P)H-DEPENDENT GLYCEROL-3-PHOSPHATE DEHYDROGENASE)	glycerol-3-phosphate dehydrogenase [NAD(P)+]	Glycerol-3-phosphate dehydrogenase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark glycerol-3-phosphate dehydrogenase	GpdA COG0240 Glycerol-3-phosphate dehydrogenase glycerol-3-phosphate dehydrogenase (NAD+)	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	
CHLTR00733	AgX-1 Homolog-UDP-Glucose Pyrophosphorylase	Probable uridylyltransferase SAV2171	identified by match to protein family HMM PF01704 UTP-glucose-1-phosphate uridylyltransferase family protein	UDP-N-acetylglucosamine pyrophosphorylase	Similar to Chlamydia pneumoniae UDP-glucose pyrophosphorylase CPN0856 or CPJ0856 or CP1013 SWALL:Q9Z750 (EMBL:AE001667) (461 aa) fasta scores: E(): 4.1e-167, 85.68% id in 461 aa, and to Homo sapiens UDP-N-acetylhexosamine pyrophosphorylase Uap1 or SpaG2 SWALL:UAP1_HUMAN (SWALL:Q16222) (522 aa) fasta scores: E(): 1.4e-23, 28.47% id in 432 aa putative UDP-N-acetylhexosamine pyrophosphorylase	hypothetical protein, similar to UDP-N-acetylglucosamine pyrophosphorylase	Ortholog of S. aureus MRSA252 (BX571856) SAR2262 putative UTP--glucose-1-phosphate uridylyltransferase	hypothetical protein, similar to UDP-N-acetylglucosamine pyrophosphorylase	, predicted protein, len = 572 aa, possibly udp-n-acetylglucosamine pyrophosphorylase; predicted pI = 5.8730; reasonable similarity to many udp-n-acetylglucosamine pyrophosphorylase proteins in diverse organisms; contains a UTP--glucose-1-phosphate uridylyltransferase pfam domain spanning the whole protein UDP-N-acetylglucosamine pyrophosphorylase, putative	hypothetical protein, similar to UDP-N-acetylglucosamine pyrophosphorylase	Similar to Saccharomyces cerevisiae UDP-N-acetylglucosamine pyrophosphorylase UAP1 SW:UAP1_YEAST (P43123) (477 aa) fasta scores: E(): 3.5e-28, 33.41% id in 407 aa, and to Chlamydia trachomatis AgX-1 homolog-UDP-glucose pyrophosphorylase CT715 TR:O84720 (EMBL:AE001342) (455 aa) fasta scores: E(): 2.6e-26, 30.92% id in 401 aa putative UTP--glucose-1-phosphate uridylyltransferase	identified by match to protein family HMM PF01704 UTP-glucose-1-phosphate uridylyltransferase family protein	similar to gi|27468679|ref|NP_765316.1| [Staphylococcus epidermidis ATCC 12228], percent identity 73 in 395 aa, BLASTP E(): e-167 putative UDP-N-acetylglucosamine pyrophosphorylase	UTP-glucose-1-phosphate uridylyltransferase family protein identified by match to protein family HMM PF01704	conserved hypothetical protein	transcript_id=ENSOCUT00000015582	UDP-N-acetylglucosamine pyrophosphorylase EC 2.7.7.23	UDP-N-acetylglucosamine pyrophosphorylase, putative	transcript_id=ENSOGAT00000016121	transcript_id=ENSTBET00000009266	UDP-N-acetylglucosamine pyrophosphorylase	pseudo UDP-N-acetylglucosamine pyrophosphorylase,putative submitted as non-pseudo	predicted protein go_function: nucleotidyltransferase activity; go_process: metabolism	UDP-N-acetylglucosamine pyrophosphorylase go_function: nucleotidyltransferase activity; go_process: metabolism	UDP-N-acetylglucosamine pyrophosphorylate, putative	Magnaporthe grisea hypothetical protein	Botrytis cinerea hypothetical protein	Lodderomyces elongisporus (LELG_04151.1) UDP-N-acetylglucosamine pyrophosphorylase (translation)	
CHLTR00734	Putative uncharacterized protein	conserved hypothetical protein	hypothetical cytosolic protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00735	Flagellum-specific ATP Synthase	F0F1-type ATP synthase, beta subunit	identified by sequence similarity; putative; ORF located using Blastx; COG0055; TC:3.A.2.1.2 ATP synthase beta chain	identified by sequence similarity; putative; ORF located using Blastx; COG0055 ATP synthase beta chain	type III secretory flagellar biosynthesis ATP synthase EC 3.6.3.14	ATP synthase F1, beta subunit	ATPase FliI/YscN	transcript_id=ENSEEUT00000002354	ATP synthase F1, beta subunit	flagellum-specific ATP synthase	ATP synthase F1, beta subunit KEGG: rfr:Rfer_1161 ATP synthase F1, beta subunit TIGRFAM: ATP synthase F1, beta subunit PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, alpha/beta subunit domain protein SMART: AAA ATPase	Flagellum-specific ATP synthase	Flagellum-specific ATP synthase	ATP synthase beta chain	ATP synthase F1, beta subunit	ATP synthase F1, beta subunit	Alternate F1F0 ATPase, F1 subunit beta	Alternate F1F0 ATPase, F1 subunit beta	Flagellum-specific ATP synthase	
CHLTR00736	Putative uncharacterized protein	type III secretory flagellar biosynthesis	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00737	Flagellar M-Ring Protein	type III secretion flagellar biosynthesis M-ring protein	FliF flagellar M-ring protein	Flagellar M-Ring Protein precursor	Flagellar M-Ring Protein precursor	Flagellar M-Ring Protein	
CHLTR00737	Flagellar M-Ring Protein	type III secretion flagellar biosynthesis M-ring protein	FliF flagellar M-ring protein	Flagellar M-Ring Protein precursor	Flagellar M-Ring Protein precursor	Flagellar M-Ring Protein	
CHLTR00738	NifU-related protein	Similar to Campylobacter jejuni NifU protein homolog CJ0239C SWALL:Q9PIQ5 (EMBL:AL139074) (323 aa) fasta scores: E(): 2.6e-09, 25.16% id in 310 aa, and to Rhodobacter sphaeroides nitrogen fixation protein NifU SWALL:NIFU_RHOSH (SWALL:Q01180) (246 aa) fasta scores: E(): 0.00085, 24.51% id in 204 aa, and to Chlamydia pneumoniae NifU-related protein CPN0861 or CPJ0861 SWALL:Q9Z745 (EMBL:AE001667) (266 aa) fasta scores: E(): 2.3e-70, 64.39% id in 264 aa putative NifU-related protein	NifU-related protein	NifU	NifU family protein identified by match to protein family HMM PF01106; match to protein family HMM PF01592; match to protein family HMM PF04324	Fe-S cluster assembly protein NifU	NifU family protein	NifU-like protein	NifU family protein	NifU family protein	Putative uncharacterized protein	Putative uncharacterized protein	Iron-sulfur cluster assembly protein	NifU family protein	NifU-like protein	Fe-S cluster assembly protein NifU	Nitrogen-fixing NifU domain protein	Putative uncharacterized protein	NifU family protein	
CHLTR00739	NifS-related protein	cysteine desulfurase EC 4.4.1.-	NifS-related protein	Cysteine desulfurase	Cysteine desulfurase	Cysteine desulfurase	
CHLTR00740	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 2	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 2	identified by similarity to EGAD:19342; match to protein family HMM PF00300; match to protein family HMM TIGR01258 phosphoglycerate mutase	Phosphoglycerate mutase	phosphoglycerate mutase	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	Mb0499, gpm1, len: 249 aa. Equivalent to Rv0489, len: 249 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 249 aa overlap). Probable gpm1, phosphoglycerate mutase 1 (EC 5.4.2.1), equivalent to P53531|PMGY_MYCLE PHOSPHOGLYCERATE MUTASE from Mycobacterium leprae (247 aa). Also highly similar to others e.g. PMG1_ECOLI|P31217 (249 aa), FASTA scores: opt: 805, E(): 0, (51.4% identity in 245 aa overlap); etc.  Contains PS00175 Phosphoglycerate mutase family phosphohistidine signature, and PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE PHOSPHOGLYCERATE MUTASE FAMILY. Note that previously known as gpm. PROBABLE PHOSPHOGLYCERATE MUTASE 1 GPM1 (PHOSPHOGLYCEROMUTASE) (PGAM) (BPG-DEPENDENT PGAM)	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark phosphoglycerate mutase	COG0588 Phosphoglycerate mutase 1 phosphoglycerate mutase	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	IPR001345: Phosphoglycerate/bisphosphoglycerate mutase phosphoglyceromutase 1	similar to Salmonella typhi CT18 phosphoglycerate mutase 1 phosphoglycerate mutase 1	Similar to Methanosarcina mazei 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase GpmA or MM2993 SWALL:GPMA_METMA (SWALL:Q8PST3) (241 aa) fasta scores: E(): 2.7e-28, 38.69% id in 230 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase GmpA or Gmp or PgmA or Pgm or B0755 or C0831 or Z0925 or ECS0783 or SF0549 or S0557 SWALL:GPMA_ECOLI (SWALL:P31217) (249 aa) fasta scores: E(): 5.3e-17, 38.55% id in 236 aa putative phosphoglycerate mutase	similar to BRA1052, phosphoglycerate mutase Gpm, phosphoglycerate mutase	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	phosphoglycerate mutase, pgm homolog	identified by match to PFAM protein family HMM PF00300 phosphoglycerate mutase family protein	
CHLTR00741	Pseudouridine synthase	conserved hypothetical protein	ribosomal large subunit pseudouridine synthase B	Pseudouridine synthase	Similar to Thermotoga maritima 16S pseudouridylate synthase TM0264 SWALL:Q9WYA2 (EMBL:AE001708) (239 aa) fasta scores: E(): 1.2e-27, 41.04% id in 229 aa, and to Bacillus subtilis ribosomal large subunit pseudouridine synthase B RluB SWALL:RLUB_BACSU (SWALL:P35159) (229 aa) fasta scores: E(): 2.6e-22, 37.16% id in 226 aa putative 16S pseudouridine synthase	ribosomal large subunit pseudouridine synthase B	Ortholog of S. aureus MRSA252 (BX571856) SAR1569 ribosomal large subunit pseudouridine synthase B	ribosomal large subunit pseudouridine synthase B	putative pseudouridylate synthase specific to ribosomal small subunit	ribosomal large subunit pseudouridine synthase B	16S rRNA uridine-516 pseudouridylate synthase or related enzyme	ribosomal large subunit pseudouridine synthase B	identified by sequence similarity; putative; ORF located using Blastx; COG1187 ribosomal large subunit pseudouridine synthase B	identified by similarity to SP:Q55578; match to protein family HMM PF00849; match to protein family HMM TIGR00093 pseudouridine synthase, RsuA family	Similar to Bacillus subtilis ribosomal large subunit pseudouridine synthase B RluB SW:RLUB_BACSU (P35159) (229 aa) fasta scores: E(): 1.6e-47, 60.444% id in 225 aa, and to Bacillus halodurans pseudouridylate synthase BH1576 TR:Q9KCJ5 (EMBL:AP001512) (242 aa) fasta scores: E(): 2e-48, 60.084% id in 238 aa ribosomal large subunit pseudouridine synthase B	identified by similarity to EGAD:14622; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 pseudouridine synthase	similar to gi|57284635|gb|AAW36729.1| [Staphylococcus aureus subsp. aureus COL], percent identity 86 in 244 aa, BLASTP E(): e-119 ribosomal large subunit pseudouridine synthase B	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; PubMedId : 11720289, 14659742, 14730022; Product type e : enzyme putative ribosomal RNA pseudouridylate synthase	Pseudouridine synthase, Rsu	ribosomal large subunit pseudouridine synthase B, RluB identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093	ribosomal large subunit pseudouridine synthase B	ribosomal large subunit pseudouridine synthase B EC 4.2.1.70	Pseudouridine synthase, Rsu	Pseudouridine synthase, Rsu	16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases	16S rRNA pseudouridylate synthase	Pseudouridine synthase, Rsu	ribosomal large subunit pseudouridine synthase B, putative	Pseudouridine synthase, Rsu	
CHLTR00742	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00743	Biotin Synthetase	biotin synthetase	biotin--acetyl-CoA-carboxylase ligase	biotin operon repressor biotin--[acetyl-CoA-carboxylase] synthetase	Putative biotin-(Acetyl-CoA carboxylase) synthetase	Biotin--acetyl-CoA-carboxylase ligase	Biotin operon repressor	Biotin operon repressor	Biotin--acetyl-CoA-carboxylase ligase	Biotin--acetyl-CoA-carboxylase ligase	Biotin/acetyl-CoA-carboxylase ligase	Biotin--acetyl-CoA-carboxylase ligase	Biotin-[acetyl-CoA-carboxylase] ligase	Biotin-[acetyl-CoA-carboxylase] ligase	Biotin/acetyl-CoA-carboxylase ligase	Biotin/acetyl-CoA-carboxylase ligase	Biotin operon repressor	Putative biotin-[acetyl-CoA-carboxylase] ligase	Biotin/acetyl-CoA-carboxylase ligase	
CHLTR00744	Rod Shape Protein	Cell cycle proteins	Rod shape determining protein RodA	MrdB protein	Rod shape-determining protein RodA	Rod shape-determining protein rodA	conserved gene rod shape determining protein RodA	Rod shape-determining protein rodA	Rod-shape determining protein	identified by match to protein family HMM PF01098 cell division protein, FtsW/RodA/SpoVE family	cell division protein probable rod shape determining protein	identified by similarity to SP:P15035; match to protein family HMM PF01098; match to protein family HMM TIGR02210 rod shape-determining protein MreD	Rod shape determining protein RodA	Bacterial cell division membrane protein	identified by similarity to PIR:C81336; match to protein family HMM PF01098 rod shape-determining protein RodA, putative	cell division protein FtsW	Rod shape-determining membrane protein; cell elongation in e phase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark rod shape-determining protein	IPR001182: Cell cycle protein rod shape-determining membrane protein; cell elongation in e phase	Bacterial cell division membrane protein, FtsW	similar to Salmonella typhi CT18 rod shape-determining protein RodA rod shape-determining protein RodA	Similar to Pseudomonas aeruginosa rod shape-determining protein RodA or PA4002 SWALL:Q9X6V4 (EMBL:AF147448) (367 aa) fasta scores: E(): 1.7e-25, 29.8% id in 359 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri rod shape-determining protein RodA or MrdB or B0634 or Z0780 or ECS0672 or SF0647 or s0669 SWALL:RODA_ECOLI (SWALL:P15035) (370 aa) fasta scores: E(): 7e-25, 28.53% id in 354 aa putative rod shape-determining protein	Bacterial cell division membrane protein FtsW/MrdB/SpoVE	Rod shape-determining protein	hypothetical protein, similar to rod shape determining protein RodA	Rod shape-determining protein rodA	Rod shape-determining protein	Ortholog of S. aureus MRSA252 (BX571856) SAR2171 putative membrane protein	Rod shape-determining protein	
CHLTR00745	Metal Transport P-type ATPase	Lead,cadmium,zinc and mercury transporting ATPase	Heavy metal-transporting ATPase protein	Probable cation-transporting P-type ATPase D	Mb1504, ctpD, len: 657 aa. Equivalent to Rv1469, len: 657 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 657 aa overlap). Probable ctpD, cation-transporting P-type ATPase D (transmembrane protein) (EC 3.6.3.-), highly similar to others e.g.  T35947 probable cation-transporting ATPase from Streptomyces coelicolor (638 aa); NP_442633.1|NC_000911 cation-transporting ATPase (E1-E2 ATPase) from Synechocystis sp. strain PCC 6803 (642 aa), FASTA scores: opt: 1438, E(): 0, (41.9% identity in 592 aa overlap); NP_389268.1|NC_000964 protein similar to heavy metal-transporting ATPase from Bacillus subtilis (637 aa); etc. Also highly similar to others from Mycobacterium tuberculosis e.g. Rv3743c|MTV025.091c|CTPJ (660 aa).  Contains PS00154 E1-E2 ATPases phosphorylation site.  BELONGS TO THE CATION TRANSPORT ATPASES FAMILY (E1-E2 ATPASES), SUBFAMILY IB. PROBABLE CATION TRANSPORTER P-TYPE ATPASE D CTPD	putative cadmium-transporting ATPase	identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525 cadmium-translocating P-type ATPase	ATPase, E1-E2 type:Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:Heavy metal translocating P-type ATPase	Heavy metal translocating P-type ATPase	similar to gi|27466993|ref|NP_763630.1| [Staphylococcus epidermidis ATCC 12228], percent identity 42 in 791 aa, BLASTP E(): 0.0 cadmium resistance protein	COG2217, ZntA, Cation transport ATPase. pfam00122, E1-E2_ATPase. cd00371, HMA, Heavy-metal-associated domain.  pfam00403, HMA, Heavy-metal-associated domain. Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase	Cd/Co/Hg/Pb/Zn-translocating P-type ATPase	Code: P; COG: COG2217 zinc-transporting ATPase	Heavy metal translocating P-type ATPase	Heavy metal translocating P-type ATPase	Cadmium-transporting ATPase	Heavy metal translocating P-type ATPase	Heavy metal translocating P-type ATPase	Lead, cadmium, zinc and mercury transporting ATPase	cadmium translocating P-type ATPase COG2217 Cation transport ATPase	heavy metal translocating P-type ATPase TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein KEGG: bur:Bcep18194_A3304 heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase	heavy metal translocating P-type ATPase TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein KEGG: sru:SRU_0111 cadmium efflux ATPase	lead, cadmium, zinc and mercury transporting ATPase	cation transporter P-type ATPase D ctpD Mapped to H37Rv Rv1469	Probable cation transporter P-type atpase D ctpD	heavy metal translocating P-type ATPase TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein KEGG: nfa:pnf1330 putative cation-transporting ATPase	heavy metal translocating P-type ATPase TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein KEGG: rsp:RSP_1791 heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase	heavy metal translocating P-type ATPase TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC cadmium-translocating P-type ATPase heavy metal translocating P-type ATPase PFAM: Haloacid dehalogenase-like hydrolase Heavy metal transport/detoxification protein E1-E2 ATPase-associated region KEGG: sme:SMc04128 putative heavy metal transporting ATPase protein	Lead, cadmium, zinc and mercury-transporting ATPase	
CHLTR00746	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative integral membrane protein	Putative integral membrane protein	Putative integral membrane protein	
CHLTR00747	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase hypothetical protein	conserved gene seryl tRNA synthetase	Seryl-tRNA synthetase hypothetical protein	identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414 seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	seryl-tRNA synthetase	identified by similarity to SP:P09156; match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414 seryl-tRNA synthetase	Seryl-tRNA synthetase	seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Serine-tRNA ligase	Seryl-tRNA synthetase	identified by similarity to SP:P95689; match to protein family HMM PF00587; match to protein family HMM TIGR00414 seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase (Serine-tRNA ligase) protein	Seryl-tRNA synthetase	Mb3864c, serS, len: 419 aa. Equivalent to Rv3834c, len: 419 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 419 aa overlap). Probable serS, seryl-tRNA synthetase (EC 6.1.1.11), equivalent to Q9CDC1|SERS|ML0082 PUTATIVE SERYL-TRNA SYNTHASE from Mycobacterium leprae (417 aa), FASTA scores: opt: 2361, E(): 8.5e-138, (85.8% identity in 416 aa overlap). Also highly similar many e.g. Q9ZBX1|SYS_STRCO|SERS|SCD78.28c from Streptomyces coelicolor (425 aa), FASTA scores: opt: 1594, E(): 1.2e-90, (59.75% identity in 425 aa overlap); Q9X199|SYS_THEMA|SERS|TM1379 from Thermotoga maritima (425 aa), FASTA scores: opt: 1083, E(): 3.3e-59, (43.3% identity in 425 aa overlap); P37464|SYS_BACSU|SERS from Bacillus subtilis (425 aa), FASTA scores: opt: 1015, E(): 5e-55, (39.3% identity in 425 aa overlap); etc. Contains PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1. BELONGS TO CLASS-II AMINOACYL-TRNA SYNTHETASE FAMILY. SERYL-TRNA SYNTHETASE SERS (SERINE--TRNA LIGASE) (SERRS) (SERINE TRANSLASE)	InterProMatches:IPR002317; Molecular Function: serine-tRNA ligase activity (GO:0004828), Molecular Function: ATP binding (GO:0005524), Biological Process: seryl-tRNA aminoacylation (GO:0006434) seryl-tRNA synthetase	
CHLTR00748	Riboflavin biosynthesis protein ribD	Riboflavin biosynthesis bifunctional RibD	Riboflavin specific deaminase	RibD protein	Probable riboflavin biosynthesis bifunctional ribd : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase oxidoreductase protein	Riboflavin biosynthesis protein	Riboflavin biosynthesis protein RibD	conserved gene riboflavin biosynthesis protein RibD	Riboflavin biosynthesis protein RibD	identified by similarity to EGAD:14315; match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326 riboflavin biosynthesis protein RibD	5-amino-6-(5-phosphoribosylamino)uracil reductase riboflavin biosynthesis protein RibD	identified by similarity to SP:P25539; match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 riboflavin biosynthesis protein RibD	Diaminohydroxyphosphoribosylaminopyrimidine deaminase	Riboflavin-specific deaminase	Riboflavin specific deaminase	Pyrimidine reductase	RibG	5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine deaminase protein	Riboflavin biosynthesis protein ribD	Mb1444, ribG, len: 339 aa. Equivalent to Rv1409, len: 339 aa, from Mycobacterium tuberculosis strain H37Rv, (99.4% identity in 339 aa overlap). Probable ribG (alternate gene name: ribD), bifunctional riboflavin biosynthesis protein, including diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase (EC 3.5.4.26 and 1.1.1.193), similar to many e.g.  RIBD_ECOLI|P25539 riboflavin-specific deaminase from Escherichia coli (367 aa), FASTA scores: E(): 0, (39.8% identity in 364 aa overlap); etc. Contains PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. IN THE N-TERMINAL SECTION; BELONGS TO THE CYTIDINE AND DEOXYCYTIDYLATE DEAMINASES FAMILY. IN THE C-TERMINAL SECTION; BELONGS TO THE HTP REDUCTASE FAMILY. PROBABLE BIFUNCTIONAL riboflavin biosynthesis protein RIBG : Diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase) + 5-amino-6-(5-phosphoribosylamino) uracil reductase (HTP reductase)	InterProMatches:IPR004794, IPR002734; Molecular Function: 5-amino-6-(5-phosphoribosylamino)uracil reductase activity (GO:0008703), Molecular Function: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity (GO:0008835), Biological Process: vitamin B2 biosynthesis (GO:0009231),Molecula riboflavin-specific deaminase	Includes: diaminohydroxyphosphoribosylaminopyrimidi ne deaminase (riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase riboflavin biosynthesis protein RibD	Bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark riboflavin-specific deaminase; 5-amino-6-uracil reductase	Diaminohydroxyphosphoriboxylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase	Riboflavin-specific deaminase	bifunctional protein in pathway of riboflavin synthesis; IPR002125: Cytidine/deoxycytidylate deaminase, zinc-binding region; IPR002734: Bacterial bifunctional deaminase-reductase, C-terminal; IPR004794: Riboflavin biosynthesis protein RibD pyrimidine deaminase/reductase	Pyrimidine deaminase and reductase	similar to Salmonella typhi CT18 riboflavin biosynthesis protein RibD riboflavin biosynthesis protein RibD	
CHLTR00749	Riboflavin biosynthesis protein ribBA	Riboflavin biosynthesis protein ribBA	Riboflavin biosynthesis protein RibA	conserved gene riboflavin biosynthesis protein RibA	Riboflavin biosynthesis protein RibA	GTP cyclohydrolase II	identified by similarity to EGAD:14797; match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	GTP cyclohydrolase II riboflavin biosynthesis protein RibA	Riboflavin biosynthesis protein ribAB	3,4-dihydroxy-2-butanone 4-phosphate synthase	Riboflavin biosynthesis protein ribBA	GTP cyclohydrolase II protein	Riboflavin biosynthesis protein ribBA	Mb1450, ribA2, len: 425 aa. Equivalent to Rv1415, len: 425 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 425 aa overlap). Probable ribA2, Riboflavin biosynthesis protein (EC 3.5.4.25), similar to many e.g. GCH2_BACSU|P17620 from Bacillus subtilis (398 aa), FASTA scores: opt: 1388, E(): 0, (55.4% identity in 399 aa overlap). Also similar to second Mycobacterium tuberculosis gtp cyclohydrolase Rv1940|ribA1 (353 aa). IN THE N-TERMINAL SECTION; BELONGS TO THE DHBP SYNTHASE FAMILY. IN THE C-TERMINAL SECTION; BELONGS TO THE GTP CYCLOHYDROLASE II FAMILY. PROBABLE RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBA2 : GTP cyclohydrolase II + 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase)	InterProMatches:IPR000422, IPR000926; Molecular Function: 3,4 dihydroxy-2-butanone-4-phosphate synthase activity (GO:0008686), Biological Process: vitamin B2 biosynthesis (GO:0009231), Molecular Function: GTP cyclohydrolase II activity (GO:0003935), Biological Process: vitamin B2 biosynthesis GTP cyclohydrolase II and 3,4-dihydroxy-2-butanone 4-phosphate synthase	Includes: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) riboflavin biosynthesis protein RibA	GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4- phosphate synthase	GTP cyclohydrolase II , 3,4-dihydroxy-2-butanone 4-phosphate synthase	Similar to Bacillus subtilis riboflavin biosynthesis protein RibA [includes: GTP cyclohydrolase ii (EC 3.5.4.25); 3,4-dihydroxy-2-butanone 4-phosphate synthase (DhbP synthase)] SWALL:GCH2_BACSU (SWALL:P17620) (398 aa) fasta scores: E(): 1.1e-76, 51.12% id in 399 aa, and to Streptomyces coelicolor 3,4-dihydroxy-2-butanone 4-phosphate synthase RibA or SCO1441 or SC6D7A.04c SWALL:Q9EWJ8 (EMBL:AL939108) (429 aa) fasta scores: E(): 1.4e-87, 55.25% id in 400 aa riboflavin biosynthesis protein RibA [includes: GTP cyclohydrolase ii	Putative uncharacterized protein gbs0769	GTP cyclohydrolase II	riboflavin biosynthesis protein	identified by match to PFAM protein family HMM PF00925 riboflavin biosynthesis protein RibA	Ortholog of S. aureus MRSA252 (BX571856) SAR1851 riboflavin biosynthesis protein	riboflavin biosynthesis protein	Citation: Richter et al. (1993) J. Bacteriol.  175:4045-4051; Richter et al. (1992) J. Bacteriol.  174:4050-4056 possible GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase	Riboflavin biosynthesis; GTP-cyclohydrolase II.	Similar to Bacillus amyloliquefaciens riboflavin biosynthesis protein RibA [includes: GTP cyclohydrolase II 3,4-dihydroxy-2-butanone 4-phosphate synthase (dhbp synthase)] SWALL:GCH2_BACAM (SWALL:P51695) (398 aa) fasta scores: E(): 2e-80, 52.76% id in 398 aa, and to Bacteroides thetaiotaomicron GTP cyclohydrolase II BT2416 SWALL:AAO77523 (EMBL:AE016936) (404 aa) fasta scores: E(): 3.3e-121, 76.48% id in 404 aa, and to Aquifex aeolicus riboflavin biosynthesis protein RibA [includes: GTP cyclohydrolase II 3,4-dihydroxy-2-butanone 4-phosphate synthase (dhbp synthase)] or AQ_350 SWALL:GCH2_AQUAE (SWALL:O66679) (406 aa) fasta scores: E(): 5.8e-88, 56.75% id in 400 aa putative riboflavin biosynthesis protein [includes: GTP cyclohydrolase ii; 3,4-dihydroxy-2-butanone 4-phosphate synthase (dhbp synthase)]	Similar to GCH2_AQUAE Riboflavin biosynthesis protein ribA from Aquiflex aeolicus (406 aa). FASTA: opt: 1135 z-score: 1316.5 E(): 1.8e-65 Smith-Waterman score: 1135; 46.305 identity in 406 aa overlap riboflavin biosynthesis protein ribA/GTP-cyclohydrolase II	
CHLTR00750	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	riboflavin synthase, beta subunit	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	riboflavin synthase beta chain (6,7-dimethyl-8-ribityllumazine synthase)	conserved gene riboflavin synthase, beta subunit	riboflavin synthase beta chain (6,7-dimethyl-8-ribityllumazine synthase)	6,7-dimethyl-8-ribityllumazine synthase	identified by similarity to EGAD:18389; match to protein family HMM PF00885; match to protein family HMM TIGR00114 riboflavin synthase, beta subunit	riboflavin synthase beta subunit	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	identified by match to protein family HMM PF00885; match to protein family HMM TIGR00114 6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	Mb1451, ribH, len: 154 aa. Equivalent to Rv1416, len: 154 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 154 aa overlap). Probable ribH, riboflavin synthase beta chain (EC 2.5.1.9), similar to many e.g. RISB_ECOLI|P25540 Escherichia coli (156 aa), FASTA scores: opt: 330, E(): 1.8e-15, (44.1% identity in 145 aa overlap). Note alternative GTG start possible overlapping the stop codon of Rv1415|MTCY21B4.33. BELONGS TO THE DMRL SYNTHASE FAMILY. PROBABLE RIBOFLAVIN SYNTHASE BETA CHAIN RIBH (6,7-dimethyl-8-ribityllumazine synthase) (DMRL synthase) (Lumazine synthase)	InterProMatches:IPR002180; Molecular Function: riboflavin synthase activity (GO:0004746), Biological Process: vitamin B2 biosynthesis (GO:0009231), Cellular Component: riboflavin synthase complex (GO:0009349) riboflavin synthase (beta subunit)	6,7-dimethyl-8-ribityllumazine synthase riboflavin synthase beta subunit RibH	6,7-dimethyl-8-ribityllumazine synthase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	6,7-dimethyl-8-ribityllumazine synthase	IPR002180: 6,7-dimethyl-8-ribityllumazine synthase riboflavin synthase, beta chain	
CHLTR00751	Putative uncharacterized protein	conserved hypothetical protein	hypothetical membrane associated protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00752	Probable lipoprotein CT_734	hypothetical protein	hypothetical membrane associated protein	Putative lipoprotein precursor	Putative lipoprotein precursor	Putative lipoprotein	
CHLTR00753	D-Ala/Gly Permease	conserved family - putative Na+/alanine symporter hypothetical protein	sodium:alanine symporter family protein identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835	D-alanine/glycine permease	Amino acid carrier protein	sodium/alanine symporter family protein identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835	Na(+)-linked D-alanine glycine permease	Na(+)-linked D-alanine glycine permease	Na(+)-linked D-alanine glycine permease	Amino acid carrier protein	Sodium:alanine symporter family protein	Na(+)-linked D-alanine glycine permease	Sodium:alanine symporter family protein	amino acid carrier protein TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: pmr:PMI2114 sodium:alanine symporter	
CHLTR00754	UPF0098 protein CT_736	phospholipid-binding protein, PBP family	Putative phospholipid-binding protein	conserved gene hypothetical protein	Putative uncharacterized protein lp_0358	Similar to Rickettsia conorii hypothetical protein RC1288 SWALL:Q92G37 (EMBL:AE008675) (154 aa) fasta scores: E(): 2.9e-20, 39.86% id in 148 aa, and to Sulfolobus tokodaii hypothetical protein ST0476 SWALL:Q975D2 (EMBL:AP000982) (149 aa) fasta scores: E(): 5.2e-20, 43.87% id in 155 aa conserved hypothetical protein	Putative uncharacterized protein	universally conserved protein	Putative uncharacterized protein	Phospholipid-binding protein Hypothetical protein	conserved hypothetical protein	Phospholipid-binding protein	identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481 phosphatidylethanolamine-binding protein, putative	YbhB/YbcL	Conserved hypothetical protein	Code: R; COG: COG1881 conserved hypothetical protein	putative phosphatidylethanolamine-binding protein	conserved hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	putative phosphatidylethanolamine-binding protein identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481	YbhB and YbcL	YbhB and YbcL	conserved hypothetical protein	Phosphatidylethanolamine-binding protein PEBP	Phospholipid-binding protein COG1881	conserved hypothetical protein	putative phosphatidylethanolamine-binding protein	YbhB and YbcL	
CHLTR00755	SET Domain protein	SET domain protein	SET domain containing protein	SET domain containing protein	SET domain containing protein	Nuclear protein SET	SET domain containing protein	
CHLTR00756	Metal dependent hydrolase	Probable metal-dependent hydrolase of the beta- lactamase superfamilyIprotein	Hydrolase	identified by match to protein family HMM PF00753 metallo-beta-lactamase family protein YycJ	Zn-dependent hydrolase (beta-lactamase superfamily)	conserved hypothetical protein	Hypothetical protein SE0022	Beta-lactamase-like conserved protein conserved hypothetical protein YycJ	metal-dependent hydrolase	hypothetical protein	Putative uncharacterized protein yeaA	Similar to Thermoanaerobacter tengcongensis metal-dependent hydrolases of the beta-lactamase superfamily I PhnP or TTE2624 SWALL:Q8R705 (EMBL:AE013202) (259 aa) fasta scores: E(): 3.1e-29, 38.39% id in 237 aa, and to Bacillus halodurans hypothetical protein BH4023 SWALL:Q9K5R5 (EMBL:AP001520) (264 aa) fasta scores: E(): 1.8e-27, 36.59% id in 235 aa conserved hypothetical hydrolase	Putative uncharacterized protein gbs0743	conserved hypothetical protein	identified by match to PFAM protein family HMM PF00753 metallo-beta-lactamase superfamily protein	Ortholog of S. aureus MRSA252 (BX571856) SAR0022 metallo-beta-lactamase superfamily protein	conserved hypothetical protein	Putative uncharacterized protein vicX	best blastp match gb|AAK33525.1| (AE006510) conserved hypothetical protein [Streptococcus pyogenes M1 GAS] conserved hypothetical protein	identified by match to protein family HMM PF00753 metallo-beta-lactamase family protein	VicX protein	Similar to Bacteroides thetaiotaomicron putative metallo-beta-lactamase superfamily hydrolase BT0822 SWALL:Q8A9J3 (EMBL:AE016929) (267 aa) fasta scores: E(): 8.5e-97, 87.64% id in 267 aa, and to Bacillus subtilis function unknown YycJ SWALL:Q45611 (EMBL:D78193) (268 aa) fasta scores: E(): 5.1e-28, 33.95% id in 268 aa putative metallo-beta-lactamase superfamily protein	Metallo-beta-lactamase family protein	conserved hypothetical protein	Metal-dependent hydrolase of the beta-lactamase superfamily	metallo-beta-lactamase family protein	hypothetical protein, similar to metal-dependent hydrolases of the beta-lactamase superfamily I	identified by match to protein family HMM PF00753 metallo-beta-lactamase family protein	identified by match to protein family HMM PF00753 metallo-beta-lactamase superfamily protein	
CHLTR00757	DNA translocase ftsK	DNA translocase ftsK	Cell division FtsK/SpoIIIE	cell division related Stage III sporulation protein E	FtsK cell division protein	DNA translocase FtsK	Cell division protein	Cell division protein	Cell divisionFtsK/SpoIIIE	Cell division protein	






CHLTR00758	Probable Na(+)-translocating NADH-quinone reductase subunit F	NqrF; Na(+)-translocating NADH-ubiquinone reductase subunit F	Na+-translocating NADH-ubiquinone oxidoreductase, beta chain	identified by similarity to SP:Q56584; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR01941 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit	Similar to Vibrio alginolyticus Na(+)-translocating NADH-quinone reductase subunit F NqrF or Nqr6 SWALL:NQRF_VIBAL (SWALL:Q56584) (407 aa) fasta scores: E(): 6.9e-29, 41.33% id in 421 aa, and to Vibrio cholerae Na(+)-translocating NADH-quinone reductase subunit F NqrF or VC2290 SWALL:NQRF_VIBCH (SWALL:Q9X4Q8) (408 aa) fasta scores: E(): 3.9e-28, 41.72% id in 417 aa, and to Haemophilus influenzae Na(+)-translocating NADH-quinone reductase subunit F NqrF or HI0171 SWALL:NQRF_HAEIN (SWALL:O05012) (411 aa) fasta scores: E(): 9.3e-28, 40.93% id in 430 aa Na(+)-translocating NADH-quinone reductase subunit F	Na(+)-translocating NADH-quinone reductase subunit F	Putative Na(+)-translocating NADH-ubiquinone reductase subunit F	Na(+)-translocating NADH-quinone reductase subunit F	Na(+)-translocating NADH-quinone reductase subunit F	Na(+)-translocating NQR subunit F; Na(+)-NQR subunit F; NQR complex subunit F; NQR-1 subunit F; Similar to: HI0171, NQRF_HAEIN Na(+)-translocating NADH-quinone reductase subunit F	Similar to Vibrio cholerae Na+-translocating NADH-quinone reductase NqrF or vc2290 SWALL:NQRF_VIBCH (SWALL:Q9X4Q8) (408 aa) fasta scores: E(): 1.5e-38, 50.23% id in 426 aa, and to Bacteroides thetaiotaomicron Na+-translocating NADH-quinone reductase subunit BT1155 SWALL:AAO76262 (EMBL:AE016930) (422 aa) fasta scores: E(): 5.4e-145, 87.64% id in 421 aa, and to Chlamydia pneumoniae probable Na+-translocating NADH-quinone reductase NqrF or Nqr6 or CPN0883 or CP0983 SWALL:NQRF_CHLPN (SWALL:Q9Z723) (431 aa) fasta scores: E(): 1.6e-50, 38.33% id in 433 aa putative Na+-translocating NADH-quinone reductase subunit F	Na+-transporting NADHubiquinone oxidoreductase beta subunit NqrF protein	Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR01941 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit	Na+-translocating NADH-ubiquinone oxidoreductase, subunit F	identified by similarity to GB:AAC34815.1; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 anthranilate 1,2-dioxygenase, ferredoxin reductase subunit, putative	Best Blastp Hit: pir||G81184 Na(+)-translocating NADH-quinone reductase, chain F NMB0564 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225791|gb|AAF40992.1| (AE002412) Na(+)-translocating NADH-quinone reductase, subunit F [Neisseria meningitidis MC58] COG0543 2-Octaprenylphenol hydroxylase and; NqrF putative Na(+)-translocating NADH-ubiquinone reductase subunit F	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 867460, 9490015, 11248188; Product type t : transporter Na(+)-translocating NADH-quinone reductase subunit F (Na(+)-translocating NADH-quinone reductase subunit beta) (Na(+)-translocating NQR subunit F) (Na(+)-NQR subunit F) (NQR complex subunit F)	NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit	NADH:ubiquinone oxidoreductase, subunit F	NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit TIGRFAMsMatches:TIGR01941	Na (+)-translocating NADH-quinone reductase subunit F EC 1.6.5.-	NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit: (1e-294) PFAM: ferredoxin: (4.4e-11) oxidoreductase FAD/NAD(P)-binding: (6.8e-21) Oxidoreductase FAD-binding region: (9.1e-06) KEGG: sil:SPOA0033 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit, ev=0.0, 88% identity	NADH:ubiquinone oxidoreductase, Na(+)- translocating, F subunit	Sodium-translocating NADH-ubiquinone reductase,subunit F	NADH-uniquinone oxidoreductase subunit F precursor	Na+-translocating NADH:quinone oxidoreductase, subunit Nqr6	NADH:ubiquinone oxidoreductase, subunit F	Na-translocating NADH-quinone reductase subunit F	
CHLTR00759	UPF0092 membrane protein CT_741	identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739 preprotein translocase, YajC subunit	preprotein translocase, subunit YajC	YajC	preprotein translocase	YajC protein translocase subunit	Complete genome	Preprotein translocase precursor	Preprotein translocase precursor	Preprotein translocase, YajC subunit	Putative uncharacterized protein	Preprotein translocase, YajC subunit	Preprotein translocase, YajC subunit	Preprotein translocase	Preprotein translocase, YajC subunit	Preprotein translocase, YajC subunit	Preprotein translocase subunit YajC, putative	preprotein translocase, YajC subunit TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: mag:amb2515 preprotein translocase subunit YajC	Preprotein translocase subunit YajC	
CHLTR00760	Uncharacterized RNA methyltransferase CT_742	23S rRNA (uracil-5-)-methyltransferase rumB	S-adenosylmethionine (SAM)-dependent methyltransferase	Similar to Chlorobium tepidum RNA methyltransferase, TrmA family CT0009 SWALL:AAM71257 (EMBL:AE012780) (483 aa) fasta scores: E(): 6.6e-24, 27.51% id in 418 aa, and to Escherichia coli 23S rRNA (uracil-5-)-methyltransferase RumA or B2785 SWALL:RUMA_ECOLI (SWALL:P55135) (432 aa) fasta scores: E(): 1.6e-15, 23.91% id in 393 aa putative RNA methyltransferase	tRNA (uracil-5-)-methyltransferase	identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479 RNA methyltransferase, TrmA family	COG2265 putative RNA methyltransferase	Similar to: HI0958, YBJF_HAEIN hypothetical RNA methyltransferase	Similar to Oceanobacillus iheyensis RNA methyltransferase OB0768 SWALL:Q8ES75 (EMBL:AP004595) (459 aa) fasta scores: E(): 2.7e-38, 33.61% id in 476 aa, and to Bacteroides thetaiotaomicron RNA methyltransferase BT0643 SWALL:Q8AA22 (EMBL:AE016928) (454 aa) fasta scores: E(): 3.2e-167, 91.63% id in 454 aa putative RNA methyltransferase	tRNA (uracil-5-)-methyltransferase	tRNA (Uracil-5-)-methyltransferase	RNA methyltransferase, TrmA family	identified by match to protein family HMM PF05958; match to protein family HMM TIGR02143 tRNA (uracil-5-)-methyltransferase	identified by match to protein family HMM PF05958; match to protein family HMM TIGR02143 tRNA (uracil-5-)-methyltransferase	tRNA (uracil-5-)-methyltransferase	possible hypothetical RNA methyltransferase	Code: J; COG: COG2265 tRNA (uracil-5-)-methyltransferase	RNA methyltransferase, TrmA family	Code: J; COG: COG2265 tRNA (uracil-5-)-methyltransferase	TRM2 tRNA methyltransferase 2 homolog B (S.  cerevisiae) [Source:HGNC Symbol;Acc:25748]	transcript_id=ENSOCUT00000011945	tRNA (uracil-5-)-methyltransferase	tRNA (uracil-5-)-methyltransferase	23S rRNA methyltransferase/RumA	Code: J; COG: COG2265 tRNA (uracil-5-)-methyltransferase	tRNA/rRNA methyltransferase EC 2.1.1.-	23S rRNA methyltransferase RumA	putative hypothetical RNA methyltransferase	tRNA (uracil-5-)-methyltransferase	
CHLTR00761	histone H1-like protein Hc1	histone-like developmental protein	Histone H1--like developmental protein	Histone H1--like developmental protein	Putative histon H1	Histone H1--like developmental protein	
CHLTR00761	histone H1-like protein Hc1	histone-like developmental protein	Histone H1--like developmental protein	Histone H1--like developmental protein	Putative histon H1	Histone H1--like developmental protein	
CHLTR00763	Protoporphyrinogen Oxidase	Protoporphyrinogen oxidase	Mb2696c, hemY, len: 452 aa. Equivalent to Rv2677c, len: 452 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 452 aa overlap). Probable hemY, protoporphyrinogen oxidase (EC 1.3.3.4), equivalent to Q50008|PPOX_MYCLE|HEMY|ML1044 PROTOPORPHYRINOGEN OXIDASE from Mycobacterium leprae (451 aa), FASTA scores: opt: 2211, E(): 8.8e-118, (75.4% identity in 455 aa overlap).  Also similar to others e.g. Q9RV99|DR1130 from Deinococcus radiodurans (462 aa), FASTA scores: opt: 523, E(): 2.7e-22, (29.8% identity in 453 aa overlap); O32434|PPOX_PROFR|HEMY from Propionibacterium freudenreichii shermanii (527 aa), FASTA scores: opt: 344, E(): 4e-12, (32.1% identity in 495 aa overlap); P32397|PPOX_BACSU|HEMY|HEMG from Bacillus subtilis (470 aa), FASTA scores: opt: 305, E(): 5.9e-10, (26.8% identity in 463 aa overlap); etc. BELONGS TO THE PROTOPORPHYRINOGEN OXIDASE FAMILY. COFACTOR: CONTAINS ONE FAD PER HOMODIMER. PROBABLE PROTOPORPHYRINOGEN OXIDASE HEMY (PROTOPORPHYRINOGEN-IX OXIDASE) (PROTOPORPHYRINOGENASE) (PPO)	InterProMatches:IPR004572; late steps of protoheme IX synthesis,Molecular Function: protoporphyrinogen oxidase activity (GO:0004729), Biological Process: porphyrin biosynthesis (GO:0006779) protoporphyrinogen IX and coproporphyrinogen III oxidase	Protoporphyrinogen oxidase	Similar to Aquifex aeolicus protoporphyrinogen oxidase HemG or AQ_2015 SWALL:O67814 (EMBL:AE000768) (436 aa) fasta scores: E(): 3.9e-17, 24.49% id in 445 aa, and to Arabidopsis thaliana protoporphyrinogen oxidase, chloroplast precursor PpoX or AT4G01690 or T15B16.13 SWALL:PPOC_ARATH (SWALL:P55826) (537 aa) fasta scores: E(): 1.7e-07, 25.78% id in 481 aa putative protoporphyrinogen-related protein	identified by match to protein family HMM PF01593; match to protein family HMM TIGR00562 protoporphyrinogen oxidase	Similar to Porphyromonas gingivalis protoporphyrinogen oxidase HemG SWALL:Q8L152 (EMBL:AB074530) (465 aa) fasta scores: E(): 3e-79, 49.44% id in 451 aa, and to Myxococcus xanthus protoporphyrinogen oxidase HemY SWALL:PPOX_MYXXA (SWALL:P56601) (471 aa) fasta scores: E(): 1e-33, 29.23% id in 455 aa, and to Synechococcus elongatus protoporphyrinogen oxidase TLR0374 SWALL:Q8DLV2 (EMBL:AP005370) (467 aa) fasta scores: E(): 1.8e-26, 27.15% id in 464 aa putative protoporphyrinogen oxidase	protoporphyrinogen oxidase	identified by similarity to SP:P32397; match to protein family HMM PF01593; match to protein family HMM TIGR00562 protoporphyrinogen oxidase	Protoporphyrinogen oxidase	Protoporphyrinogen oxidase	protoporphyrinogen oxidase [Source:HGNC Symbol;Acc:9280]	protoporphyrinogen oxidase identified by match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR00562	protoporphyrinogen oxidase	protoporphyrinogen oxidase	protoporphyrinogen oxidase EC 1.3.3.4	transcript_id=ENSETET00000015737	transcript_id=ENSGACT00000005524	Protoporphyrinogen oxidase	transcript_id=ENSEEUT00000000920	protoporphryninogen oxidase (PPO)	transcript_id=ENSOGAT00000010057	transcript_id=ENSSTOT00000006439	protoporphyrinogen oxidase KEGG: mmc:Mmcs_2213 protoporphyrinogen oxidase TIGRFAM: protoporphyrinogen oxidase PFAM: amine oxidase	protoporphyrinogen oxidase KEGG: gme:Gmet_3551 protoporphyrinogen oxidase TIGRFAM: protoporphyrinogen oxidase PFAM: amine oxidase; FAD dependent oxidoreductase	Protoporphyrinogen oxidase (PPO)(EC 1.3.3.4) [Source:UniProtKB/Swiss-Prot;Acc:P50336]	protoporphyrinogen oxidase identified by similarity to SP:P56601; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR00562	protoporphyrinogen oxidase	
CHLTR00762	CHLTR possible phosphoprotein	conserved hypothetical protein	phosphoprotein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00764	Coproporphyrinogen III Oxidase	Probable oxygen-independent coproporphyrinogen III oxidase oxidoreductase protein	Oxygen-independent coproporphyrinogen III oxidase	identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00538 oxygen-independent coproporphyrinogen III oxidase	Oxygen-independent coproporphyrinogen III oxidase	identified by similarity to SP:P32131; match to protein family HMM PF04055; match to protein family HMM TIGR00538 oxygen-independent coproporphyrinogen III oxidase	coproporphyrinogen III oxidase	O2-independent coproporphyrinogen III oxidase	similar to Salmonella typhi CT18 oxygen-independent coproporphyrinogen III oxidase oxygen-independent coproporphyrinogen III oxidase	Similar to Aquifex aeolicus oxygen-independent coproporphyrinogen II HemN or AQ_2124 SWALL:HEMN_AQUAE (SWALL:O67886) (456 aa) fasta scores: E(): 1.9e-71, 42.41% id in 448 aa, and to Escherichia coli oxygen-independent coproporphyrinogen III oxidase HemN or B3867 SWALL:HEMN_ECOLI (SWALL:P32131) (457 aa) fasta scores: E(): 1.6e-59, 37.58% id in 455 aa putative coproporphyrinogen biosynthesis-related protein	Oxygen-independent coproporphyrinogen III oxidase	Oxygen-independent coproporphyrinogen III oxidase	Oxygen-independent coproporphyrinogen III oxidase	Oxygen-independent coproporphyrinogen III oxidase	Oxygen-independent coproporphyrinogen III oxidase	COG0635 oxygen-independent coproporphyrinogen III oxidase	coproporphyrinogen oxidase, anaerobic	Similar to Escherichia coli oxygen-independent coproporphyrinogen III oxidase HemN or B3867 SWALL:HEMN_ECOLI (SWALL:P32131) (457 aa) fasta scores: E(): 5.5e-56, 40% id in 445 aa, and to Aquifex aeolicus oxygen-independent coproporphyrinogen II HemN or AQ_2124 SWALL:HEMN_AQUAE (SWALL:O67886) (456 aa) fasta scores: E(): 1.9e-60, 38.86% id in 440 aa, and to Campylobacter jejuni oxygen-independent coproporphyrinogen III oxidase HemN or CJ0992C SWALL:Q9PNU8 (EMBL:AL139076) (451 aa) fasta scores: E(): 5.7e-58, 36.9% id in 439 aa putative oxygen-independent coproporphyrinogen III oxidase	Coproporphyrinogen III oxidase and related FeS oxidoreductases HemN protein	Oxygen-independent coproporphyrinogen III oxidase	Coproporphyrinogen III oxidase	Oxygen-independent coproporphyrinogen-III oxidase	Oxygen-independent coproporphyrinogen III oxidase	oxygen-independent coproporphyrinogen III oxidase	identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00538 oxygen-independent coproporphyrinogen III oxidase	identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00538 oxygen-independent coproporphyrinogen III oxidase	identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00538 oxygen-independent coproporphyrinogen III oxidase	Oxygen-independent coproporphyrinogen III oxidase HemN	Oxygen-independent coproporphyrinogen III oxidase HemN	
CHLTR00765	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	conserved gene uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	identified by similarity to EGAD:21032; match to protein family HMM PF01208; match to protein family HMM TIGR01464 uroporphyrinogen decarboxylase	uroporphyrinogen decarboxylase	identified by match to protein family HMM PF01208; match to protein family HMM TIGR01464 uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	identified by match to protein family HMM PF01208; match to protein family HMM TIGR01464 uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Mb2697c, hemE, len: 357 aa. Equivalent to Rv2678c, len: 357 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 357 aa overlap). Probable hemE, uroporphyrinogen decarboxylase (EC 4.1.1.37), equivalent to P46809|DCUP_MYCLE|HEME|ML1043 UROPORPHYRINOGEN DECARBOXYLASE from Mycobacterium leprae (357 aa), FASTA scores: opt: 2017, E(): 8.2e-111, (83.75% identity in 357 aa overlap). Also highly similar to many e.g.  O69861|DCUP_STRCO|HEME|SC1C3.19 from Streptomyces coelicolor (355 aa), FASTA scores: opt: 1165, E(): 5.6e-61, (58.15% identity in 349 aa overlap); P32395|DCUP_BACSU|HEME from Bacillus subtilis (353 aa), FASTA scores: opt: 859, E(): 4.5e-43, (44.1% identity in 356 aa overlap); Q9RV96|DCUP_DEIRA|HEME|DR1133 from Deinococcus radiodurans (344 aa), FASTA scores: opt: 850, E(): 1.5e-42, (43.0% identity in 349 aa overlap); etc.  Equivalent to AAK47067 from Mycobacterium tuberculosis strain CDC1551 (372 aa) but shorter 15 aa. Contains PS00907 Uroporphyrinogen decarboxylase signature 2.  BELONGS TO THE UROPORPHYRINOGEN DECARBOXYLASE FAMILY. PUTATIVE UROPORPHYRINOGEN DECARBOXYLASE HEME (UROPORPHYRINOGEN III DECARBOXYLASE) (URO-D) (UPD)	InterProMatches:IPR006361; Molecular Function: uroporphyrinogen decarboxylase activity (GO:0004853), Biological Process: porphyrin biosynthesis (GO:0006779) uroporphyrinogen III decarboxylase	uroporphyrinogen decarboxylase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	IPR000257: Uroporphyrinogen decarboxylase (URO-D) uroporphyrinogen decarboxylase	Uroporphyrinogen-III decarboxylase	similar to Salmonella typhi CT18 uroporphyrinogen decarboxylase uroporphyrinogen decarboxylase	Similar to Aquifex aeolicus uroporphyrinogen decarboxylase HemE or AQ_334 SWALL:DCUP_AQUAE (SWALL:O66667) (338 aa) fasta scores: E(): 5.5e-34, 36.56% id in 320 aa, and to Escherichia coli uroporphyrinogen decarboxylase HemE or B3997 SWALL:DCUP_ECOLI (SWALL:P29680) (354 aa) fasta scores: E(): 4.4e-23, 30.69% id in 329 aa putative uroporphyrinogen decarboxylase	
CHLTR00766	Transcription-Repair Coupling	Transcription-repair-coupling factor	Probable transcription-repair coupling factor protein	Transcription-repair coupling factor	Transcription-repair coupling factor	conserved gene transcription repair coupling factor	Transcription-repair coupling factor	Transcription-repair coupling factor	identified by similarity to EGAD:14131; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580 transcription-repair coupling factor	Transcription-repair coupling factor	transcription-repair coupling factor	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580 transcription-repair coupling factor	Transcription-repair coupling factor	transcription repair coupling factor	Transcription-repair coupling factor	Transcription-repair coupling factor	identified by similarity to SP:P37474; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580 transcription-repair coupling factor	Transcription-repair coupling factor	InterProMatches:IPR004576; promotes strand-specific DNA repair by displacing RNA polymerase stalled at a nucleotide lesion and directing the (A)BC excinuclease to the RNA damage site,Molecular Function: damaged DNA binding (GO:0003684), Biological Process: DNA repair (GO:0006281) transcription-repair coupling factor	transcription-repair coupling factor	TrcF transcriptional repair coupling factor	Transcription-repair coupling factor	IPR001410: DEAD/DEAH box helicase transcription-repair coupling factor	similar to Salmonella typhi CT18 transcription-repair coupling factor (TrcF) transcription-repair coupling factor (TrcF)	Similar to Bacillus subtilis transcription-repair coupling factor Mfd SWALL:MFD_BACSU (SWALL:P37474) (1177 aa) fasta scores: E(): 1.3e-103, 35.97% id in 1109 aa, and to Escherichia coli transcription-repair coupling factor Mfd or B1114 SWALL:MFD_ECOLI (SWALL:P30958) (1148 aa) fasta scores: E(): 1.8e-100, 35.5% id in 1014 aa putative transcription-repair coupling factor	Transcription-repair coupling factor	similar to BRA0579, transcription-repair coupling factor Mfd, transcription-repair coupling factor	Putative uncharacterized protein gbs0008	Transcription-repair coupling factor	
CHLTR00767	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	alanyl tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	alanyl-tRNA synthetase	conserved gene alanyl tRNA synthetase	alanyl-tRNA synthetase	Alanyl-tRNA synthetase	identified by match to protein family HMM PF01411; match to protein family HMM PF02272; match to protein family HMM TIGR00344 alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	alanyl-tRNA synthetase	identified by similarity to SP:P00957; match to protein family HMM PF01411; match to protein family HMM PF02272; match to protein family HMM TIGR00344 alanyl-tRNA synthetase	Alanyl-tRNA synthetase	alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	identified by similarity to SP:P00957; match to protein family HMM PF01411; match to protein family HMM PF02272; match to protein family HMM TIGR00344 alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase protein	Alanyl-tRNA synthetase	Mb2585c, alaS, len: 904 aa. Equivalent to Rv2555c, len: 904 aa, from Mycobacterium tuberculosis strain H37Rv, (99.9% identity in 904 aa overlap). Probable alaS, alanyl-tRNA synthetase (EC 6.1.1.7), equivalent to Q9CCT0|ALAS|ML0512 ALANYL-TRNA SYNTHETASE from Mycobacterium leprae (908 aa), FASTA scores: opt: 5013, E(): 0, (84.65% identity in 907 aa overlap). Also highly similar to many e.g. Q9KXP9|ALAS from Streptomyces coelicolor (890 aa), FASTA scores: opt: 2159, E(): 3.8e-118, (53.45% identity in 907 aa overlap); Q9FFC7 Arabidopsis thaliana (Mouse-ear cress) (954 aa), FASTA scores: opt: 1963, E(): 1.1e-106, (41.1% identity in 925 aa overlap); Q9RS27|DR2300 from Deinococcus radiodurans (890 aa), FASTA scores: opt: 1352, E(): 4.1e-71, (38.05% identity in 915 aa overlap); etc. BELONGS TO CLASS-II AMINOACYL-TRNA SYNTHETASE FAMILY. PROBABLE ALANYL-TRNA SYNTHETASE ALAS (ALANINE--TRNA LIGASE) (ALANINE TRANSLASE) (ALARS)	






CHLTR00769	AMP Nucleosidase	5'-methylthioadenosine phosphorylase	Similar to Bacteroides thetaiotaomicron AMP nucleosidase BT0888 SWALL:AAO75995 (EMBL:AE016929) (258 aa) fasta scores: E(): 5.1e-97, 92.24% id in 258 aa, and to the C-terminal region of Escherichia coli, and Escherichia coli O157:H7 AMP nucleosidase Amn or B1982 or Z3139 or ECS2779 SWALL:AMN_ECOLI (SWALL:P15272) (484 aa) fasta scores: E(): 1.7e-08, 33.16% id in 202 aa putative AMP nucleosidase	AMP nucleosidase	AMP nucleosidase	AMP nucleosidase, putative	AMP nucleosidase	AMP nucleosidase	AMP nucleosidase	Putative AMP nucleosidase	KEGG: ape:APE_2105.1 uridine phosphorylase uridine phosphorylase	Putative AMP nucleosidase	AMP nucleosidase	AMP nucleosidase	AMP nucleosidase	AMP nucleosidase	AMP nucleosidase	AMP nucleosidase	Uridine phosphorylase	AMP nucleosidase	AMP nucleosidase	AMP nucleosidase	AMP nucleosidase	Putative AMP nucleosidase	AMP nucleosidase TIGRFAM: AMP nucleosidase; PFAM: purine or other phosphorylase family 1; KEGG: bba:Bd1233 AMP nucleosidase	AMP nucleosidase	
CHLTR00768	Transketolase	TktA	Transketolase 1	Transketolase	identified by similarity to EGAD:29878; match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232 transketolase	Transketolase	transketolase	transketolase	Transketolase	identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232 transketolase	InterProMatches:IPR005478; Molecular Function: transketolase activity (GO:0004802) transketolase	Transketolase	Similar to Aquifex aeolicus transketolase Tkt or TktA or AQ_1765 SWALL:TKT_AQUAE (SWALL:O67642) (689 aa) fasta scores: E(): 4e-116, 45.3% id in 660 aa, and to Escherichia coli transketolase 2 TktB or B2465 SWALL:TKT2_ECOLI (SWALL:P33570) (667 aa) fasta scores: E(): 2.3e-111, 46.58% id in 659 aa putative transketolase	Transketolase	Putative uncharacterized protein gbs0268	transketolase	Transketolase	identified by match to PFAM protein family HMM PF00456 transketolase	Ortholog of S. aureus MRSA252 (BX571856) SAR1352 putative transketolase	transketolase	Putative transketolase	best blastp match gb|AAK34434.1| (AE006598) putative transketolase [Streptococcus pyogenes M1 GAS] putative transketolase	Putative Transketolase	transketolase	Similar to Mycobacterium tuberculosis transketolase Tkt or Rv1449c or mt1496 or mtcy493.05 SWALL:TKT_MYCTU (SWALL:O06811) (700 aa) fasta scores: E(): 4.7e-157, 59.42% id in 690 aa, and to Saccharomyces cerevisiae transketolase 1 Tkl1 or ypr074c or yp9499.29C SWALL:TKT1_YEAST (SWALL:P23254) (679 aa) fasta scores: E(): 1.2e-97, 43.34% id in 676 aa transketolase	Transketolase (EC 2.2.1.1) (TK).	ortholog to Escherichia coli bnum: b2935; MultiFun: Metabolism 1.1.1.22, 1.7.3, 1.7.33 transketolase	identified by match to protein family HMM TIGR00232 transketolase	bacterial transketolase	
CHLTR00770	Elongation factor P 2	Elongation factor P	Elongation factor P	Elongation factor P	translation elongation factor	Elongation factor P	Elongation factor P	Similar to elongation factor P hypothetical protein	conserved gene translation elongation factor P (EF-P)	Similar to elongation factor P hypothetical protein	Elongation factor P	identified by match to protein family HMM PF01132; match to protein family HMM TIGR00038 translation elongation factor P	EF-P Translation Elongation Factor P	elongation factor P	identified by match to protein family HMM PF01132; match to protein family HMM TIGR00038 translation elongation factor P	Elongation factor P	Elongation factor P	Elongation factor P	Elongation factor P	Elongation factor P	identified by match to protein family HMM PF01132; match to protein family HMM TIGR00038 translation elongation factor P	Elongation factor P	Elongation factor P	Elongation factor P	Mb2563c, efp, len: 187 aa. Equivalent to Rv2534c, len: 187 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 187 aa overlap). Probable efp, elongation factor P, equivalent to Q9CCS0|EFP|ML0522 ELONGATION FACTOR P from Mycobacterium leprae (187 aa), FASTA scores: opt: 1158, E(): 2.1e-67, (94.1% identity in 186 aa overlap). Also highly similar to many e.g.  Q45288|EFP_CORGL from Corynebacterium glutamicum (Brevibacterium flavum) (187 aa), FASTA scores: opt: 843, E(): 3.4e-47, (69.5% identity in 187 aa overlap); Q9KXQ9|EFP from Streptomyces coelicolor (188 aa), FASTA scores: opt: 833, E(): 1.5e-46, (67.0% identity in 188 aa overlap); P49778|EFP_BACSU from Bacillus subtilis (185 aa), FASTA scores: opt: 607, E(): 4.6e-32, (47.8% identity in 182 aa overlap); P33398|EFP_ECOLI|B4147 from Escherichia coli strain K12 (187 aa), FASTA scores: opt: 503, E(): 1.8e-27, (42.3% identity in 182 aa overlap); etc. BELONGS TO THE ELONGATION FACTOR P FAMILY. PROBABLE ELONGATION FACTOR P EFP	InterProMatches:IPR001059; Molecular Function: translation elongation factor activity (GO:0003746), Biological Process: translational elongation (GO:0006414) elongation factor P	translation elongation factor P	Elongation factor P	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark elongation factor P	
CHLTR00771	Putative uncharacterized protein	conserved hypothetical protein	hypothetical cytosolic protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00772	Phosphohydrolase	metallophosphoesterase	metallophosphoesterase	phosphohydrolase	metallophosphoesterase	Metallophosphoesterase	metallophosphoesterase	Phosphohydrolase cytoplasmic protein	Phosphohydrolase cytoplasmic protein	metallophosphoesterase PFAM: metallophosphoesterase KEGG: rpc:RPC_1382 metallophosphoesterase	phosphohydrolase, Icc family	Ser/Thr protein phosphatase family protein	Putative metallo-phosphoesterase	Putative metallo-phosphoesterase	Metallophosphoesterase	Putative phosphohydrolase	Metallophosphoesterase	Putative uncharacterized protein	Putative uncharacterized protein	Phosphohydrolase	Putative metallo-dependent phosphatase	Metallophosphoesterase	Metallophosphoesterase	Metallophosphoesterase	Metallophosphoesterase	Putative uncharacterized protein	
CHLTR00773	HSP60	heat shock protein HSP60 subunit	60 kDa chaperonin GroEL	60 kDa chaperonin GroEL	60 kDa chaperonin GroEL	60 kDa chaperonin GroEL	
CHLTR00774	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase	conserved gene UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	identified by similarity to EGAD:108108; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D- alanyl-D-alanine ligase	UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate--D-alanyl-D-alanine ligase	UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D- alanyl-D-alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	Mb2181c, murF, len: 510 aa. Equivalent to Rv2157c, len: 510 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 510 aa overlap). Probable murF, UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D -alanyl-D-alanyl ligase (EC 6.3.2.15) (UDP-MURNAC-PENTAPEPTIDE SYNTHETASE) also related to other Mycobacterium tuberculosis mur gene products. FASTA best: MURF_ECOLI P11880 (452 aa) opt: 515, E(): 2.6e-24, (31.9% identity in 511 aa overlap) deleted EC number 6.3.2.15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate-D-alanyl-D-alanyl ligase MurF	InterProMatches:IPR005863; Cellular Component: cytoplasm (GO:0005737), Molecular Function: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase activity (GO:0008766) UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase	COG0770 UDP-N-acetylmuramyl pentapeptide synthase d-ala-d-ala adding enzyme	UDP-N-acetylmuramyl pentapeptide synthase	Similar to Bacillus subtilis UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF SWALL:MURF_BACSU (SWALL:P96613) (457 aa) fasta scores: E(): 5.6e-28, 28.35% id in 455 aa, and to Escherichia coli UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF or Mra or B0086 SWALL:MURF_ECOLI (SWALL:P11880) (452 aa) fasta scores: E(): 5.1e-23, 26.62% id in 432 aa putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase	similar to BR1435, UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase MurF, UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	identified by match to PFAM protein family HMM PF01225 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase	UDP-MurNAc-pentapeptide synthetase	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate--D-alanyl-D-alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	
CHLTR00775	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	identified by similarity to OMNI:SA1195; match to protein family HMM PF00953; match to protein family HMM TIGR00445 phospho-N-acetylmuramoyl-pentapeptide- transferase	phospho-N-acetylmuramoyl-pentapeptide- transferase	identified by similarity to SP:P15876; match to protein family HMM PF00953; match to protein family HMM TIGR00445 phospho-N-acetylmuramoyl-pentapeptide- transferase	Phospho-N-acetylmuramoyl-pentapeptide- transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	identified by similarity to SP:P15876; match to protein family HMM PF00953; match to protein family HMM TIGR00445 phospho-N-acetylmuramoyl-pentapeptide- transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	InterProMatches:IPR003524; Molecular Function: phospho-N-acetylmuramoyl-pentapeptide-transferase activity (GO:0008963), Biological Process: peptidoglycan biosynthesis (GO:0009252), Cellular Component: membrane (GO:0016020) phospho-N-acetylmuramoyl-pentapeptide transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark phospho-N-acetylmuramoyl-pentapeptide- transferase	MraY COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase-UDP-N-acetylglucosamine-1-phosphate transferase p-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	IPR003524: Phospho-N-acetylmuramoyl-pentapeptide transferase phospho-N-acetylmuramoyl-pentapeptide transferase	UDP-N-acetylmuramyl pentapeptide phosphotransferase	similar to Salmonella typhi CT18 phospho-N-acetylmuramoyl-pentapeptide- transferase phospho-N-acetylmuramoyl-pentapeptide- transferase	Similar to Shewanella violacea phospho-N-acetylmuramoyl-pentapeptide-transferase MraY SWALL:Q9F1N3 (EMBL:AB052554) (360 aa) fasta scores: E(): 3.2e-31, 37.42% id in 350 aa, and to Pasteurella multocida phospho-N-acetylmuramoyl-pentapeptide-transferase MraY or PM0139 SWALL:MRAY_PASMU (SWALL:P57816) (360 aa) fasta scores: E(): 1.3e-30, 36.46% id in 351 aa, and to Escherichia coli, and Shigella flexneri phospho-N-acetylmuramoyl-pentapeptide-transferase MraY or MurX or B0087 or SF0084 or S0086 SWALL:MRAY_ECOLI (SWALL:P15876) (360 aa) fasta scores: E(): 2.6e-29, 37.42% id in 350 aa putative phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	phospho-N-muramic acid-pentapeptide translocase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	identified by match to PFAM protein family HMM PF00953 phospho-N-acetylmuramoyl-pentapeptide- transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	
CHLTR00776	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	conserved gene UDP-N-muramoylalanine-D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01087 UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01087 UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine-D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	identified by similarity to SP:P14900; match to protein family HMM PF02875; match to protein family HMM TIGR01087 UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	Mb2179c, -, len: 486 aa. Equivalent to Rv2155c, len: 486 aa, from Mycobacterium tuberculosis strain H37Rv, (99.8% identity in 486 aa overlap). Probable murD, UDP-N-acetylmuramoylalanine-D-glutamate ligase (EC 6.3.2.9). FASTA best: MURD_BACSU Q03522 (451 aa) opt: 534, E(): 2.7e-25; (28.8% identity in 483 aa overlap); contains PS01011 Folylpolyglutamate synthase signature 1 UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD	InterProMatches:IPR005762; Cellular Component: cytoplasm (GO:0005737), Molecular Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase activity (GO:0008764), Biological Process: cell wall biosynthesis (sensu Bacteria) (GO:0009273) UDP-N-acetylmuramoylalanyl-D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark UDP-N-acetylmuramoylalanine-D-glutamate ligase	MurD COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase UDP-N-acetylmuramoylalanine-D-glutamate ligase	
CHLTR00777	Muramidase	cell wall binding muramidase	muramidase	Muramidase precursor	Muramidase precursor	Muramidase	
CHLTR00778	Cell Division Protein FtsW	Cell division protein FtsW	cell division protein FtsW	Cell cycle protein	Cell division protein FtsW	cell division related rod shape-determining membrane protein	cell cycle protein PFAM: cell cycle protein KEGG: btk:BT9727_3653 stage V sporulation protein E	cell division protein FtsW	stage V sporulation protein E identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; match to protein family HMM TIGR02615	hypothetical protein similarity to COG0772 Bacterial cell division membrane protein(Evalue: 1E-107)	Cell division protein FtsW precursor	Cell cycle protein, RodA/FtsW/SpoVE family	cell cycle protein PFAM: cell cycle protein KEGG: cte:CT0035 cell division protein, FtsW/RodA/SpoVE family	Cell division protein FtsW	cell cycle protein, FtsW/RodA/SpoVE family	cell division protein FtsW TIGRFAM: cell division protein FtsW PFAM: cell cycle protein KEGG: fra:Francci3_1414 cell cycle protein	FtsW cell division protein	FtsW-like protein FtsW membrane protein function unknown function in cell division	Cell division protein FtsW COG772 Bacterial cell division membrane protein [Cell division and chromosome partitioning]	cell division protein FtsW TIGRFAM: cell division protein FtsW PFAM: cell cycle protein KEGG: mmc:Mmcs_3257 cell division protein FtsW	Bacterial cell division membrane protein	Cell cycle protein precursor	Cell division protein FtsW COG772 Bacterial cell division membrane protein [Cell division and chromosome partitioning]	cell division protein FtsW TIGRFAM: cell division protein FtsW PFAM: cell cycle protein KEGG: mmc:Mmcs_3257 cell division protein FtsW	Cell division protein FtsW	Cell division protein FtsW precursor	Cell division protein FtsW	Cell cycle protein precursor	FtsW	
CHLTR00779	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	identified by match to protein family HMM PF03033; match to protein family HMM PF04101 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, putative	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl-(Pentape p tide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase protein	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	Mb2177c, murG, len: 410 aa. Equivalent to Rv2153c, len: 410 aa, from Mycobacterium tuberculosis strain H37Rv, (99.5% identity in 410 aa overlap). Probable MURG PROTEIN (UPD-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol-N-acetylglucosamine transferase. FASTA score: MURG_BACSU P37585 murg protein (363 aa) opt: 494, E(): 1.1e-20; (27.9% identity in 365 aa overlap) UPD-N-acetylglucosamine-N-acetylmuramyl- (pentapep tide) pyrophosphoryl-undecaprenol-N-acetylglucosamine transferase MurG	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol	UDP-N-acetylglucosamine--N-acetylmuramyl- (Pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase	similar to Salmonella typhi CT18 UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	Similar to Neisseria meningitidis UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase MurG or NMA2062 SWALL:MURG_NEIMA (SWALL:Q9JSZ7) (355 aa) fasta scores: E(): 1.2e-22, 34.54% id in 359 aa, and to Bacillus subtilis UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase MurG SWALL:MURG_BACSU (SWALL:P37585) (363 aa) fasta scores: E(): 1.6e-20, 30.18% id in 371 aa putative UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	similar to BR1431, UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase MurG, UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape ptide)pyrophosphoryl- undecaprenolN-acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl-(Penta pe pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	
CHLTR00780	Bifunctional enzyme murC/ddl	MurC/ddl bifunctional enzyme	UDP-N-acetylmuramate--alanine ligase D-alanine--D-alanine ligase	UDP-N-acetylmuramate--alanine ligase precursor	UDP-N-acetylmuramate--alanine ligase precursor	UDP-N-acetylmuramate--alanine ligase	
CHLTR00781	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00782	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative membrane protein	Putative membrane protein	Putative membrane protein	
CHLTR00783	Anti-sigma factor antagonist	Anti-sigma factor antagonist	anti-sigma factor antagonist	anti-anti-sigma factor identified by similarity to SP:Q9WVX8; match to protein family HMM PF01740; match to protein family HMM TIGR00377	anti-anti-sigma factor identified by similarity to SP:Q9WVX8; match to protein family HMM PF01740; match to protein family HMM TIGR00377	anti-sigma-factor antagonist (STAS) domain protein	anti-sigma F factor antagonist	anti-anti-sigma factor	Anti-anti-sigma factor	anti-sigma-factor antagonist TIGRFAM: anti-anti-sigma factor PFAM: Sulfate transporter/antisigma-factor antagonist STAS KEGG: fra:Francci3_4302 anti-sigma-factor antagonist (STAS) domain protein	anti-sigma F factor antagonist	Anti-sigma-factor antagonist	Anti-sigma-B factor antagonist (Anti-anti-sigma-B factor) Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type f : factor	Anti-sigma-factor antagonist	Anti-sigma-factor antagonist	Anti-sigma-factor antagonist	Anti-anti-sigma factor precursor	Anti-sigma-factor antagonist	Anti-sigma-factor antagonist	Putative anti-sigma factor antagonist	Anti-sigma-factor antagonist	Anti-sigma F factor antagonist	Anti-sigma F factor antagonist	Anti-sigma factor antagonist	Putative anti-sigma factor antagonist	Anti-sigma F factor antagonist	Anti-sigma-factor antagonist	Anti-anti-sigma factor	Anti-sigma factor antagonist	
CHLTR00784	tRNA dimethylallyltransferase	tRNA dimethylallyltransferase	tRNA dimethylallyltransferase	tRNA dimethylallyltransferase	MiaA	tRNA dimethylallyltransferase	tRNA dimethylallyltransferase	similar to tRNA delta(2)-isopentenylpyrophosphate transferase hypothetical protein	conserved gene tRNA delta(2)-isopentenylpyrophosphate transferase	similar to tRNA delta(2)-isopentenylpyrophosphate transferase hypothetical protein	tRNA dimethylallyltransferase	identified by match to protein family HMM PF01715; match to protein family HMM TIGR00174 tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA delta-2-isopentenylpyrophosphate transferase	identified by similarity to SP:P38436; match to protein family HMM PF01715; match to protein family HMM TIGR00174 tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA dimethylallyltransferase	tRNA isopentenylpyrophosphate transferase, putative	tRNA dimethylallyltransferase	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA dimethylallyltransferase	identified by match to protein family HMM PF01715; match to protein family HMM TIGR00174 tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA dimethylallyltransferase	tRNA Delta(2)-isopentenylpyrophosphate transferase	tRNA Delta(2)-isopentenylpyrophosphate transferase	Mb2746c, miaA, len: 314 aa. Equivalent to Rv2727c, len: 314 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 314 aa overlap). Probable miaA, tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8), equivalent to P46811|MIAA_MYCLE|ML0995|B2235_C3_232 TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE from Mycobacterium leprae (311 aa), FASTA scores: opt: 1679, E(): 3.2e-89, (81.85% identity in 314 aa overlap). Also highly similar to many e.g. O69967|MIAA_STRCO|SC4H2.12 from Streptomyces coelicolor (312 aa), FASTA scores: opt: 1006, E(): 1.2e-50, (55.5% identity in 301 aa overlap); O31795|MIAA_BACSU from Bacillus subtilis (314 aa), FASTA scores: opt: 671, E(): 1.9e-31, (38.55% identity in 293 aa overlap);P16384|MIAA_ECOLI|TRPX|B4171 from Escherichia coli strain K12 and Shigella flexneri (316 aa), FASTA scores: opt: 565, E(): 2.3e-25, (35.2% identity in 307 aa overlap);etc. Contains PS00017 ATP/GTP-binding site motif A (P -loop). BELONGS TO THE IPP TRANSFERASE FAMILY. PROBABLE TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE MIAA (IPP TRANSFERASE) (ISOPENTENYL-DIPHOSPHATE:TRNA ISOPENTENYLTRANSFERASE) (IPTASE) (IPPT)	InterProMatches:IPR002627; Molecular Function: tRNA isopentenyltransferase activity (GO:0004811), Molecular Function: ATP binding (GO:0005524), Biological Process: tRNA processing (GO:0008033) tRNA isopentenylpyrophosphate transferase MiaA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA dimethylallyltransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark tRNA delta(2)-isopentenylpyrophosphate transferase	
CHLTR00785	Fe-S cluster oxidoreduase	identified by similarity to GB:AAP77588.1; match to protein family HMM PF04055; match to protein family HMM TIGR00423 radical SAM domain protein	thiamine biosynthesis protein	Putative uncharacterized protein TTHA1092	Similar to Helicobacter pylori hypothetical protein HP0656 SWALL:O25370 (EMBL:AE000579) (383 aa) fasta scores: E(): 1.2e-57, 44.57% id in 341 aa, and to Campylobacter jejuni hypothetical protein CJ0462 SWALL:Q9PI46 (EMBL:AL139075) (348 aa) fasta scores: E(): 1.6e-54, 43.6% id in 344 aa conserved hypothetical protein	Putative uncharacterized protein	Putative	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423 conserved hypothetical protein TIGR00423	Thiamine biosynthesis enzyme ThiH or related uncharacterized enzyme	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423 radical SAM domain protein	Putative uncharacterized protein	conserved hypothetical protein	conserved hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	conserved hypothetical protein TIGRFAM: conserved hypothetical protein: (2.3e-106) PFAM: Radical SAM: (6.5e-18) KEGG: dra:DR0064 hypothetical protein, ev=0.0, 82% identity	thiamine biosynthesis enzyme ThiH	conserved hypothetical protein	hypothetical protein	Hypothetical protein	conserved hypothetical protein	Radical SAM domain protein PFAM: Radical SAM domain protein SMART: Elongator protein 3/MiaB/NifB KEGG: aba:Acid345_2881 hypothetical protein	conserved hypothetical protein identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423	conserved hypothetical protein	conserved hypothetical protein Specificity unclear	conserved hypothetical protein TIGRFAM: conserved hypothetical protein PFAM: Radical SAM domain protein KEGG: fra:Francci3_0533 conserved hypothetical protein	Radical SAM domain protein PFAM: Radical SAM domain protein KEGG: gsu:GSU0442 radical SAM domain protein	biotin synthase thiamine biosynthesis enzyme	conserved hypothetical protein	
CHLTR00786	Putative uncharacterized protein	myosin heavy chain	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00787	Iojap superfamily ortholog	Putative uncharacterized protein	Similar to homolog of plant Iojap proteins	Similar to unknown protein YbeB of Escherichia coli	Similar to conserved hypothetical protein hypothetical protein	conserved gene hypothetical protein	Similar to conserved hypothetical protein hypothetical protein	Putative uncharacterized protein lp_1532	identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 iojap-related protein	iojap protein family	hypothetical protein	identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 iojap-related protein	Putative uncharacterized protein	conserved hypothetical protein	Putative uncharacterized protein	Hypothetical protein	Uncharacterized similar to plant Iojap protein	Putative uncharacterized protein	Putative uncharacterized protein	IojAP-related protein	Mb2443c, -, len: 126 aa. Equivalent to Rv2420c, len: 126 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 126 aa overlap). Conserved hypothetical protein, equivalent to Q9CBZ9|ML1453 HYPOTHETICAL PROTEIN from Mycobacterium leprae (129 aa), FASTA scores: opt: 681, E(): 1.6e-38, (87.0% identity in 123 aa overlap). Also highly similar to Q9RDK9|SCC123.15c HYPOTHETICAL PROTEIN from Streptomyces coelicolor (148 aa), FASTA scores: opt: 447, E(): 5.8e-23, (52.7% identity in 129 aa overlap); and similar to others e.g.  P54457|YQEL_BACSU HYPOTHETICAL PROTEIN from Bacillus subtilis (118 aa), FASTA scores: opt: 318, E(): 1.8e-14, (37.3% identity in 110 aa overlap); Q9KD89|BH1328 HYPOTHETICAL PROTEIN from Bacillus halodurans (117 aa), FASTA scores: opt: 296, E(): 5.1e-13, (37.6% identity in 109 aa overlap); etc. CONSERVED HYPOTHETICAL PROTEIN	Iojap-related protein	conserved hypothetical protein	Putative uncharacterized protein ybeB	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein TTHA1777	Putative uncharacterized protein yccJ	putative ACR, homolog of plant Iojap protein	
CHLTR00788	Acyl Carrier Protein Synthase	Beta-ketoacyl synthase	Probable 3-oxoacyl-[acyl-carrier-protein] synthase II	3-oxoacyl-[acyl-carrier-protein] synthase	identified by similarity to SP:P39435; match to protein family HMM PF00109; match to protein family HMM PF02801 3-oxoacyl-(acyl carrier protein) synthase II	3-oxoacyl-[acyl-carrier-protein] synthase II	beta-ketoacyl-ACP synthase II	3-oxoacyl-[ACP] synthase II	3-oxoacyl-(Acyl-carrier-protein) synthase	identified by similarity to GP:6118425; match to protein family HMM PF00109; match to protein family HMM PF02801 3-oxoacyl-(acyl-carrier-protein) synthase II	KasA	3-oxoacyl-(Acyl-carrier protein) synthase II protein	3-oxoacyl-[acyl-carrier-protein] synthase 1	Mb2269, kasA, len: 416 aa. Equivalent to Rv2245, len: 416 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 416 aa overlap). kasA, beta-ketoacyl-ACP synthase (EC 2.3.1.41), involved in meromycolate extension (see citations below): belongs to the FAS-II system, which utilizes primarily palmitoyl-ACP rather than short-chain acyl-ACP primers. Highly similar to others e.g. L43074|STMFABD3|g870805 beta-ketoacyl-ACP synthase from Streptomyces glaucescens (423 aa), FASTA scores: opt: 1105, E(): 0, (44.6% identity in 417 aa overlap); FABF_ECOLI|P39435 3-oxoacyl-[acyl-carrier-protein] synthase II from Escherichia coli, FASTA score: (39.4% identity in 254 aa overlap); FABB_HORVU|P23902 3-oxoacyl-[acyl-carrier-protein] synthase I, FASTA score: (33.4% identity in 413 aa overlap); etc. Strongest similarity to downstream ORF kasB|Rv2246|MTCY427.27 3-oxoacyl-[acyl-carrier-protein] synthase 2 from Mycobacterium tuberculosis (438 aa), FASTA score: (66.3% identity in 409 aa overlap). BELONGS TO THE BETA-KETOACYL-ACP SYNTHASES FAMILY. 3-OXOACYL-[ACYL-CARRIER PROTEIN] SYNTHASE 1 KASA (BETA-KETOACYL-ACP SYNTHASE) (KAS I)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 3-oxoacyl-synthase II	3-oxoacyl-[acyl carrier protein] synthase II	3-oxoacyl-acyl carrier protein synthase II	IPR000794: Beta-ketoacyl synthase 3-oxoacyl-[acyl-carrier-protein] synthase II	3-oxoacyl-(acyl-carrier-protein) synthase	similar to Salmonella typhi CT18 3-oxoacyl-[acyl-carrier-protein] synthase II 3-oxoacyl-[acyl-carrier-protein] synthase II	Similar to Synechocystis sp.  3-oxoacyl-[acyl-carrier-protein] synthase II FabF or SLL1069 SWALL:FABF_SYNY3 (SWALL:P73283) (416 aa) fasta scores: E(): 7.3e-76, 49.39% id in 415 aa, and to a long series of eukaryotic entries, e.g. Perilla frutescens beta-ketoacyl-ACP synthase I Kas I SWALL:O48942 (EMBL:AF026148) (474 aa) fasta scores: E(): 3.4e-93, 56.97% id in 416 aa 3-oxoacyl-[acyl-carrier-protein] synthase II	similar to BR0461, 3-oxoacyl-(acyl-carrier-protein) synthase II FabF, 3-oxoacyl-(acyl-carrier-protein) synthase II	Putative uncharacterized protein gbs0336	3-oxoacyl-[ACP] synthase II	identified by match to PFAM protein family HMM PF00109 3-oxoacyl-(acyl-carrier-protein) synthase II	3-oxoacyl-[acyl-carrier-protein] synthase II	3-oxoacyl-[acyl-carrier-protein] synthase II	3-oxoacyl-[acyl-carrier-protein] synthase	best blastp match gb|AAK34492.1| (AE006603) putative beta-ketoacyl-ACP synthase II [Streptococcus pyogenes M1 GAS] putative beta-ketoacyl-ACP synthase II	
CHLTR00789	Hydrolase/phosphatase homolog	Similar to Chlamydia muridarum mutt/nudix family protein TC0152 SWALL:Q9PLF2 (EMBL:AE002282) (150 aa) fasta scores: E(): 9.9e-51, 79.19% id in 149 aa, and to Bifidobacterium longum hypothetical protein with possible C-terminal pyrophosphate-releasing NTPase domain BL0653 SWALL:Q8G6I7 (EMBL:AE014686) (181 aa) fasta scores: E(): 3.2e-05, 34.86% id in 109 aa conserved hypothetical protein	hydrolase, NUDIX family identified by match to protein family HMM PF00293	NTP pyrophosphohydrolase including oxidative damage repair enzymes	NUDIX family hydrolase	phosphohydrolase (MutT/nudix family protein)	NUDIX hydrolase	NUDIX hydrolase	NUDIX hydrolase	NUDIX hydrolase	NUDIX family hydrolase	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	AP4A hydrolase	Hydrolase, NUDIX family	
CHLTR00790	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Pyrophosphate phospho-hydrolase protein	Inorganic pyrophosphatase	IPR008162: Inorganic pyrophosphatase; IPR008163: Bacterial/Archaeal inorganic pyrophosphatase inorganic pyrophosphatase	similar to Salmonella typhi CT18 inorganic pyrophosphatase inorganic pyrophosphatase	Similar to Thermococcus litoralis inorganic pyrophosphatase Ppa SWALL:IPYR_THELI (SWALL:P77992) (176 aa) fasta scores: E(): 2.8e-09, 35.82% id in 201 aa, and to Pyrococcus abyssi inorganic pyrophosphatase Ppa or PYRAB16840 or PAB1104 SWALL:IPYR_PYRAB (SWALL:Q9UY24) (178 aa) fasta scores: E(): 1.8e-08, 36.27% id in 204 aa putative inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Putative inorganic pyrophosphatase	putative inorganic pyrophosphatase	inorganic pyrophosphatase	COG0221 inorganic pyrophosphatase	pyrophosphate phospho-hydrolase; PPase; Similar to: HI0124, IPYR_HAEIN inorganic pyrophosphatase	Inorganic pyrophosphatase Ppa protein	Inorganic pyrophosphatase	Similar to Bacillus stearothermophilus inorganic pyrophosphatase Ppa or pmk2ppA SWALL:IPYR_BACST (SWALL:O05724) (164 aa) fasta scores: E(): 5.1e-27, 44.3% id in 158 aa inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	PPase; ortholog to Escherichia coli bnum: b4226; MultiFun: Metabolism 1.7.1, 1.8.1; pyrophosphate phospho-hydrolase inorganic pyrophosphatase	Best Blastp Hit: pir||F81175 inorganic pyrophosphatase NMB0641 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225870|gb|AAF41064.1| (AE002419) inorganic pyrophosphatase [Neisseria meningitidis MC58] COG0221 Inorganic pyrophosphatase putative pyrophosphatase	inorganic pyrophosphatase (EC 3.6.1.1)	Inorganic diphosphatase	Code: C; COG: COG0221 inorganic pyrophosphatase	Inorganic pyrophosphatase	
CHLTR00792	Sulfite Synthesis/biphosphate phosphatase	Similar to Chlamydia trachomatis sulfite synthesis/biphosphate phosphatase CysQ or CT774 SWALL:O84779 (EMBL:AE001349) (342 aa) fasta scores: E(): 2.7e-62, 49.07% id in 324 aa, and to Pseudomonas syringae inositol-1-monophosphatase SuhB or PSPTO1419 SWALL:Q887A5 (EMBL:AE016860) (271 aa) fasta scores: E(): 1.8e-05, 25.24% id in 305 aa putative sulfur metabolism-related protein	3'(2'),5'-bisphosphate nucleotidase	go_component: cytoplasm [goid 0005737]; go_function: 3'(2'),5'-bisphosphate nucleotidase activity [goid 0008441]; go_process: sulfate assimilation [goid 0000103]; go_process: methionine biosynthesis [goid 0009086]; go_process: hyperosmotic salinity response [goid 0042538] myo-inositol-1(or 4)-monophosphatase	3'(2'),5'-bisphosphate nucleotidase identified by match to protein family HMM PF00459; match to protein family HMM TIGR01330	3'(2'),5'-bisphosphate nucleotidase identified by match to protein family HMM PF00459; match to protein family HMM TIGR01331	sulfite synthesis/inositol-1-monophosphatase IMPase, EC 3.1.3.25	3'(2'),5'-bisphosphate nucleotidase identified by match to protein family HMM PF00459; match to protein family HMM TIGR01331	3'(2'),5'-bisphosphate nucleotidase	CysQ protein	3'(2')5'-bisphosphate nucleotidase go_function: inositol or phosphatidylinositol phosphatase activity	3'(2'),5'-bisphosphate nucleotidase	Magnaporthe grisea hypothetical protein	Botrytis cinerea hypothetical protein	Lodderomyces elongisporus (LELG_04684.1) halotolerance protein HAL2 (translation)	ustilago_maydis hypothetical protein	3'(2'),5'-bisphosphate nucleotidase	jgi|Lacbi1|191792|estExt_GeneWisePlus_worm.C_420035	3'(2'),5'-bisphosphate nucleotidase	3'(2'),5'-bisphosphate nucleotidase	3'(2'),5'-bisphosphate nucleotidase	3'(2'),5'-bisphosphate nucleotidase	3(2),5-bisphosphate nucleotidase HAL2	3-Phosphoadenosine 5-phosphosulfate (PAPS) 3- phosphatase	Inositol monophosphatase	3'(2'),5'-bisphosphate nucleotidase	jgi|Monbr1|32506|estExt_fgenesh2_pg.C_110034	3'(2'),5'-bisphosphate nucleotidase	
CHLTR00791	Leucine Dehydrogenase	conserved gene Glu/Leu/Phe/Val dehydrogenase	Similar to leucine dehydrogenase hypothetical protein	identified by match to protein family HMM PF00208; match to protein family HMM PF02812 glutamate/leucine/phenylalanine/valine dehydrogenase family protein	InterProMatches:IPR006095, IPR006095; branched-chain fatty acid biosynthesis, Biological Process: amino acid metabolism (GO:0006520), Molecular Function: oxidoreductase activity (GO:0016491),Biological Process: amino acid metabolism (GO:0006520), Molecular Function: oxidoreductase activity (GO:0016491) leucine dehydrogenase	leucine dehydrogenase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark leucine dehydrogenase	Similar to Thermoanaerobacter tengcongensis glutamate dehydrogenase/leucine dehydrogenase GdhA3 or TTE2202 SWALL:Q8R831 (EMBL:AE013166) (355 aa) fasta scores: E(): 4.9e-48, 41.69% id in 343 aa, and to Bacillus subtilis leucine dehydrogenase YqiT SWALL:DHLE_BACSU (SWALL:P54531) (364 aa) fasta scores: E(): 1.2e-43, 39.42% id in 345 aa putative leucine dehydrogenase	Leucine dehydrogenase	Leucine dehydrogenase	Leucine dehydrogenase	leucine dehydrogenase	identified by match to protein family HMM PF00208; match to protein family HMM PF02812 Glu/Leu/Phe/Val dehydrogenase	leucine dehydrogenase	identified by similarity to SP:P13154; match to protein family HMM PF00208; match to protein family HMM PF02812 leucine dehydrogenase	identified by similarity to SP:P13154; match to protein family HMM PF00208; match to protein family HMM PF02812 leucine dehydrogenase	Glu/Leu/Phe/Val dehydrogenase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme Leucine dehydrogenase	Glutamate dehydrogenase/leucine dehydrogenase-like	Glu/Leu/Phe/Val dehydrogenase	Glu/Leu/Phe/Val dehydrogenase, dimerization region	Glutamate dehydrogenase/leucine dehydrogenase COG0334	Glu/Leu/Phe/Val dehydrogenase PFAM: : (5.6e-13) Glu/Leu/Phe/Val dehydrogenase, dimerisation region: (3.7e-10) KEGG: dra:DR0158 leucine dehydrogenase, ev=1e-151, 78% identity	glutamate/leucine dehydrogenase EC 1.4.1.-	Glu/Leu/Phe/Val dehydrogenase	leucine dehydrogenase	Glu/Leu/Phe/Val dehydrogenase, dimerisation region PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal: (1.2e-22) Glu/Leu/Phe/Val dehydrogenase, dimerisation region: (2.8e-42) KEGG: bca:BCE4237 leucine dehydrogenase, ev=8e-85, 45% identity	Glu/Leu/Phe/Val dehydrogenase, dimerisation region PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal Glu/Leu/Phe/Val dehydrogenase, dimerisation region KEGG: gka:GK2381 leucine dehydrogenase	Glutamate dehydrogenase/leucine dehydrogenase-like	
CHLTR00793	SnGlycerol 3-P Acyltransferase	sn-glycerol-3-p acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferase	
CHLTR00794	Acylglycerophosphoethanolamine Acyltransferase	Similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase hypothetical protein	conserved gene 2-acylglycerophosphoethanolamine acyltransferase	Similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase hypothetical protein	Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolism (GO:0008152) AMP-dependent synthetase and ligase	bifunctional; IPR000873: AMP-dependent synthetase and ligase; IPR002123: Phospholipid/glycerol acyltransferase 2-acylglycerophospho-ethanolamine acyl transferase/acyl-acyl carrier protein synthetase	similar to Salmonella typhi CT18 2-acylglycerophosphoethanolamine acyl transferase/acyl carrier protein synthetase 2-acylglycerophosphoethanolamine acyl transferase/acyl carrier protein synthetase	Similar to the C-terminal region of Pirellula sp 2-acylglycerophosphoethanolamine acyltransferase and acyl-acyl carrier protein synthetase Aas or RB6533 SWALL:CAD74863 (EMBL:BX294144) (766 aa) fasta scores: E(): 3.5e-39, 30.59% id in 487 aa, and of Escherichia coli Aas bifunctional protein [includes: 2-acylglycerophosphoethanolamine acyltransferase (2-acyl-GPE acyltransferase); acyl-acyl carrier protein synthetase (acyl-ACP synthetase)] or B2836 SWALL:AAS_ECOLI (SWALL:P31119) (719 aa) fasta scores: E(): 3.2e-36, 28.54% id in 536 aa putative AMP-binding enzyme	Bifunctional protein aas	Long-chain-fatty-acid--CoA ligase, putative	Similar to AAP18158 2-acyl-glycerophospho-ethanolamine acyltransferase,acyl-acyl-carrier protein synthetase from Shigella flexneri (719 aa). FASTA: opt: 735 Z-score: 862.5 E(): 3.8e-40 Smith-Waterman score: 826; 33.661identity in 508 aa overlap. n. b. No match between aa 1 and 196. Several domains missing compared to AAP18158 ORF ftt0694 conserved hypothetical protein	Bifunctional protein aas	identified by similarity to SP:P29212; match to protein family HMM PF00501 long-chain-fatty-acid--CoA ligase	AMP-dependent synthetase and ligase:Phospholipid/glycerol acyltransferase	Code: IQ; COG: COG0318 2-acyl-glycerophospho-ethanolamine acyltransferase; acyl-acyl-carrier protein synthetase	AMP-dependent synthetase and ligase	acyl-acyl-carrier protein synthetase; Code: IQ; COG: COG0318 2-acyl-glycerophospho-ethanolamine acyltransferase	AMP-dependent synthetase and ligase	AMP-dependent synthetase and ligase	Non-ribosomal peptide synthetase modules and related protein COG1020	acyl-acyl-carrier protein synthetase; Code: IQ; COG: COG0318 2-acyl-glycerophospho-ethanolamine acyltransferase	acyl-coenzyme A synthetase EC 6.2.1.3	Bifunctional protein aas	AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase KEGG: plt:Plut_0972 long-chain fatty-acid-CoA ligase	AMP-dependent synthetase and ligase	Aas bifunctional protein	AMP-dependent synthetase and ligase	2-acylglycerophosphoethanolamine acyltransferase/Acyl-[acyl-carrier-protein] synthetase	conserved hypothetical protein Similar to AAP18158 2-acyl-glycerophospho-ethanolamine acyltransferase,acyl-acyl-carrier protein synthetase from Shigella flexneri (719 aa). FASTA: opt: 735 Z-score: 862.5 E(): 3.8e-40 Smith-Waterman score: 826; 33.661identity in 508 aa overlap. n. b. No match between aa 1 and 196.  Several domains missing compared to AAP18158 ORF ftt0694	
CHLTR00796	Primosomal protein N'	Primosomal protein	Primosomal protein N'	Primosomal protein N' (replication factor Y)	conserved gene primosomal protein N'	Primosomal protein N' (replication factor Y)	identified by similarity to EGAD:98914; match to protein family HMM PF00271; match to protein family HMM TIGR00595 primosomal protein N'	Primosomal protein N'	identified by match to protein family HMM PF00271; match to protein family HMM TIGR00595 primosomal protein N'	PriA ,primosomal protein	InterProMatches:IPR005259 primosomal replication factor Y (primosomal protein N')	primosomal protein N' primosomal replication factor Y	PriA primosomal replication factor	Primosomal protein N'	Primosomal protein N', superfamily II helicase, PriA	Similar to Oceanobacillus iheyensis primosomal replication factor Y PriA or OB1505 SWALL:Q8ER26 (EMBL:AP004598) (802 aa) fasta scores: E(): 1.3e-83, 36.39% id in 805 aa, and to Bacillus subtilis primosomal protein N' PriA SWALL:PRIA_BACSU (SWALL:P94461) (805 aa) fasta scores: E(): 1.9e-80, 35.2% id in 801 aa putative primosomal replication factor	Primosomal replication factor Y	Primosomal replication factor y	primosomal protein	Primosomal protein N'	identified by match to PFAM protein family HMM PF00271 primosomal protein N'	Primosomal protein n	Ortholog of S. aureus MRSA252 (BX571856) SAR1188 primosomal protein n'	PriA, primosomal protein	Primosomal protein N'	best blastp match gb|AAK34400.1| (AE006594) putative primosomal replication factor Y [Streptococcus pyogenes M1 GAS] putative primosomal replication factor Y	Similar to sp|Q9ZD10|PRIA_RICPR sp|P44647|PRIA_HAEIN sp|Q45032|PRIA_BORBU; Ortholog to ERGA_CDS_05510 Primosomal protein N'	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type f : factor primosomal protein N' (= factor Y) directs replication fork assembly at Dloops, ATP-dependent.	COG1198 PriA primosomal protein N' (replication factor Y) - superfamily II helicase similar to NP_360437.1 primosomal protein N'	
CHLTR00795	8-amino-7-oxononanoate synthase	8-amino-7-oxononanoate synthase	8-amino-7-oxononanoate synthase	similar to 2-amino-3-ketobutyrate coenzyme A ligase hypothetical protein	conserved gene aminotransferase class II	similar to 2-amino-3-ketobutyrate coenzyme A ligase hypothetical protein	identified by match to protein family HMM PF00155; match to protein family HMM PF00222 aminotransferase, class II	identified by match to protein family HMM PF00155; match to protein family HMM PF02490; match to protein family HMM TIGR01821 5-aminolevulinic acid synthase	8-amino-7-oxononanoate synthase	8-amino-7-oxononanoate synthase	8-amino-7-oxononanoate synthase	identified by similarity to SP:P53556; match to protein family HMM PF00155 8-amino-7-oxononanoate synthase	2-amino-3-ketobutyrate CoA ligase	IPR001917: Aminotransferase, class-II 7-keto-8-aminopelargonic acid synthetase	Similar to Bacillus sphaericus 8-amino-7-oxononanoate synthase BioF SWALL:BIOF_BACSH (SWALL:P22806) (389 aa) fasta scores: E(): 5.1e-21, 32.39% id in 284 aa, and to Bacillus subtilis 8-amino-7-oxononanoate synthase BioF SWALL:BIOF_BACSU (SWALL:P53556) (389 aa) fasta scores: E(): 1.6e-19, 27.87% id in 348 aa putative biotin syntehsis-related protein	8-amino-7-oxononanoate synthase	hypothetical protein, similar to 8-amino-7-oxononanoate synthase	8-amino-7-oxononanoate synthase	Ortholog of S. aureus MRSA252 (BX571856) SAR2514 putative 8-amino-7-oxononanoate synthase	hypothetical protein, similar to 8-amino-7-oxononanoate synthase	8-amino-7-oxononanoate synthase	8-amino-7-oxononanoate synthase	go_component: mitochondrial matrix [goid 0005759]; go_function: 5-aminolevulinate synthase activity [goid 0003870]; go_process: heme biosynthesis [goid 0006783] aminotransferase, putative	Aminotransferases class-I	8-amino-7-oxononanoate synthase	5-Aminolevulinic acid synthase	identified by match to protein family HMM PF00155 putative 7-keto-8-aminopelargonic acid synthetase	identified by match to protein family HMM PF00155; match to protein family HMM TIGR00858 8-amino-7-oxononanoate synthase	identified by match to protein family HMM PF00155; match to protein family HMM TIGR00858 8-amino-7-oxononanoate synthase	
CHLTR00797	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00798	Thioredoxin Disulfide Isomerase	Thiol-disulfide isomerase or thioredoxin	thioredoxin/thiol-disulfide isomerase EC 5.3.4.1	protein disulfide isomerase	Putative uncharacterized protein	Protein disulfide isomerase precursor	Protein disulfide isomerase precursor	Putative uncharacterized protein precursor	Protein disulfide isomerase	Putative uncharacterized protein	
CHLTR00800	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	identified by match to protein family HMM PF01406; match to protein family HMM TIGR00435 cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	cysteinyl-tRNA synthetase	identified by similarity to SP:P21888; match to protein family HMM PF01406; match to protein family HMM TIGR00435 cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	identified by similarity to SP:P21888; match to protein family HMM PF01406; match to protein family HMM TIGR00435 cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase protein	InterProMatches:IPR002308; Molecular Function: cysteine-tRNA ligase activity (GO:0004817), Biological Process: cysteinyl-tRNA aminoacylation (GO:0006423) cysteinyl-tRNA synthetase	cysteinyl-tRNA synthetase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Similar to Leptospira interrogans cysteinyl-tRNA synthetase CysS or LA1863 SWALL:SYC_LEPIN (SWALL:Q8F525) (471 aa) fasta scores: E(): 2.3e-76, 42.25% id in 471 aa, and to Bacillus subtilis cysteinyl-tRNA synthetase CysS or SpnA SWALL:SYC_BACSU (SWALL:Q06752) (466 aa) fasta scores: E(): 1.5e-64, 38.59% id in 469 aa putative cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	similar to BR0677, cysteinyl-tRNA synthetase CysS, cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Ortholog of S. aureus MRSA252 (BX571856) SAR0533 cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	
CHLTR00799	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	lysine--tRNA ligase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Highly similar to lysyl-tRNA synthetase hypothetical protein	conserved gene lysine tRNA synthetase, heat inducible	Highly similar to lysyl-tRNA synthetase hypothetical protein	Lysyl-tRNA synthetase	identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499 lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	lysyl-tRNA synthetase	Lysyl-tRNA synthetase	lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	identified by similarity to SP:P13030; match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499 lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase 1	Mb3629c, lysS, len: 505 aa. Equivalent to Rv3598c, len: 505 aa, from Mycobacterium tuberculosis H37Rv, (100.0% identity in 505 aa overlap). Probable lysS, lysyl-tRNA synthetase 1 (EC 6.1.1.6), equivalent to P46861|SYK_MYCLE|LYSS|ML0233 LYSYL-TRNA SYNTHETASE from Mycobacterium leprae (507 aa), FASTA scores: opt: 2835, E(): 4.5e-172, (85.45% identity in 501 aa overlap); and similar with C-terminal part of Q9CC23|LYSX|ML1393 C-TERM LYSYL-TRNA SYNTHASE from Mycobacterium leprae (1039 aa) FASTA scores: opt: 1257, E(): 7.6e-72, (44.55% identity in 505 aa overlap). Also similar to others e.g.  P37477|SYK_BACSU|LYSS from Bacillus subtilis (499 aa) FASTA scores: opt: 1294, E(): 1.9e-74, (42.35% identity in 498 aa overlap); Q9RHV9|SYK_BACST|LYSS from Bacillus stearothermophilus (494 aa), FASTA scores: opt: 1258, E(): 3.5e-72, (41.15% identity in 498 aa overlap); Q9PEB6|SYK_XYLFA|LYSS|XF1112 from Xylella fastidiosa (506 aa), FASTA scores: opt: 1228, E(): 2.9e-70, (43.05% identity in 495 aa overlap); etc. Also similar to P94974|SYK2_MYCTU|LYSS2|LYSX|Rv1640c|MTCY06H11.04c LYSYL-TRNA SYNTHETASE 2 from Mycobacterium tuberculosis (1172 aa), FASTA scores: opt: 1295, E(): 3.3e-74, (45.65% identity in 506 aa overlap). Contains PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.  BELONGS TO CLASS-II AMINOACYL-TRNA SYNTHETASE FAMILY. LYSYL-TRNA SYNTHETASE 1 LYSS (LYSINE--TRNA LIGASE 1) (LYSRS 1) (LYSINE TRANSLASE)	InterProMatches:IPR002313; Molecular Function: lysine-tRNA ligase activity (GO:0004824), Molecular Function: ATP binding (GO:0005524), Biological Process: lysyl-tRNA aminoacylation (GO:0006430) lysyl-tRNA synthetase	lysyl-tRNA synthetase	
CHLTR00801	Predicted disulfide bond isomerase	thioredoxin/thiol-disulfide isomerase EC 5.3.4.1	protein disulfide isomerase	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00802	Ribonuclease P protein component	Similar to Thermotoga maritima ribonuclease P protein component RnpA or TM1463 SWALL:RNPA_THEMA (SWALL:Q9X1H4) (117 aa) fasta scores: E(): 4.6e-06, 38.83% id in 103 aa, and to Pirellula sp probable ribonuclease P protein component RnpA or RB7431 SWALL:CAD75357 (EMBL:BX294146) (146 aa) fasta scores: E(): 0.00027, 29.54% id in 132 aa, and to the N-terminal region of Escherichia coli, and Shigella flexneri ribonuclease P protein component RnpA or B3704 or SF3760 or S4011 SWALL:RNPA_ECOLI (SWALL:P06277) (119 aa) fasta scores: E(): 0.00037, 32.96% id in 91 aa putative ribonuclease P protein component	ortholog to Escherichia coli bnum: b3704; MultiFun: Information transfer 2.2.3; Metabolism 1.2.1 RNase P, protein component	protein C5; processes tRNA; 4.5S RNA; Code: J; COG: COG0594 RNase P, protein component	RNase P, protein component; protein C5; processes tRNA, 4.5S RNA; Code: J; COG: COG0594 RnpA	protein C5; processes tRNA, 4.5S RNA; Code: J; COG: COG0594 RNase P, protein component	ribonuclease P protein component EC 3.1.26.5	Ribonuclease P protein component	Ribonuclease P protein component	Ribonuclease P protein component	Ribonuclease P protein component	ribonuclease P protein component	ribonuclease P protein component identified by similarity to SP:P06277; match to protein family HMM PF00825; match to protein family HMM TIGR00188	ribonuclease P protein component	ribonuclease P protein component	inner membrane protein translocase component YidC	ribonuclease P protein component KEGG: son:SO0006 ribonuclease P protein component	Ribonuclease P protein component	Ribonuclease P protein component	TIGRFAM: ribonuclease P protein component PFAM: ribonuclease P protein KEGG: shn:Shewana3_0008 ribonuclease P protein component ribonuclease P protein component	KEGG: sfr:Sfri_4065 ribonuclease P protein component ribonuclease P protein component	Ribonuclease P protein component	Putative uncharacterized protein	Ribonuclease P protein component	Protein C5 component of RNase P	Ribonuclease P protein component	Ribonuclease P protein component	Putative uncharacterized protein	Ribonuclease P protein component	
CHLTR00805	30S ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	conserved gene 30S ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	identified by similarity to EGAD:108305; match to protein family HMM PF00253 ribosomal protein S14	SSU ribosomal protein S14P	30S ribosomal protein S14	identified by similarity to SP:P02370 ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	Mb2082c, rpsN2, len: 101 aa. Equivalent to Rv2056c, len: 101 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 101 aa overlap). Probable rpsN2, ribosomal protein S14, similar to others e.g.  RS14_ECOLI|P02370 30S ribosomal protein S14 from Escherichia coli (100 aa), FASTA scores: opt: 290; E(): 1.7e- 13; (46.0% identity in 100 aa overlap); etc. Also similar to rpsN|Rv0717|MTCY210.36 from Mycobacterium tuberculosis, (50.0% identity in 62 aa overlap). Probable ribosomal protein S14 RpsN2	30S ribosomal protein S14; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) Ribosomal protein S14	30S ribosomal protein S14 family	30S ribosomal protein S14	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 30S ribosomal protein S14	30S ribosomal protein S14	IPR001209: Ribosomal protein S14 30S ribosomal subunit protein S14	Ribosomal protein S14	
CHLTR00806	Leader (60) peptide-periplasmic	conserved hypothetical protein	hypothetical membrane associated protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00806	Leader (60) peptide-periplasmic	conserved hypothetical protein	hypothetical membrane associated protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00807	Putative uncharacterized protein	Putative integral membrane protein	Putative integral membrane protein	
CHLTR00808	Putative uncharacterized protein	hypothetical protein	hypothetical cytosolic protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00809	UvrABC system protein C	UvrABC system protein C	UvrABC system protein C	UvrABC system protein C	excinuclease ABC subunit C	UvrABC system protein C	UvrABC system protein C	similar to excinuclease ABC subunit C hypothetical protein	conserved gene excinuclease ABC subunit	similar to excinuclease ABC subunit C hypothetical protein	UvrABC system protein C	identified by similarity to EGAD:18538; match to protein family HMM PF01541; match to protein family HMM PF02151; match to protein family HMM TIGR00194 excinuclease ABC, C subunit	UvrABC system protein C	Excinuclease ABC subunit C	excinuclease ABC subunit C	identified by match to protein family HMM PF00633; match to protein family HMM PF01541; match to protein family HMM PF02151; match to protein family HMM TIGR00194 UvrABC system protein C	UvrABC system protein C	excinuclease ABC subunit C	UvrABC system protein C	UvrABC system protein C	UvrABC system protein C	UvrABC system protein C	identified by similarity to SP:P14951; match to protein family HMM PF01541; match to protein family HMM PF02151; match to protein family HMM TIGR00194 excinuclease ABC, C subunit	UvrABC system protein C	Excinuclease ABC, C subunit	UvrABC system protein C	Mb1455, uvrC, len: 646 aa. Equivalent to Rv1420, len: 646 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 646 aa overlap). Probable uvrC, excinuclease ABC subunit C, similar to many e.g.  UVRC_PSEFL|P32966 Pseudomonas fluorescens (607 aa), fasta scores: opt: 738, E(): 8.4e-39, (36.6% identity in 629 aa overlap). BELONGS TO THE UVRC FAMILY. PROBABLE EXCINUCLEASE ABC SUBUNIT C UVRC	InterProMatches:IPR004791; excision of ultraviolet light-induced pyrimidine dimers in DNA,Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA repair (GO:0006281), Cellular Component: excinuclease ABC complex (GO:0009380), Molecular Function: excinuclease ABC activity (GO:0009381) excinuclease ABC (subunit C)	UvrABC system protein C excinuclease ABC subunit C UrvC	
CHLTR00810	DNA mismatch repair protein mutS	DNA mismatch repair protein mutS	DNA mismatch repair protein mutS	DNA mismatch repair protein mutS	DNA mismatch repair protein mutS	DNA mismatch repair protein MutS	conserved gene DNA mismatch repair protein MutS	DNA mismatch repair protein MutS	DNA mismatch repair protein mutS	In low GC gram positive bacteria, this gene is generally known as hexA; in other prokaryotes the functional equivalent is known as mutS.; identified by similarity to EGAD:37607; match to protein family HMM PF00488; match to protein family HMM PF01624; match to protein family HMM PF05188; match to protein family HMM PF05190; match to protein family HMM PF05192; match to protein family HMM TIGR01070 DNA mismatch repair protein HexA	DNA mismatch repair protein MutS	DNA mismatch repair protein MutS	identified by match to protein family HMM PF00488; match to protein family HMM PF01624; match to protein family HMM PF05188; match to protein family HMM PF05190; match to protein family HMM PF05192; match to protein family HMM TIGR01070 DNA mismatch repair protein MutS	DNA mismatch repair protein mutS	DNA mismatch repair protein	DNA mismatch repair protein mutS	DNA mismatch repair protein mutS	DNA mismatch repair protein mutS	DNA mismatch repair protein MutS	InterProMatches:IPR005748; DNA mismatch repair recognition,Molecular Function: DNA binding (GO:0003677), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: mismatch repair (GO:0006298) MutS	DNA mismatch repair protein MutS	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark DNA mismatch repair protein	HexA DNA mismatch repair	DNA mismatch repair protein mutS	DNA mismatch repair protein mutS	IPR000432: DNA mismatch repair protein MutS, C-terminal; IPR000504: RNA-binding region RNP-1 (RNA recognition motif); IPR005748: MutS 1 protein;IPR007695: DNA mismatch repair protein MutS, N-terminal;IPR007696: MutS III;IPR007860: MutS II;IPR007861: MutS IV methyl-directed mismatch repair, recognize exocyclic adducts of guanosine	Mismatch repair ATPase, MutS family	similar to Salmonella typhi CT18 DNA mismatch repair protein DNA mismatch repair protein	Similar to Treponema pallidum DNA mismatch repair protein MutS or TP0328 SWALL:MUTS_TREPA (SWALL:O83348) (900 aa) fasta scores: E(): 2.7e-94, 36.91% id in 810 aa, and to Rickettsia conorii DNA mismatch repair protein MutS or RC0401 SWALL:MUTS_RICCN (SWALL:Q92IL9) (890 aa) fasta scores: E(): 2.5e-79, 34.83% id in 821 aa putative DNA mismatch repair protein	
CHLTR00811	Putative uncharacterized protein	pseudo	pseudo	
CHLTR00812	DNA primase	DnaG protein	DNA primase DnaG	identified by similarity to EGAD:15135; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391 DNA primase	DNA primase	DNA primase	DNA primase	identified by similarity to SP:P56064; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391 DNA primase	DnaG	DNA primase	Mb2372c, dnaG, len: 639 aa. Equivalent to Rv2343c, len: 639 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 639 aa overlap). Probable dnaG, DNA primase (EC 2.7.7.-), equivalent to O52200|PRIM_MYCSM|DNAG DNA PRIMASE from Mycobacterium smegmatis (636 aa), FASTA scores: opt: 3504, E(): 5.5e-202, (81.55% identity in 639 aa overlap); and Q9CCG2|DNAG|ML0833 DNA PRIMASE from Mycobacterium leprae (642 aa), FASTA scores: opt: 3443, E(): 2.5e-198, (80.4% identity in 642 aa overlap). Also highly similar to many DNA primases e.g.  Q9S1N4|PRIM_STRCO|DNAG|SC7A8.07c from Streptomyces coelicolor (641 aa), FASTA scores: opt: 1899, E(): 5.1e-106, (47.9% identity in 643 aa overlap); P74893|PRIM_SYNP7|DNAG from Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) (616 aa), FASTA scores: opt: 860, E(): 6.6e-44, (35.3% identity in 513 aa overlap); P05096|PRIM_BACSU from Bacillus subtilis (603 aa) FASTA scores: opt: 800, E(): 2.5e-40, (33.7% identity in 430 aa overlap); etc. PROBABLE DNA PRIMASE DNAG	InterProMatches:IPR006295; initiation of Okazaki fragments,Molecular Function: DNA primase activity (GO:0003896), Biological Process: DNA replication, priming (GO:0006269) DNA primase	DNA primase DnaG	DNA primase	DNA primase	DNA primase	DNA primase, DnaG	Similar to Bacillus subtilis DNA primase DnaG or DnaE SWALL:PRIM_BACSU (SWALL:P05096) (603 aa) fasta scores: E(): 5.1e-46, 29.57% id in 568 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA primase DnaG or DnaP or ParB or B3066 or Z4419 or ECS3949 or SF3107 or S3312 SWALL:PRIM_ECOLI (SWALL:P02923) (581 aa) fasta scores: E(): 2.2e-37, 29.09% id in 574 aa putative DNA primase	DNA primase	DNA primase	DNA primase	identified by similarity to SP:P47762; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391 DNA primase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme DNA primase	Similar to Porphyromonas gingivalis W83 DNA primase DnaG or PG1814 SWALL:AAQ66812 (EMBL:AE017178) (673 aa) fasta scores: E(): 3.5e-122, 51.77% id in 676 aa, and to Bacillus subtilis DNA primase DnaG or DnaE or BSU25210 SWALL:PRIM_BACSU (SWALL:P05096) (603 aa) fasta scores: E(): 7.6e-48, 33.99% id in 453 aa putative DNA primase	DNA primase (bacterial type) DnaG protein	Similar to Q8DEG2 DNA primase from Vibrio vulnificus (587 aa). FASTA: opt: 1152 Z-score: 1324.3 E(): 7.2e-66 Smith-Waterman score: 1155; 39.679 identity in 499 aa overlap. DNA primase	DNA primase	DNA primase	identified by similarity to SP:P02923; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391 DNA primase	
CHLTR00813	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative exported protein precursor	Putative exported protein precursor	
CHLTR00814	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative exported protein precursor	Putative exported protein precursor	Putative exported protein	
CHLTR00815	Glycyl-tRNA synthetase beta subunit	GlyS protein	Glycyl-tRNA synthetase beta subunit	Glycyl-tRNA synthetase beta subunit	glycyl-tRNA synthetase beta chain	conserved gene glycyl tRNA synthetase, beta subunit	glycyl-tRNA synthetase beta chain	Glycyl-tRNA synthetase beta subunit	identified by similarity to SP:P00961; match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211 glycyl-tRNA synthetase, beta subunit	Glycyl-tRNA synthetase, beta chain	glycyl-tRNA synthetase beta subunit	Glycyl-tRNA synthetase beta subunit	Glycyl-tRNA synthetase beta subunit	identified by similarity to SP:P56454; match to protein family HMM PF02092; match to protein family HMM TIGR00211 glycyl-tRNA synthetase, beta subunit	Glycyl-tRNA synthetase	InterProMatches:IPR002311; Molecular Function: glycine-tRNA ligase activity (GO:0004820), Molecular Function: ATP binding (GO:0005524), Biological Process: glycyl-tRNA aminoacylation (GO:0006426) glycyl-tRNA synthetase (beta subunit)	glycyl-tRNA synthetase beta chain	glycyl-tRNA synthetase beta chain	Glycyl-tRNA synthetase beta chain	IPR002311: Glycyl-tRNA synthetase, beta subunit; IPR006194: Heterodimeric glycyl-transfer RNA synthetase glycine tRNA synthetase, beta subunit	Glycyl-tRNA synthetase, beta subunit	similar to Salmonella typhi CT18 glycine-tRNA synthetase, beta subunit glycine-tRNA synthetase, beta subunit	Similar to Anabaena sp. glycyl-tRNA synthetase alpha chain GlyQ or ALL1985 SWALL:SYGA_ANASP (SWALL:Q8YVJ2) (294 aa) fasta scores: E(): 3.6e-66, 56.74% id in 289 aa, and to Tropheryma whipplei glycyl-tRNA synthetase GlyQS or TW262 SWALL:Q83I31 (EMBL:BX251410) (1024 aa) fasta scores: E(): 2.8e-77, 29.35% id in 1039 aa glycyl-tRNA synthetase alpha chain	Glycyl-tRNA synthetase	similar to BR0404, glycyl-tRNA synthetase, beta subunit GlyS, glycyl-tRNA synthetase, beta subunit	Glycyl-tRNA synthetase beta subunit	Glycyl-tRNA synthetase beta chain	identified by match to PFAM protein family HMM PF02092 glycyl-tRNA synthetase, beta subunit	
CHLTR00816	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	PgsA: CDP-diacylglycerol--glycerol-3- phosphatidyltransferase	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	PgsA	phosphatidylglycerophosphate synthase	Probable cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase transmembrane protein	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	Similar to CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase hypothetical protein	conserved gene CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	Similar to CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase hypothetical protein	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	Phosphatidylglycerophosphate synthase	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	CDP-diacylglycerol-glycerol-3-phosphate 3- phosphatidyltransferase	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	CDPdiacylglycerol-glycerol-3-phosphate 3- phosphatidyltransferase	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	PgsA3	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	Mb2767c, pgsA3, len: 209 aa. Equivalent to Rv2746c, len: 209 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 209 aa overlap). Probable pgsA3, PGP synthase (EC 2.7.8.5) (see citation below), transmembrane protein, equivalent, but longer 19 aa, to Q49839|O08087|PGSA|ML0979 PGSA from Mycobacterium leprae (193 aa), FASTA scores: opt: 925, E(): 3.7e-53, (77.15% identity in 188 aa overlap). Also highly similar to O86813|PGSA PHOSPHATIDYLGLYCEROPHOSPHATE SYNTHASE from Streptomyces coelicolor (263 aa), FASTA scores: opt: 692, E(): 6.6e-38, (57.85% identity in 185 aa overlap) (has its N-terminus longer); and similar to others (generally with N-terminus shorter) e.g. Q99XI0|PGSA|SPY2196 PHOSPHATIDYLGLYCEROPHOSPHATE SYNTHASE from Streptococcus pyogenes (180 aa), FASTA scores: opt: 368, E(): 5.4e-17, (39.9% identity in 168 aa overlap); Q9ZE96|PGSA_RICPR|PGSA|RP049 CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3- PHOSPHATIDYLTRANSFERASE from Rickettsia prowazekii (181 aa), FASTA scores: opt: 343, E(): 2.3e-15, (40.1% identity in 172 aa overlap); P06978|PGSA_ECOLI|PGSA|B1912|Z3000|ECS2650 CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3- PHOSPHATIDYLTRANSFERASE from Escherichia coli strains K12 and O157:H7 (181 aa), FASTA scores: opt: 322, E(): 5.3e-14, (34.45% identity in 180 aa overlap); etc. Also some similarity to PGSA2|Rv1822|MTCY1A11.21c PROBABLE CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE from Mycobacterium tuberculosis (209 aa), FASTA score: (27.1% identity in 166 aa overlap).  Contains PS00379 CDP-alcohol phosphatidyltransferases signature. BELONGS TO THE CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE CLASS-I FAMILY. PROBABLE PGP SYNTHASE PGSA3 (CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE) (PHOSPHATIDYLGLYCEROPHOSPHATE SYNTHASE)	InterProMatches:IPR004570, IPR000462; Molecular Function: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity (GO:0008444), Biological Process: phospholipid biosynthesis (GO:0008654), Cellular Component: integral to membrane (GO:0016021) phosphatidylglycerophosphate synthase	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase	PgsA CDP-diacylglycerol- phosphatephosphatidyltransferase	
CHLTR00817	Glycogen synthase	Glycogen synthase (Starch (Bacterial glycogen) synthase) protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark glycogen synthase	Glycogen synthase	IPR001296: Glycosyl transferase, group 1; IPR002114: HPr serine phosphorylation site glycogen synthase	similar to Salmonella typhi CT18 glycogen synthase glycogen synthase	Similar to Synechocystis sp. probable glycogen synthase 2 GlgA2 or SLL1393 SWALL:GLG2_SYNY3 (SWALL:P72623) (491 aa) fasta scores: E(): 4e-46, 32.92% id in 495 aa, and to Bacillus subtilis glycogen synthase GlgA SWALL:GLGA_BACSU (SWALL:P39125) (484 aa) fasta scores: E(): 6.4e-42, 32.63% id in 475 aa putative glycogen synthase	Glycogen synthase	glycogen synthase	Glycogen synthase 2	Glycogen synthase	glycogen synthase	identified by similarity to SP:P39125; match to protein family HMM TIGR02095 glycogen synthase	Glycogen/starch synthases, ADP-glucose type	COG0297, GlgA, Glycogen synthase Citation: PMID: 10729189 (from R. sphaeroides) glycogen synthase	glycogen/starch synthase, ADP-glucose type identified by match to protein family HMM PF00534; match to protein family HMM TIGR02095	Glycogen/starch synthases, ADP-glucose type	Glycogen/starch synthases, ADP-glucose type	glycogen/starch synthase, ADP-glucose type identified by match to protein family HMM PF00534; match to protein family HMM TIGR02095	Glycogen/starch synthases, ADP-glucose type	putative glycogen synthase similarity:fasta; with=UniProt:GLGA_RHOSH (EMBL:AF181035); Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides).; glgA; Glycogen synthase (EC 2.4.1.21) (Starch [bacterial glycogen] synthase).; length=477; id 49.895; 477 aa overlap; query 2-477; subject 7-477 similarity:fasta; with=UniProt:GLGA_RHITR (EMBL:RTR291603); Rhizobium tropici.; glgA; Glycogen synthase (EC 2.4.1.21) (Starch [bacterial glycogen] synthase).; length=480; id 79.332; 479 aa overlap; query 1-479; subject 1-479	glycogen synthase EC 2.4.1.21	glycogen synthase (starch [bacterial glycogen] synthase) protein similar to GlgA [Rhizobium tropici] and glgA1 (SMc03924) [Sinorhizobium meliloti] Similar to entrez-protein:Q9EUT5 Putative location:bacterial cytoplasm Psort-Score: 0.1885; go_function: transferase activity [goid 0016740]; go_function: transferase activity, transferring glycosyl groups [goid 0016757]; go_function: starch synthase activity [goid 0009011]; go_process: biosynthesis [goid 0009058]; go_process: glycogen biosynthesis [goid 0005978]	glycogen synthase	Glycogen/starch synthases, ADP-glucose type	glycogen/starch synthases, ADP-glucose type KEGG: jan:Jann_3115 glycogen/starch synthases, ADP-glucose type TIGRFAM: glycogen/starch synthases, ADP-glucose type PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein	glycogen/starch synthases, ADP-glucose type KEGG: mca:MCA1476 glycogen synthase TIGRFAM: glycogen/starch synthases, ADP-glucose type PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein	glycogen synthase	glycogen/starch synthases, ADP-glucose type TIGRFAM: glycogen/starch synthases, ADP-glucose type PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein KEGG: rru:Rru_A2245 glycogen/starch synthases, ADP-glucose type	
CHLTR00818	50S ribosomal protein L25	50S ribosomal protein L25	50S ribosomal protein L25	similar to 50S ribosomal subunit protein L25, RplY hypothetical protein	conserved gene 50S ribosomal protein L25, ribosomal 5S rRNA E-loop binding protein	similar to 50S ribosomal subunit protein L25, RplY hypothetical protein	identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731 ribosomal protein L25	identified by similarity to SP:P14194; match to protein family HMM PF01386; match to protein family HMM TIGR00731 ribosomal protein L25	50S ribosomal protein L25	50S ribosomal protein L25	identified by similarity to SP:P14194; match to protein family HMM PF01386; match to protein family HMM TIGR00731 ribosomal protein L25	Ribosomal protein L25, Ctc-form	InterProMatches:IPR001021; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412), Molecular Function: 5S rRNA binding (GO: general stress protein	general stress protein, ribosomal protein L25 family	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 50S ribosomal protein L25	50S ribosomal protein L25	Ribosomal protein L25 (general stress protein Ctc)	Similar to Nitrosomonas europaea ribosomal protein L25 RplY or NE1825 SWALL:Q82TQ5 (EMBL:BX321862) (198 aa) fasta scores: E(): 1.9e-12, 29.53% id in 193 aa, and to Ralstonia solanacearum putative 50S ribosomal subunit protein L25 RplY or RSC0394 or RS03362 SWALL:Q8Y2E2 (EMBL:AL646059) (206 aa) fasta scores: E(): 1.9e-12, 29.31% id in 174 aa putative 50S ribosomal protein L25	similar to BR1535, ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5	50S ribosomal protein L25	50S ribosomal protein L25	50S ribosomal protein L25	Hypothetical protein	Ortholog of S. aureus MRSA252 (BX571856) SAR0502 putative 50S ribosomal protein L25	50S ribosomal protein L25	50S ribosomal protein L25	Similar to sp|Q9ZCV3|RL25_RICPR rc||rplY; Ortholog to ERGA_CDS_00850 Probable 50S ribosomal protein L25	identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5	COG1825 RplY ribosomal protein L25 (general stress protein Ctc) 50S ribosomal protein L25	
CHLTR00819	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	similar to peptidyl-tRNA hydrolase hypothetical protein	conserved gene peptidyl tRNA hydrolase	similar to peptidyl-tRNA hydrolase hypothetical protein	Peptidyl-tRNA hydrolase	identified by match to protein family HMM PF01195; match to protein family HMM TIGR00447 peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	peptidyl-tRNA hydrolase	identified by match to protein family HMM PF01195; match to protein family HMM TIGR00447 peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	identified by match to protein family HMM PF01195; match to protein family HMM TIGR00447 peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Mb1042c, pth, len: 191 aa. Equivalent to Rv1014c, len: 191 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 191 aa overlap). Probable pth, peptidyl-tRNA hydrolase (EC 3.1.1.29), similar to PTH_ECOLI|P23932 peptidy l-trna hydrolase from Escherichia coli (194 aa), FASTA scores: opt: 472, E(): 2.3e-25, (39.6% identity in 187 aa overlap). BELONGS TO THE PTH FAMILY. PROBABLE PEPTIDYL-TRNA HYDROLASE PTH	InterProMatches:IPR001328, stage V sporulation; Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045), Biological Process: protein biosynthesis (GO:0006412) peptidyl-tRNA hydrolase	
CHLTR00820	30S ribosomal protein S6	identified by similarity to SP:P21468; match to protein family HMM PF01250; match to protein family HMM TIGR00166 ribosomal protein S6	InterProMatches:IPR000529; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein S6 (BS9)	30S ribosomal protein S6	Similar to Bacillus subtilis 30S ribosomal protein S6 RpsF SWALL:RS6_BACSU (SWALL:P21468) (95 aa) fasta scores: E(): 8.9e-05, 25.27% id in 91 aa, and to Thermoanaerobacter tengcongensis 30S ribosomal protein S6 RpsF or TTE2781 SWALL:RS6_THETN (SWALL:Q8R6M1) (95 aa) fasta scores: E(): 2.9e-09, 40.65% id in 91 aa putative 30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	identified by match to protein family HMM PF01250; match to protein family HMM TIGR00166 ribosomal protein S6	COG0360 ribosomal protein S6	Similar to Escherichia coli 30S ribosomal protein S6 RpsF or B4200 SWALL:RS6_ECOLI (SWALL:P02358) (135 aa) fasta scores: E(): 3.9e-07, 36.84% id in 114 aa, and to Thermoanaerobacter tengcongensis 30S ribosomal protein S6 RpsF or TTE2781 SWALL:RS6_THETN (SWALL:Q8R6M1) (95 aa) fasta scores: E(): 2.2e-12, 44.68% id in 94 aa putative 30S ribosomal protein S6	ribosomal protein S6 (30S ribosomal protein S6)	30S ribosomal protein S6	Ribosomal protein S6	similar to gi|27469290|ref|NP_765927.1| [Staphylococcus epidermidis ATCC 12228], percent identity 84 in 98 aa, BLASTP E(): 2e-43 30S ribosomal protein S6	identified by similarity to SP:P21468; match to protein family HMM PF01250; match to protein family HMM TIGR00166 ribosomal protein S6	Ribosomal protein S6	30S ribosomal protein S6	Ribosomal protein S6	30S ribosomal protein S6	Ribosomal protein S6	ribosomal protein S6	ribosomal protein S6 identified by match to protein family HMM PF01250; match to protein family HMM TIGR00166	30S ribosomal protein S6	SSU ribosomal protein S6P	ribosomal protein S6 identified by match to protein family HMM PF01250; match to protein family HMM TIGR00166	30S ribosomal protein S6 similarity to COG0360 Ribosomal protein S6(Evalue: 3E-23)	ribosomal protein S6 identified by similarity to SP:P21468; match to protein family HMM PF01250; match to protein family HMM TIGR00166	ribosomal protein S6 identified by match to protein family HMM PF01250; match to protein family HMM TIGR00166	30S ribosomal subunit protein S6	
CHLTR00821	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30s ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal subunit protein S18	conserved gene 30S ribosomal protein S18	30S ribosomal subunit protein S18	30S ribosomal protein S18	identified by match to protein family HMM PF01084; match to protein family HMM TIGR00165 ribosomal protein S18	30S ribosomal protein S18	SSU ribosomal protein S18P	30S ribosomal protein S18	identified by similarity to SP:P02374; match to protein family HMM PF01084; match to protein family HMM TIGR00165 ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	identified by similarity to SP:P21475; match to protein family HMM PF01084; match to protein family HMM TIGR00165 ribosomal protein S18	30S ribosomal protein S18 2	Ribosomal protein S18	30S ribosomal protein S18 2	Mb2081c, rpsR2, len: 88 aa. Equivalent to Rv2055c, len: 88 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 88 aa overlap). Probable rpsR2, ribosomal protein S18, similar to others e.g.  RR18_ODOSI|P49505 chloroplast 30S ribosomal protein S18 (72 aa), FASTA scores: opt: 209, E(): 4.7e-09, (51.6% identity in 64 aa overlap); etc. Also similar to rpsR|Rv0055|MTCY21D4.18 from Mycobacterium tuberculosis (50.0% identity in 84 aa overlap). Probable ribosomal protein S18 RpsR2	InterProMatches:IPR001648; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein S18	
CHLTR00822	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	conserved gene 50S ribosomal protein L9	50S ribosomal protein L9	identified by match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158 ribosomal protein L9	50S ribosomal protein L9	identified by similarity to SP:P02418; match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158 ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	identified by similarity to SP:P02417; match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158 ribosomal protein L9	50S ribosomal protein L9	Ribosomal protein L9	50S ribosomal protein L9	Mb0057, rplI, len: 152 aa. Equivalent to Rv0056, len: 152 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 152 aa overlap). Probable rplI, 50S ribosomal protein L9, equivalent to RL9_MYCLE|P46385 50s ribosomal protein l9 from Mycobacterium leprae (152 aa), FASTA scores: opt: 847, E(): 0, (88.7% identity in 150 aa overlap). Also highly similar to others e.g.  Q9X8U5|RL9_STRCO 50S RIBOSOMAL PROTEIN L9 from Streptomyces coelicolor (148 aa); etc. Contains PS00651 Ribosomal protein L9 signature. BELONGS TO THE L9P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 50S RIBOSOMAL PROTEIN L9 RPLI	InterProMatches:IPR000244; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein L9	50S ribosomal protein L9	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 50S ribosomal protein L9	COG0359 Ribosomal protein L9 50S ribosomal protein L9	50S ribosomal protein L9	IPR000244: Ribosomal protein L9 50S ribosomal subunit protein L9	Ribosomal protein L9	similar to Salmonella typhi CT18 50s ribosomal subunit protein L9 50s ribosomal subunit protein L9	
CHLTR00823	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	identified by match to protein family HMM PF00288; match to protein family HMM TIGR00154 4-diphosphocytidyl-2C-methyl-D-erythritol kinase	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	Similar to Pasteurella multocida 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase IspE or PM0245 SWALL:ISPE_PASMU (SWALL:P57833) (295 aa) fasta scores: E(): 4.3e-23, 36.59% id in 276 aa, and to Escherichia coli, and Escherichia coli O157:H7 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase IspE or Ipk or B1208 or Z1979 or ECS1713 SWALL:ISPE_ECOLI (SWALL:P24209) (283 aa) fasta scores: E(): 4.3e-16, 34.24% id in 257 aa putative erythritol kinase	similar to BR0394, 4-diphosphocytidyl-2C-methyl-D-erythritol kinase IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol kinase	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	hypothetical protein, similar to 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	Hypothetical protein	Ortholog of S. aureus MRSA252 (BX571856) SAR0496 conserved hypothetical protein	hypothetical protein, similar to 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	Similar to sp|Q8UHP8|ISPE_AGRT5 sp|Q9X3W5|ISPE_ZYMMO sp|Q9A8L7|ISPE_CAUCR sp|Q986C6|ISPE_RHILO; Ortholog to ERGA_CDS_03370 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	COG1947 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	CMK; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase; Similar to: HI1608, ISPE_HAEIN 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	Similar to Escherichia coli, and Escherichia coli O157:H7 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase IspE or Ipk or B1208 or Z1979 or ECS1713 SWALL:ISPE_ECOLI (SWALL:P24209) (283 aa) fasta scores: E(): 9.4e-15, 31.55% id in 263 aa, and to Bacteroides thetaiotaomicron 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase BT0624 SWALL:AAO75731 (EMBL:AE016928) (274 aa) fasta scores: E(): 7.2e-77, 70.43% id in 274 aa putative terpenoid biosynthesis-related protein	4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase IspE protein	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2C-methyl-D-erythritol 2- phosphate synthase	hypothetical protein, similar to 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	Similar to sp|Q8UHP8|ISPE_AGRT5 sp|Q9X3W5|ISPE_ZYMMO sp|Q9A8L7|ISPE_CAUCR sp|Q986C6|ISPE_RHILO; Ortholog to ERWE_CDS_03410 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	Similar to internal region of Mentha piperita (Peppermint) chloroplast 4-diphosphocytidyl-2-c-methyl-D-erythritol kinase IPK SW:ISPE_MENPI (P56848) (405 aa) fasta scores: E(): 4.8e-19, 30.153% id in 262 aa. Full length CDS is similar to Bacillus subtilis putative 4-diphosphocytidyl-2-c-methyl-D-erythritol kinase Ipk SW:ISPE_BACSU (P37550) (289 aa) fasta scores: E(): 3.1e-56, 50.534% id in 281 aa conserved hypothetical protein	identified by match to protein family HMM PF00288; match to protein family HMM TIGR00154 4-diphosphocytidyl-2C-methyl-D-erythritol kinase	Cell division protein FtsZ:TonB-dependent receptor protein:Homoserine kinase:4-diphosphocytidyl-2C-methyl-D-erythritol kinase...	
CHLTR00823	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	identified by match to protein family HMM PF00288; match to protein family HMM TIGR00154 4-diphosphocytidyl-2C-methyl-D-erythritol kinase	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	Similar to Pasteurella multocida 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase IspE or PM0245 SWALL:ISPE_PASMU (SWALL:P57833) (295 aa) fasta scores: E(): 4.3e-23, 36.59% id in 276 aa, and to Escherichia coli, and Escherichia coli O157:H7 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase IspE or Ipk or B1208 or Z1979 or ECS1713 SWALL:ISPE_ECOLI (SWALL:P24209) (283 aa) fasta scores: E(): 4.3e-16, 34.24% id in 257 aa putative erythritol kinase	similar to BR0394, 4-diphosphocytidyl-2C-methyl-D-erythritol kinase IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol kinase	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	hypothetical protein, similar to 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	Hypothetical protein	Ortholog of S. aureus MRSA252 (BX571856) SAR0496 conserved hypothetical protein	hypothetical protein, similar to 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	Similar to sp|Q8UHP8|ISPE_AGRT5 sp|Q9X3W5|ISPE_ZYMMO sp|Q9A8L7|ISPE_CAUCR sp|Q986C6|ISPE_RHILO; Ortholog to ERGA_CDS_03370 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	COG1947 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	CMK; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase; Similar to: HI1608, ISPE_HAEIN 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	Similar to Escherichia coli, and Escherichia coli O157:H7 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase IspE or Ipk or B1208 or Z1979 or ECS1713 SWALL:ISPE_ECOLI (SWALL:P24209) (283 aa) fasta scores: E(): 9.4e-15, 31.55% id in 263 aa, and to Bacteroides thetaiotaomicron 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase BT0624 SWALL:AAO75731 (EMBL:AE016928) (274 aa) fasta scores: E(): 7.2e-77, 70.43% id in 274 aa putative terpenoid biosynthesis-related protein	4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase IspE protein	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2C-methyl-D-erythritol 2- phosphate synthase	hypothetical protein, similar to 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	Similar to sp|Q8UHP8|ISPE_AGRT5 sp|Q9X3W5|ISPE_ZYMMO sp|Q9A8L7|ISPE_CAUCR sp|Q986C6|ISPE_RHILO; Ortholog to ERWE_CDS_03410 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	Similar to internal region of Mentha piperita (Peppermint) chloroplast 4-diphosphocytidyl-2-c-methyl-D-erythritol kinase IPK SW:ISPE_MENPI (P56848) (405 aa) fasta scores: E(): 4.8e-19, 30.153% id in 262 aa. Full length CDS is similar to Bacillus subtilis putative 4-diphosphocytidyl-2-c-methyl-D-erythritol kinase Ipk SW:ISPE_BACSU (P37550) (289 aa) fasta scores: E(): 3.1e-56, 50.534% id in 281 aa conserved hypothetical protein	identified by match to protein family HMM PF00288; match to protein family HMM TIGR00154 4-diphosphocytidyl-2C-methyl-D-erythritol kinase	Cell division protein FtsZ:TonB-dependent receptor protein:Homoserine kinase:4-diphosphocytidyl-2C-methyl-D-erythritol kinase...	
CHLTR00824	Putative uncharacterized protein	Putative uncharacterized protein	Similar to Xylella fastidiosa hypothetical protein XF0042 SWALL:Q9PHA2 (EMBL:AE003858) (420 aa) fasta scores: E(): 1.5e-35, 29.35% id in 436 aa, and to Nitrosomonas europaea hypothetical protein NE1228 SWALL:Q82V73 (EMBL:BX321860) (418 aa) fasta scores: E(): 5.5e-32, 27.84% id in 431 aa conserved hypothetical membrane protein	conserved hypothetical protein	Putative uncharacterized protein	putative membrane protein	Protein of unknown function DUF1504	conserved hypothetical protein	protein of unknown function DUF1504	Hypothetical protein	conserved hypothetical membrane protein Conserved hypothetical membrane protein. Homology to ORF428 of Roseateles depolymerans of 65% (trembl|Q9F206(SRS)). Pfam: Protein of unknown function (DUF1504). This family consists of several hypothetical bacterial proteins of around 440 residues in length. The function of this family is unknown. signal peptide. 10 TMHs Conserved hypothetical protein	protein of unknown function DUF1504 PFAM: protein of unknown function DUF1504 KEGG: neu:NE1228 hypothetical protein	hypothetical membrane spanning protein	Hypothetical protein	protein of unknown function DUF1504	Hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative membrane protein	Putative uncharacterized protein precursor	Putative uncharacterized protein	Putative integral membrane protein	Putative integral membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein precursor	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00825	Insulinase family/Protease III	Protease III	IPR001431: Peptidase M16, insulinase-like; IPR007863: Peptidase M16 inactive protease III	similar to Salmonella typhi CT18 protease III precursor (pitrilysin) protease III precursor (pitrilysin)	Similar to Vibrio parahaemolyticus peptidase, insulinase family VP2206 SWALL:Q87MM5 (EMBL:AP005080) (925 aa) fasta scores: E(): 3.3e-48, 24.7% id in 927 aa, and to Shewanella oneidensis peptidase, M16 family SO3083 SWALL:Q8ECQ2 (EMBL:AE015745) (929 aa) fasta scores: E(): 1.7e-41, 23.1% id in 896 aa putative exported peptidase	Protease III	insulin-degrading enzyme	Similar to Porphyromonas gingivalis W83 peptidase, M16 family PG0196 SWALL:AAQ65430 (EMBL:AE017172) (941 aa) fasta scores: E(): 9.4e-44, 23.22% id in 969 aa, and to Escherichia coli probable zinc protease PqqL or B1494 SWALL:PQQL_ECOLI (SWALL:P31828) (931 aa) fasta scores: E(): 9.8e-26, 22.15% id in 948 aa putative peptidase	Protease 3	similar to insulysin (GI:347022) (Rattus norvegicus) similar to a-factor processing enzyme STE23 (GI:8478552) (Saccharomyces cerevisiae); go_component: integral to membrane [goid 0016021]; go_function: metallopeptidase activity [goid 0008237]; go_process: conjugation with cellular fusion [goid 0000747]; go_process: proteolysis and peptidolysis [goid 0006508]; go_process: peptide pheromone maturation [goid 0007323] metallopeptidase (Ste23), putative	protease III	Putative coenzyme PQQ synthesis protein F	Code: O; COG: COG1025 protease III	Code: O; COG: COG1025 protease III	insulin-degrading enzyme [Source:HGNC Symbol;Acc:5381]	protease III precursor	transcript_id=ENSOCUT00000002831	peptidase M16-like protein	Code: O; COG: COG1025 protease III	Protease III	Peptidase M16-like protein	Peptidase M16 domain protein	Protease III precursor	Pseudouridine synthase, Rsu	Peptidase M16 domain protein	Peptidase M16-like	Protease III	transcript_id=ENSOGAT00000015257	
CHLTR00826	Glycerol-3-P Acyltransferase	glycerol-3-P acyltransferase EC 2.3.1.15	glycerol-3-phosphate acyltransferase	Glycerol-3-phosphate acyltransferase	Glycerol-3-phosphate acyltransferase	Glycerol-3-phosphate acyltransferase	
CHLTR00827	Axial Filament Protein	S1 RNA binding domain:Ribonuclease E and G	Probable ribonuclease g	Ribonuclease G	Ribonuclease G	Ribonuclease G	ribonuclease G	IPR003029: RNA binding S1; IPR004659: Ribonuclease E and G RNase G	similar to Salmonella typhi Ty2 ribonuclease G ribonuclease G	Similar to Xylella fastidiosa ribonuclease G CafA or PD0416 SWALL:Q87EA2 (EMBL:AE012554) (497 aa) fasta scores: E(): 6.7e-58, 39.61% id in 472 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri ribonuclease G CafA or Rng or B3247 or C4001 or Z4605 or ECS4119 or SF3285 or S3502 SWALL:RNG_ECOLI (SWALL:P25537) (488 aa) fasta scores: E(): 7.8e-46, 35.25% id in 485 aa putative ribonuclease	Ribonuclease G	Ribonuclease G	Hypothetical protein	identified by match to protein family HMM PF00575 ribonuclease, Rne/Rng family	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme ribonuclease G, endoribonuclease G (cytoplasmic axial filament protein )	Ribonuclease G	ribonuclease G	RNase G; cytoplasmic axial filament protein; Similar to: HI1353, RNG_HAEIN ribonuclease G	Similar to Escherichia coli ribonuclease E Rne or Ams or Hmp1 or B1084 SWALL:RNE_ECOLI (SWALL:P21513) (1061 aa) fasta scores: E(): 3.7e-42, 32.88% id in 523 aa, and to Bacteroides thetaiotaomicron ribonuclease G BT1500 SWALL:AAO76607 (EMBL:AE016932) (524 aa) fasta scores: E(): 1.7e-187, 94.65% id in 524 aa, and to Chlorobium tepidum ribonuclease G CafA or CT2260 SWALL:Q8KAA6 (EMBL:AE012970) (560 aa) fasta scores: E(): 1e-55, 36.57% id in 555 aa putative ribonuclease E	Ribonucleases G and E CafA protein	Cytoplasmic axial filament protein	Similar to RNG_ECOLI (P25537) Ribonuclease G from E.  coli (488 aa). FASTA: opt: 1439 Z-score: 1642.1 E(): 1.4e-83 Smith-Waterman score: 1439; 45.418 identity in 491 aa overlap Ribonuclease G	RNase G	Similar to Escherichia coli ribonuclease E Rne or Ams or Hmp1 or b1084 SWALL:RNE_ECOLI (SWALL:P21513) (1061 aa) fasta scores: E(): 9.7e-38, 36.25% id in 411 aa, and to Streptomyces coelicolor hypothetical protein SCO2599 or SCC88.10c SWALL:Q9L1H8 (EMBL:AL139298) (1340 aa) fasta scores: E(): 1.6e-58, 44.28% id in 560 aa ribonuclease E	RNase G	ribonuclease G (RNase G)	ribonuclease G	identified by similarity to SP:P25537; match to protein family HMM PF00575; match to protein family HMM TIGR00757 ribonuclease G	cytoplasmic axial filament protein ribonuclease G	
CHLTR00828	Putative uncharacterized protein	conserved hypothetical protein	hypothetical cytosolic protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00829	50S ribosomal protein L32	identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031 ribosomal protein L32	identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031 ribosomal protein L32	50S ribosomal protein L32	50S ribosomal protein L32	50S ribosomal protein L32	Similar to Thermus thermophilus 50S ribosomal protein L32 RpmF or Rpl32 SWALL:RL32_THETH (SWALL:P80339) (59 aa) fasta scores: E(): 1.2e-07, 45.45% id in 55 aa, and to Lactobacillus plantarum ribosomal protein L32 RpmF or LP_1535.1 or LP_1535A SWALL:Q88WS9 (EMBL:AL935256) (59 aa) fasta scores: E(): 2.8e-07, 47.36% id in 57 aa 50S ribosomal protein L32	LSU ribosomal protein L32P	identified by sequence similarity; putative; ORF located using Blastx; COG0333 50S ribosomal protein L32	identified by sequence similarity; putative; ORF located using Blastx; COG0333 50S ribosomal protein L32	identified by similarity to SP:O34687; match to protein family HMM PF01783; match to protein family HMM TIGR01031 ribosomal protein L32	similar to gi|27467745|ref|NP_764382.1| [Staphylococcus epidermidis ATCC 12228], percent identity 96 in 57 aa, BLASTP E(): 4e-27 50S ribosomal protein L32	identified by similarity to SP:O34687; match to protein family HMM PF01783; match to protein family HMM TIGR01031 ribosomal protein L32	50S ribosomal protein L32	COG0333.1, RpmF Citation: Herold M, Nierhaus KH. J Biol Chem. 1987 Jun 25;262(18):8826-33. possible 50S ribosomal protein L32	50S ribosomal protein L32	ribosomal protein L32	ribosomal protein S32	LSU ribosomal protein L32 COG0333 [J] Ribosomal protein L32	ribosomal protein L32 TIGRFAM: ribosomal protein L32: (3.4e-34) PFAM: ribosomal L32p protein: (1.5e-31) KEGG: dra:DR2366 50S ribosomal protein L32, ev=2e-28, 91% identity	50S ribosomal protein L32	Ribosomal protein S32	ribosomal protein L32	Ribosomal protein S32	ribosomal protein L32 TIGRFAM: ribosomal protein L32: (3.4e-31) PFAM: ribosomal L32p protein: (6.7e-28) KEGG: sil:SPO2492 ribosomal protein L32, ev=9e-31, 88% identity	ribosomal protein L32 TIGRFAM: ribosomal protein L32 PFAM: ribosomal L32p protein KEGG: ttj:TTHA0418 50S ribosomal protein L32	LSU ribosomal protein L32P	50S ribosomal protein L32 identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031	LSU ribosomal protein L32P	
CHLTR00830	Phosphate acyltransferase	Phosphate acyltransferase	Phosphate acyltransferase	Fatty acid/phospholipid synthesis protein plsX	Phosphate acyltransferase	Phosphate acyltransferase	Fatty acid/phospholipid synthesis protein	conserved gene fatty acid/phospholipid synthesis protein PlsX	Fatty acid/phospholipid synthesis protein	Phosphate acyltransferase	identified by match to protein family HMM PF02504; match to protein family HMM TIGR00182 fatty acid/phospholipid synthesis protein PlsX	Phosphate acyltransferase	Fatty acid/phospholipid synthesis protein plsX	fatty acid/phospholipid synthesis protein	identified by match to protein family HMM PF02504; match to protein family HMM TIGR00182 fatty acid/phospholipid synthesis protein PlsX	Phosphate acyltransferase	fatty acid/phospholipid synthesis protein	Fatty acid/phospholipid synthesis protein plsX	Fatty acid/phospholipid synthesis protein plsX	Phosphate acyltransferase	identified by match to protein family HMM PF02504; match to protein family HMM TIGR00182 fatty acid/phospholipid synthesis protein PlsX	Fatty acid/phospholipid synthesis protein PlsX	InterProMatches:IPR003664; involved in fatty acid/phospholipid synthesis,Molecular Function: catalytic activity (GO:0003824), Biological Process: fatty acid biosynthesis (GO:0006633) phospholipid biosythesis protein PlsX	fatty acid/phospholipid synthesis protein PlsX	Phosphate acyltransferase	PlsX fatty acid-phospholipid synthesis protein	Fatty acid/phospholipid synthesis protein	Fatty acid/phospholipid synthesis protein plsX	IPR003664: Fatty acid synthesis plsX protein putative fatty acid/phospholipid synthesis protein	
CHLTR00831	Probable outer membrane protein pmpD	pseudo autotransporter (putative serine protease) (pseudogene)	polymorphic outer membrane protein D	serine protease, subtilase family identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; match to protein family HMM TIGR02601	polymorphic outer membrane protein	Outer membrane autotransporter barrel domain protein precursor	Polymorphic outer membrane protein precursor	Polymorphic outer membrane protein precursor	Outer membrane autotransporter barrel domain protein precursor	Polymorphic outer membrane protein	

CHLTR00832	Putative uncharacterized protein	Candidate inclusion membrane protein	Candidate inclusion membrane protein	
CHLTR00833	Putative uncharacterized protein	conserved hypothetical protein	hypothetical membrane associated protein	Putative membrane protein	Putative membrane protein	Putative membrane protein	
CHLTR00834	Putative uncharacterized protein	conserved hypothetical protein	hypothetical membrane associated protein	Putative membrane protein	Putative membrane protein	Putative membrane protein	
CHLTR00835	Phosphoglucosamine mutase	Phosphoglucosamine mutase	phosphohexomutase	Phosphoglucosamine mutase	Phosphoglucosamine mutase	Phosphoglucosamine mutase	Phosphoglucosamine mutase	Similar to phosphoglucomutase hypothetical protein	conserved gene phosphoglucomutase/phosphomannomutase MrsA	Similar to phosphoglucomutase hypothetical protein	Phosphoglucosamine mutase	identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR01455 phosphoglucosamine mutase	Phosphoglucosamine mutase	phosphoglucomutase and phosphomannomutase	identified by similarity to SP:P31120; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR01455 phosphoglucosamine mutase	Phosphoglucosamine mutase	phospho-sugar mutase, putative	Phosphoglucosamine mutase	Phosphoglucosamine mutase	identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR01455 phosphoglucosamine mutase	Phosphoglucosamine mutase	Phosphoglucosamine mutase	phosphoglucomutase putative Phosphoglucosamine mutase GlmM	glycolysis phosphoglucomutase	Phosphoglucosamine mutase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark phosphohexose mutase	COG1109 Phosphomannomutase phosphoglucomutase (glycolysis)	Phosphoglucosamine mutase	Phosphoglucosamine mutase	
CHLTR00836	Glucosamine--fructose-6-phosphate aminotransferase	Glutamine amidotransferase class-II:SIS domain	glucosamine--fructose-6-phosphate aminotransferase (isomerizing)	Glucosamine--fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase	conserved gene glucosamine-fructose-6-phosphate aminotransferase, isomerizing	Glucosamine--fructose-6-phosphate aminotransferase	identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 glucosamine--fructose-6-phosphate aminotransferase, isomerizing	identified by similarity to SP:Q56213; match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 glucosamine--fructose-6-phosphate aminotransferase (isomerizing)	Glucosamine-fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase	Glucosamine 6-phosphate synthetase	identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 glucosamine--fructose-6-phosphate aminotransferase, isomerizing	Glucosamine--fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase	Mb3466c, glmS, len: 624 aa. Equivalent to Rv3436c, len: 624 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 624 aa overlap). Probable glmS, glucosamine--fructose-6-phosphate aminotransferase (EC 2.6.1.16), equivalent to P40831|GLMS_MYCLE|ML0371|B229_C3_238 GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE [ISOMERIZING] from Mycobacterium leprae (623 aa), FASTA scores: opt: 3584, E(): 4.7e-214, (89.3% identity in 627 aa overlap). Also highly similar to others e.g.  O68956|GLMS_MYCSM from Mycobacterium smegmatis (627 aa), FASTA scores: opt: 3517, E(): 6.5e-210, (87.25% identity in 627 aa overlap); O86781|GLMS_STRCO|SC6G4.18 from Streptomyces coelicolor (614 aa), FASTA scores: opt: 2364, E(): 1.3e-138, (64.95% identity in 625 aa overlap); Q9K1P9|NMB0031 from Neisseria meningitidis (serogroup B) and Q9JWN9|GLMS|NMA0276 from Neisseria meningitidis (serogroup A) (612 aa), FASTA scores: opt: 1445, E(): 8.4e-82, (43.55% identity in 627 aa overlap); etc. BELONGS TO THE TYPE-2 GATASE DOMAIN IN THE N-TERMINAL SECTION.  BELONGS TO THE SIS FAMILY, GLMS SUBFAMILY, IN THE C-TERMINAL SECTION. PROBABLE GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE [ISOMERIZING] GLMS (HEXOSEPHOSPHATE AMINOTRANSFERASE) (D-FRUCTOSE-6-PHOSPHATE AMIDOTRANSFERASE) (GFAT) (L-GLUTAMINE-D-FRUCTOSE-6-PHOSPHATE AMIDOTRANSFERASE) (GLUCOSAMINE-6-PHOSPHATE SYNTHASE)	glucosamine--fructose-6-phosphate aminotransferase [isomerizing]	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark glucosamine-fructose-6-phosphate aminotransferase	Glucosamine--fructose-6-phosphate aminotransferase	IPR000583: Glutamine amidotransferase, class-II L-glutamine:D-fructose-6-phosphate aminotransferase	Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains	similar to Salmonella typhi CT18 glucosamine--fructose-6-phosphate aminotransferase glucosamine--fructose-6-phosphate aminotransferase	Similar to Escherichia coli glucosamine--fructose-6-phosphate aminotransferase [isomerizing] GlmS or B3729 SWALL:GLMS_ECOLI (SWALL:P17169) (608 aa) fasta scores: E(): 1.9e-82, 40.61% id in 618 aa, and to Thermoanaerobacter tengcongensis glucosamine--fructose-6-phosphate aminotransferase [isomerizing] GlmS or TTE2190 SWALL:GLMS_THETN (SWALL:Q8R841) (607 aa) fasta scores: E(): 5.1e-100, 43.69% id in 611 aa glucosamine--fructose-6-phosphate aminotransferase [isomerizing]	Glucosamine-fructose-6-phosphate aminotransferase	similar to BRA0582, glucosamine--fructose-6-phosphate aminotransferase (isomerizing) GlmS, glucosamine--fructose-6-phosphate aminotransferase (isomerizing)	
CHLTR00837	Tyrosine Transport	tyrosine-specific transport protein	TyrP-B; tyrosine permease 2; Similar to: HI0528, TYRQ_HAEIN tyrosine-specific transport protein 2	tyrosine permease tyrosine-specific transport protein	Tyrosine-specific transport protein	tyrosine-specific transport protein	Phosphoglycerate kinase	Tyrosine-specific transport protein 2	Aromatic amino acid transporter precursor	Tyrosine-specific transport protein precursor	Tyrosine-specific transport protein precursor	Tyrosine-specific transport protein	Tyrosine-specific transport protein	Tyrosine-specific transport protein/HAAAP family hydroxy/aromatic amino acid permease	Tyrosine-specific transport protein	Tyrosine-specific transport protein	

CHLTR00838	Tyrosine Transport	Similar to tyrosine-specific transport system TyrP of Escherichia coli	HAAAP family tyrosine:H+ symporter, tyrP	TyrP-A; tyrosine permease 1; Similar to: HI0477, TYRP_HAEIN tyrosine-specific transport protein 1	Amino acid permeases SdaC protein	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter tyrosine-specific transport protein (HAAAP family)	Code: E; COG: COG0814 tyrosine-specific transport system	Tyrosine-specific transport protein	Tyrosine-specific transport protein precursor	Tyrosine-specific transport protein	Tyrosine-specific transport protein	Tyrosine-specific transport protein precursor	tyrosine-specific transport protein	Tyrosine-specific transport protein precursor	Tyrosine-specific transport protein	putative amino acid permease	tyrosine-specific transport system Code: E; COG: COG0814	Tyrosine-specific transport protein precursor	tyrosine-specific transport system	Imidazole glycerol phosphate synthase subunit HisF	Tyrosine-specific transport protein 1	Tyrosine-specific transport protein 2	tyrosine-specific transport protein, putative KEGG: son:SO1074 tyrosine-specific transport protein, putative	Tyrosine-specific transport protein	Tyrosine-specific transport protein	Aromatic amino acid transporter precursor	Tyrosine transporter	Tyrosine-specific transport protein	Tyrosine-specific transport protein	
CHLTR00839	Uncharacterized protein CT_819	Similar to hypothetical integral membrane protein YbhL of Escherichia coli	Integral membrane protein	Integral membrane protein	identified by match to protein family HMM PF01027 membrane protein, putative	conserved hypothetical protein, membrane protein	identified by similarity to SP:O25578; match to protein family HMM PF01027 membrane protein, putative	Integral membrane protein interacts with FtsH	Uncharacterized protein yrjE	putative permease	Integral membrane protein, interacts with FtsH	similar to Salmonella typhimurium putative permease putative permease	Similar to Yersinia pestis putative membrane protein YPO1163 or Y3018 SWALL:Q8ZGW1 (EMBL:AJ414146) (236 aa) fasta scores: E(): 3.4e-16, 33.63% id in 223 aa, and to Escherichia coli, and Escherichia coli O6 hypothetical protein YbhL or B0786 or C0868 SWALL:YBHL_ECOLI (SWALL:P75768) (234 aa) fasta scores: E(): 3.7e-14, 32.43% id in 222 aa putative membrane protein	Putative uncharacterized protein	similar to BR0088, membrane protein, hypothetical hypothetical membrane protein	Putative uncharacterized protein gbs1653	Putative uncharacterized protein	Hypothetical protein JHP0854	identified by match to PFAM protein family HMM PF01027 membrane protein, putative	Stationary phase anti-death Family (SAD), acetate uptake	Conserved hypothetical integral membrane protein	Uncharacterized membrane protein SPy_0358/M5005_Spy0301	best blastp match gb|AAK33404.1| (AE006499) conserved hypothetical protein (putative membrane spanning protein) [Streptococcus pyogenes M1 GAS] conserved hypothetical protein	Similar to sp|Q9ZE15|Y147_RICPR rc||RC0189 sp|P75768|YBHL_ECOLI sp|Q9A2A3|Y0G3_CAUCR sp|O51489|Y539_BORBU; Ortholog to ERGA_CDS_09350 Conserved hypothetical protein	conserved family - putative integral membrane protein hypothetical protein	Putative transmembrane protein Conserved hypothetical protein	COG0670 integral membrane protein	Conserved hypothetical, predicted membrane protein (TMS7)	Putative permease	
CHLTR00840	Cell Division Protein FtsY	FtsY protein	Putative cell division protein	Similar to C-terminal part of signal recognition particle GTPase, FtsY hypothetical protein	conserved gene cell division membrane protein FtsY	Similar to C-terminal part of signal recognition particle GTPase, FtsY hypothetical protein	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 signal recognition particle-docking protein FtsY	Cell division protein FtsY	Cell division protein	Signal recognition particle GTPase, FtsY	identified by similarity to SP:P10121; match to protein family HMM PF00448; match to protein family HMM TIGR00064 signal recognition particle-docking protein FtsY	signal recognition particle-docking protein FtsY signal recognition particle GTPase	Cell division protein FtsY	FtsY cell division protein	Signal recognition particle-docking protein FtsY	Cell division protein FtsY	Signal recognition particle GTPase	Similar to Thermoanaerobacter tengcongensis signal recognition particle GTPase FtsY or TTE1464 SWALL:Q8R9W8 (EMBL:AE013104) (295 aa) fasta scores: E(): 1.3e-33, 37.81% id in 275 aa, and to The C-terminal domain of Escherichia coli cell division protein FtsY or B3464, similarity limited to the NG-domain where the GTPase activity is located SWALL:FTSY_ECOLI (SWALL:P10121) (497 aa) fasta scores: E(): 6.9e-33, 38.73% id in 284 aa putative cell division protein	Signal recognition particle-docking GTPase FtsY	Cell division protein ftsY homolog	Signal recognition particle-docking protein FtsY	Similar to sp|P44870|FTSY_HAEIN sp|O05948|FTSY_RICPR rc||ftsY; Ortholog to ERGA_CDS_08930 Cell division protein ftsY homolog	signal recognition particle	COG0552 FtsY signal recognition particle GTPase similar to NP_221126.1 cell division protein	Cell division protein FtsY	COG0552 signal recognition particle GTPase	Similar to Bacteroides thetaiotaomicron recognition particle-docking protein FtsY BT0914 SWALL:AAO76021 (EMBL:AE016929) (319 aa) fasta scores: E(): 7.4e-96, 96.23% id in 319 aa, and to Escherichia coli cell division protein FtsY or B3464 SWALL:FTSY_ECOLI (SWALL:P10121) (497 aa) fasta scores: E(): 5.5e-44, 52.31% id in 302 aa putative recognition particle-docking protein	Similar to Q9I6C1 Signal recognition particle receptor FtsY from Pseudomonas aeruginosa (455 aa). FASTA: opt: 1262 Z-score: 1403.4 E(): 2.8e-70 Smith-Waterman score: 1262; 61.935identity in 310 aa overlap signal recognition particle receptor FtsY	Cell division protein ftsY homolog	
CHLTR00841	Succinyl-CoA ligase [ADP-forming] subunit beta	Succinyl-CoA ligase [ADP-forming] subunit beta	SucC protein	Succinyl-CoA ligase [ADP-forming] subunit beta	Succinyl-CoA ligase [ADP-forming] subunit beta	succinyl-CoA synthetase, beta subunit	conserved gene succinyl CoA synthetase beta chain	succinyl-CoA synthetase, beta subunit	identified by similarity to EGAD:108441; match to protein family HMM PF00549; match to protein family HMM PF02222; match to protein family HMM TIGR01016 succinyl-CoA synthase, beta subunit	Succinyl-CoA ligase [ADP-forming] subunit beta	Succinyl-CoA ligase [ADP-forming] subunit beta	Succinyl-CoA synthetase beta chain	identified by similarity to SP:Q9KA20; match to protein family HMM PF00549; match to protein family HMM PF02222; match to protein family HMM TIGR01016 succinyl-CoA synthase, beta subunit	SucC	Succinyl-CoA synthetase beta subunit protein	Succinyl-CoA ligase [ADP-forming] subunit beta	Mb0976, sucC, len: 387 aa. Equivalent to Rv0951, len: 387 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 387 aa overlap). Probable sucC, succinyl-Coa synthetase, beta chain (EC 6.2.1.5), equivalent to AL035500|MLCL373_3|NP_301241.1|NC_002677 succinyl-CoA synthase [beta] chain from Mycobacterium leprae (393 aa), FASTA score: (86.7% identity in 391 aa overlap). Also highly similar to others e.g.  AB92671.1|AL356832 succinyl-CoA synthetase beta chain from Streptomyces coelicolor (394 aa); P25126|SUCC_THEFL SUCCINYL-COA SYNTHETASE BETA CHAIN from Thermus aquaticus (378 aa); P07460|SUCC_ECOLI succinyl-CoA synthetase beta chain from Escherichia coli (388 aa), FASTA scores: opt: 933, E(): 0, (41.0% identity in 390 aa overlap); etc. PROBABLE SUCCINYL-COA SYNTHETASE (BETA CHAIN) SUCC (SCS-BETA)	InterProMatches:IPR005809; Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolism (GO:0008152) succinyl-CoA synthetase (beta subunit)	succinyl-CoA synthetase beta subunit	Succinyl-CoA synthetase beta chain	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark succinyl-CoA synthetase beta subunit	Succinyl-CoA synthetase beta chain	IPR005809: Succinyl-CoA synthetase, beta subunit succinyl-CoA synthetase, beta subunit	Succinyl-CoA synthetase, beta subunit	similar to Salmonella typhi CT18 succinyl-CoA synthetase beta chain succinyl-CoA synthetase beta chain	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri succinyl-CoA synthetase beta chain SucC or B0728 or C0805 or Z0882 or ECS0753 or SF0569 or S0582 SWALL:SUCC_ECOLI (SWALL:P07460) (388 aa) fasta scores: E(): 8.3e-58, 44.53% id in 384 aa, and to Pseudomonas aeruginosa succinyl-CoA synthetase beta chain SucC or PA1588 SWALL:SUCC_PSEAE (SWALL:P53593) (388 aa) fasta scores: E(): 7.9e-60, 44.24% id in 382 aa succinyl-CoA synthetase beta chain	similar to BR1926, succinyl-CoA synthetase, beta subunit SucC, succinyl-CoA synthetase, beta subunit	Succinyl-CoA ligase [ADP-forming] subunit beta	Succinyl-CoA ligase [ADP-forming] subunit beta	
CHLTR00842	Succinyl-CoA ligase [ADP-forming] subunit alpha	Succinyl-CoA ligase [ADP-forming] subunit alpha	Succinyl-CoA ligase [ADP-forming] subunit alpha	Succinyl-CoA ligase [ADP-forming] subunit alpha	succinyl-CoA synthetase, alpha subunit	conserved gene succinyl CoA synthetase alpha chain	succinyl-CoA synthetase, alpha subunit	identified by similarity to SP:P80865; match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019 succinyl-CoA synthase, alpha subunit	identified by similarity to SP:P07459; match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019 succinyl-CoA synthase, alpha subunit	Succinyl-CoA ligase [ADP-forming] subunit alpha	Succinyl-CoA synthetase alpha chain	identified by similarity to SP:P07459; match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019 succinyl-CoA synthase, alpha subunit	Succinyl-CoA ligase [ADP-forming] subunit alpha	Succinyl-CoA ligase [ADP-forming] subunit alpha	Succinyl-CoA ligase [ADP-forming] subunit alpha	Mb0977, sucD, len: 303 aa. Equivalent to Rv0952, len: 303 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 303 aa overlap). Probable sucD, succinyl-CoA synthetase, alpha chain (EC 6.2.1.5), equivalent to AL035500|MLCL373_4|NP_301242.1|NC_002677 succinyl-CoA synthase [alpha] chain from Mycobacterium leprae (300 aa), FASTA score: (86.3% identity in 300 aa overlap). Also highly similar to others e.g.  CAB92672.1|AL356832 from Streptomyces coelicolor (294 aa); P53591|SUCD_COXBU from Escherichia coli (288 aa), FASTA scores: opt: 855, E(): 0, (53.8% identity in 286 aa overlap); etc. Contains PS00399 ATP-citrate lyase and succinyl-CoA ligases active site, and PS00017 ATP/GTP-binding site motif A (P-loop). PROBABLE SUCCINYL-COA SYNTHETASE (ALPHA CHAIN) SUCD (SCS-ALPHA)	InterProMatches:IPR005810; Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolism (GO:0008152) succinyl-CoA synthetase (alpha subunit)	succinyl-CoA synthetase alpha subunit	Succinyl-CoA ligase [ADP-forming] subunit alpha	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark succinyl-CoA synthetase alpha subunit	Succinyl-CoA ligase [ADP-forming] subunit alpha	IPR005810: Succinyl-CoA ligase, alpha subunit succinyl-CoA synthetase, alpha subunit	Succinyl-CoA synthetase, alpha subunit	similar to Salmonella typhi CT18 succinyl-CoA synthetase alpha chain succinyl-CoA synthetase alpha chain	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 succinyl-CoA synthetase alpha chain SucD or B0729 or C0806 or Z0883 or ECS0754 SWALL:SUCD_ECOLI (SWALL:P07459) (288 aa) fasta scores: E(): 2.8e-63, 60.35% id in 285 aa, and to Coxiella burnetii succinyl-CoA synthetase alpha chain SucD or CBU1396 SWALL:SUCD_COXBU (SWALL:P53591) (294 aa) fasta scores: E(): 2.4e-65, 63.34% id in 281 aa succinyl-CoA synthetase alpha chain	similar to BR1925, succinyl-CoA synthetase, alpha subunit SucD, succinyl-CoA synthetase, alpha subunit	Succinyl-CoA ligase [ADP-forming] subunit alpha	Succinyl-CoA ligase [ADP-forming] subunit alpha	succinyl-CoA synthetase (alpha subunit)	
CHLTR00843	Probable serine protease do-like	periplasmic serine protease Do; heat shock protein HtrA	conserved gene protease DO	periplasmic serine protease Do; heat shock protein HtrA	Serine protease DO-like protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark periplasmic protease	IPR001254: Peptidase S1, chymotrypsin family; IPR001478: PDZ/DHR/GLGF domain; IPR001940: Peptidase S1C, HtrA/DegQ protease serine endoprotease	similar to Salmonella typhi CT18 serine protease serine protease	Similar to Escherichia coli, and Escherichia coli O157:H7 protease Do precursor DegP or HtrA or Ptd or B0161 or Z0173 or ECS0165 SWALL:DEGP_ECOLI (SWALL:P09376) (474 aa) fasta scores: E(): 3.9e-48, 37.65% id in 494 aa, and to Chlorobium tepidum serine protease CT1447 SWALL:Q8KCH4 (EMBL:AE012902) (505 aa) fasta scores: E(): 3.3e-60, 41.44% id in 444 aa putative heat shock-related exported protease	Serine protease	Periplasmic serine protease DO	Similar to sp|Q92JA1|DEGP_RICCN sp|O05942|DEGP_RICPR; Ortholog to ERGA_CDS_08430 Probable serine protease do-like precursor	conserved family - putative serine protease hypothetical protein	typically periplasmic; COG0265 trypsin-like serine protease	endopeptidase DegP	Similar to Rhizobium loti serine protease, HtrA/DegQ/DegS family MLL5022 SWALL:Q98CS8 (EMBL:AP003005) (513 aa) fasta scores: E(): 6.2e-35, 32.75% id in 519 aa, and to Escherichia coli, and Escherichia coli O157:H7 protease DO precursor DegP or HtrA or Ptd or B0161 or Z0173 or ECS0165 SWALL:DEGP_ECOLI (SWALL:P09376) (474 aa) fasta scores: E(): 8.3e-30, 39.79% id in 392 aa putative heat shock-related protease	contains two C-terminal PDZ domains Periplasmic trypsin-like serine protease	Serine endoprotease	identified by similarity to SP:P09376; match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 serine protease DegP	periplasmic serine protease do	probable periplasmic serine protease DO-like precursor	Serine protease Do	Similar to sp|Q92JA1|DEGP_RICCN sp|O05942|DEGP_RICPR; Ortholog to ERWE_CDS_08520 Probable serine protease do-like precursor	ortholog to Escherichia coli bnum: b3234; MultiFun: Metabolism 1.2.3 serine protease	Peptidase S1 and S6, chymotrypsin/Hap:PDZ/DHR/GLGF	Peptidase S1 and S6, chymotrypsin/Hap:PDZ/DHR/GLGF	Peptidase S1C, Do	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 8576051, 8830688; Product type e : enzyme periplasmic serine endoprotease	Peptidase S1C, Do	
CHLTR00844	Zinc Metalloprotease	Similar to Deinococcus radiodurans metalloprotease, putative DR0617 SWALL:Q9RWP9 (EMBL:AE001919) (996 aa) fasta scores: E(): 9.6e-91, 32.88% id in 970 aa, and to Clostridium tetani zn-dependent peptidase, insulinase family CTC00810 SWALL:Q897D0 (EMBL:AE015938) (973 aa) fasta scores: E(): 6.6e-80, 29.96% id in 988 aa putative metalloprotease	Hypothetical protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pe : putative enzyme putative metalloprotease	similar to cytosolic metalloprotease; possible role in pyruvate metabolism; Cym1p (GI:6320639) (Saccharomyces cerevisiae) similar to metalloprotease MP1 (GI:3779244) (Homo sapiens); go_function: metalloendopeptidase activity [goid 0004222]; go_process: pyruvate metabolism [goid 0006090]; go_process: proteolysis and peptidolysis [goid 0006508] pitrilysin family metalloprotease (Cym1), putative	go_component: mitochondrion [goid 0005739]; go_function: metalloendopeptidase activity [goid 0004222]; go_process: proteolysis and peptidolysis [goid 0006508] pitrilysin-like metalloprotease	Peptidase M16-like	Metalloprotease	pitrilysin metallopeptidase 1 [Source:HGNC Symbol;Acc:17663]	peptidase M16-like	transcript_id=ENSOCUT00000011054	predicted Zn-dependent peptidase, insulinase-like COG1026	Peptidase M16C associated PFAM: peptidase M16-like: (1.2e-13) Peptidase M16C associated: (1.1e-90) KEGG: dra:DR0617 metalloprotease, putative, ev=0.0, 75% identity	insulinase family metalloproteinase	transcript_id=ENSGACT00000023279	peptidase, putative identified by match to protein family HMM PF00675; match to protein family HMM PF05193	predicted Zn-dependent peptidases, insulinase-like	putative metalloprotease	Peptidase M16-like	Hypothetical protein	putative peptidase identified by match to protein family HMM PF00675; match to protein family HMM PF05193	transcript_id=ENSFCAT00000003238	metalloprotease, insulinase family	Zn-dependent peptidase, insulinase family identified by match to protein family HMM PF00675; match to protein family HMM PF05193	Peptidase M16C associated domain protein PFAM: peptidase M16 domain protein; Peptidase M16C associated domain protein KEGG: noc:Noc_2076 peptidase M16-like	Peptidase M16C associated domain protein PFAM: peptidase M16 domain protein; Peptidase M16C associated domain protein KEGG: noc:Noc_2076 peptidase M16-like	peptidase, M16 family	Presequence protease, mitochondrial Precursor (hPreP)(EC 3.4.24.-)(Pitrilysin metalloproteinase 1)(Metalloprotease 1)(hMP1) [Source:UniProtKB/Swiss- Prot;Acc:Q5JRX3]	
CHLTR00845	DNA recombination protein rmuC homolog	Similar to conserved hypothetical protein hypothetical protein	conserved gene transmembrane protein	Similar to conserved hypothetical protein hypothetical protein	RmuC family protein	identified by similarity to GB:BAB51420.1; match to protein family HMM PF02646 RmuC domain protein	Probable periplasmic protein	conserved hypothetical protein	DNA recombination protein rmuC homolog	Conserved hypothetical transmembrane protein	Putative uncharacterized protein	Putative uncharacterized protein yuaB	DNA recombination protein rmuC homolog	Similar to Zymomonas mobilis DNA recombination protein RmuC homolog SWALL:RMUC_ZYMMO (SWALL:Q9REQ3) (448 aa) fasta scores: E(): 1e-18, 30.3% id in 363 aa, and to Haemophilus influenzae DNA recombination protein homolog RmuC or HI0500 SWALL:RMUC_HAEIN (SWALL:P44733) (450 aa) fasta scores: E(): 1.3e-10, 26.92% id in 364 aa putative DNA recombination protein	Putative uncharacterized protein	similar to BRA1036, conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein gbs1817	Putative uncharacterized protein	identified by Glimmer2; putative conserved hypothetical protein	Putative uncharacterized protein	best blastp match gb|AAK33341.1| (AE006493) conserved hypothetical protein [Streptococcus pyogenes M1 GAS] conserved hypothetical protein	Similar to sp|Q9I4U3|RMUC_PSEAE sp|P27850|RMUC_ECOLI; Ortholog to ERGA_CDS_04640 DNA recombination protein rmuC homolog	conserved family - putative RmuC recombination protein hypothetical protein	Conserved hypothetical protein	rmuC homolog; COG1322 DNA recombination protein	Similar to: HI0500, RMUC_HAEIN DNA recombination protein RmuC	Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT0637 SWALL:Q8AA28 (EMBL:AE016928) (409 aa) fasta scores: E(): 7.8e-117, 90.46% id in 409 aa, and to Xylella fastidiosa DNA recombination protein homolog RmuC or XF0413 SWALL:RMUC_XYLFA (SWALL:Q9PG89) (456 aa) fasta scores: E(): 2.6e-50, 44.72% id in 398 aa putative DNA recombination-related protein	Putative uncharacterized protein	Similar to Q87TH5 Conserved hypothetical protein from Vibrio parahaemolyticus (514 aa). FASTA: opt: 1129 Z-score: 1083.4 E(): 1.9e-52 Smith-Waterman score: 1132; 42.000 identity in 450 aa overlap ORF ftt0659 DNA recombination protein RmuC family protein	
CHLTR00846	CDP-diacylglycerol-serine-O- phosphatidyltransferase	conserved gene CDP-diacylglycerol-serine-O- phosphatidyltransferase	similar to CDP-diacylglycerol-serine O-phosphatidyltransferase (Phosphatidylserine synthase) hypothetical protein	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 CDP-diacylglycerol--serine O-phosphatidyltransferase	Phosphatidyltransferase	identified by similarity to SP:Q48269; match to protein family HMM PF01066; match to protein family HMM TIGR00473 CDP-diacylglycerol--serine O-phosphatidyltransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark phosphatidylserine synthase	Similar to Fusobacterium nucleatum CDP-diacylglycerol--serine O-phosphatidyltransferase FN0991 SWALL:Q8REU8 (EMBL:AE010606) (261 aa) fasta scores: E(): 4.1e-13, 31.27% id in 259 aa, and to Bacteroides thetaiotaomicron CDPp-diacylglycerol--serine O-phosphatidyltransferase BT2232 SWALL:Q8A5K7 (EMBL:AE016935) (235 aa) fasta scores: E(): 5.8e-10, 28.01% id in 257 aa putative phospholipid biosynthesis-related membrane protein	Phosphatidylserine synthase	CDP-diacylglycerol--serine O- phosphatidyltransferase	CDP-diacylglycerol--serine O- phosphatidyltransferase	Phosphatidylserine synthase	CDP-diacylglycerol-serine O-phosphatidyltransferase	phosphatidylserine synthase	Phosphatidyserine synthase	CDP-diacylglycerol--serine O-phosphatidyltransferase	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 CDP-diacylglycerol--serine O-phosphatidyltransferase	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 CDP-diacylglycerol--serine O-phosphatidyltransferase	CDP-diacylglycerol--serine O-phosphatidyltransferase	CDP-diacylglycerol--serine O-phosphatidyltransferase	CDP-diacylglycerol--serine O-phosphatidyltransferase	CDP-diacylglycerol-serine O-phosphatidyltransferase	Citation: PMID: 8824831 Biosci Biotechnol Biochem.  1996 Jan;60(1):111-6. CDP-alcohol phosphatidyltransferase	CDP-diacylglycerol--serine O-phosphatidyltransferase	CDP-diacylglycerol--serine O-phosphatidyltransferase	CDP-diacylglycerol--serine O-phosphatidyltransferase	CDP-diacylglycerol--serine O-phosphatidyltransferase	CDP-diacylglycerol--serine O-phosphatidyltransferase	CDP-diacylglycerol--serine O-phosphatidyltransferase	
CHLTR00847	Ribonucleoside-diphosphate reductase subunit alpha	Ribonucleoside-diphosphate reductase	similar to ribonucleoside-diphosphate reductase, alpha subunit hypothetical protein	conserved gene ribonucleoside-diphosphate reductase, alpha subunit	similar to ribonucleoside-diphosphate reductase, alpha subunit hypothetical protein	Ribonucleoside-diphosphate reductase	Ribonucleoside-diphosphate reductase	identified by similarity to GP:15290502; match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM PF03477 ribonucleoside-diphosphate reductase, alpha subunit	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ribonucleoside-diphosphate reductase alpha chain	Similar to Nitrosomonas europaea ribonucleotide reductase large subunit NrdA or NE2423 SWALL:Q82SC1 (EMBL:BX321864) (955 aa) fasta scores: E(): 9.2e-190, 52.94% id in 933 aa, and to Pseudomonas aeruginosa ribonucleoside reductase, large chain NrdA or PA1156 SWALL:Q9I4I1 (EMBL:AE004545) (963 aa) fasta scores: E(): 3.3e-188, 52.24% id in 936 aa putative ribonucleotide reductase large subunit	Ribonucleoside-diphosphate reductase	Ribonucleoside-diphosphate reductase	Ribonucleoside-diphosphate reductase alpha subunit	identified by similarity to GP:15290502 ribonucleoside-diphosphate reductase, alpha subunit	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme ribonucleoside diphosphate reductase, alpha subunit	Ribonucleoside-diphosphate reductase	Similar to Treponema pallidum ribonucleoside-diphosphate reductase alpha chain NrdA or TP1008 SWALL:RIR1_TREPA (SWALL:O83972) (845 aa) fasta scores: E(): 8.5e-217, 63.78% id in 845 aa, and to Escherichia coli ribonucleoside-diphosphate reductase 2 alpha chain NrdE or B2675 SWALL:RIR3_ECOLI (SWALL:P39452) (713 aa) fasta scores: E(): 3e-38, 29.27% id in 731 aa putative ribonucleoside-diphosphate reductase alpha chain	Ribonucleotide reductase alpha subunit NrdA protein	Ribonucleoside-diphosphate reductase	Similar to White spot syndrome virus ribonucleotide reductase large subunit rr1 SWALL:Q91PK3 (EMBL:AF132669) (848 aa) fasta scores: E(): 3.8e-74, 32.54% id in 799 aa, and to Trypanosoma brucei brucei ribonucleoside-diphosphate reductase large chain Rnr1 SWALL:RIR1_TRYBB (SWALL:O15909) (838 aa) fasta scores: E(): 1.4e-73, 32.9% id in 778 aa ribonucleotide-diphosphate reductase large chain	go_component: cytoplasm [goid 0005737]; go_component: ribonucleoside-diphosphate reductase complex [goid 0005971]; go_function: ribonucleoside-diphosphate reductase activity [goid 0004748]; go_process: DNA replication [goid 0006260]; go_process: deoxyribonucleoside diphosphate metabolism [goid 0009186]; go_process: programmed cell death [goid 0012501] ribonucleotide reductase large subunit (Rnr1), putative	Oxygen-sensitive ribonucleotide reductase, alpha subunit fused to ATP-cone domains	Hypothetical ribonucleotide reductase alpha subunit	identified by match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM PF03477; match to protein family HMM TIGR02506 ribonucleoside-diphosphate reductase, alpha subunit	identified by similarity to GB:CAC17629.1; match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM PF03477; match to protein family HMM TIGR02506 ribonucleoside-diphosphate reductase, alpha chain	Ribonucleoside-diphosphate reductase	Ribonucleoside-diphosphate reductase	ribonucleoside-diphosphate reductase	ribonucleotide reductase large subunit	
CHLTR00848	Ribonucleoside-diphosphate reductase subunit beta	Ribonucleotide reductase	Putative transmembrane ribonucleoside reductase (Small chain) oxidoreductase protein	Ribonucleoside-diphosphate reductase 1 beta chain	Similar to ribonucleoside-diphosphate reductase, beta subunit hypothetical protein	conserved gene ribonucleoside-diphosphate reductase, beta subunit	Similar to ribonucleoside-diphosphate reductase, beta subunit hypothetical protein	identified by similarity to EGAD:37758; match to protein family HMM PF00268 ribonucleoside-diphosphate reductase 2, beta subunit	Ribonucleoside-diphosphate reductase system	Ribonucleoside-diphosphate reductase minor subunit	Ribonucleoside-diphosphate reductase subunit beta	Mb2003c, nrdF1, len: 322 aa. Equivalent to Rv1981c, len: 322 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 322 aa overlap). nrdF1, ribonucleoside-diphosphate reductase, beta chain (EC 1.17.4.1) (see citation below), highly similar to others e.g. RIR4_SALTY|P17424 ribonucleoside-diphosphate reductase (319 aa), FASTA scores: opt: 1402, E(): 0, (66.0% identity in 315 aa overlap); etc. Also similar to Rv3048c|MTV012.63c from Mycobacterium tuberculosis.  Contains PS00368 Ribonucleotide reductase small subunit signature. BELONGS TO THE RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE SMALL CHAIN FAMILY. COFACTOR: BINDS 2 IRON IONS (BY SIMILARITY). Note that previously known as nrdF. RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF1 (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ribonucleoside-diphosphate reductase beta chain	Ribonucleoside-diphosphate reductase, beta subunit	IPR000358: Ribonucleotide reductase ribonucleoside-diphosphate reductase 1, beta subunit	similar to Salmonella typhi CT18 ribonucleoside-diphosphate reductase 1 beta chain ribonucleoside-diphosphate reductase 1 beta chain	Similar to Nitrosomonas europaea ribonucleotide reductase NrdB or NE2422 SWALL:Q82SC2 (EMBL:BX321864) (382 aa) fasta scores: E(): 3e-85, 59.71% id in 350 aa, and to Pseudomonas aeruginosa ribonucleoside reductase, small chain NrdB or PA1155 SWALL:Q9I4I2 (EMBL:AE004545) (415 aa) fasta scores: E(): 1.4e-82, 58.26% id in 345 aa, and to Helicobacter pylori ribonucleoside-diphosphate reductase beta chain NrdB or HP0364 SWALL:RIR2_HELPY (SWALL:P55983) (341 aa) fasta scores: E(): 1.6e-24, 30.9% id in 343 aa.  Note: Possible alternative start at codon 4 putative ibonucleoside reductase small subunit	Ribonucleoside-diphosphate reductase beta chain	Ribonucleoside-diphosphate reductase 1 beta chain	Similar to rc||nrdB sp|O84835|RIR2_CHLTR sp|Q9PL92|RIR2_CHLMU; Ortholog to ERGA_CDS_03290 Ribonucleoside-diphosphate reductase beta chain	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme ribonucleoside-diphosphate reductase, beta subunit	Ribonucleoside-diphosphate reductase, beta subunit	COG0208 ribonucleotide reductase beta subunit	ribonucleoside-diphosphate reductase beta chain	ribonucleotide reductase small subunit; Similar to: HI1660, RIR2_HAEIN ribonucleoside-diphosphate reductase beta chain	Ribonucleotide reductase beta subunit NrdF protein	Ribonucleoside reductase, beta subunit	Similar to (glutaredoxin 3) Q8ZJM8 Glutaredoxin 3 from Yersinia pestis (82 aa). FASTA: opt: 181 Z-score: 263.7 E(): 8.5e-07 Smith-Waterman score: 181; 40.260 identity in 77 aa overlap,(ribonucleoside-diphosphate reductase) Q8QYZ8 Ribonucleoside-diphosphate reductase, beta subunit-like protein from Rana tigrina ranavirus (387 aa). FASTA: opt: 1124 Z-score: 1382.6 E(): 4.1e-69 Smith-Waterman score: 1124; 51.703 identity in 323 aa overlap Biofunctional protein, glutaredoxin 3 protein/Ribonucleoside-diphosphate reductase, beta subunit	
CHLTR00849	tRNA (guanine-N(7)-)-methyltransferase	tRNA (guanine-N(7)-)-methyltransferase	identified by match to protein family HMM PF02390; match to protein family HMM TIGR00091 tRNA (guanine-N(7)-)-methyltransferase	tRNA (m(7)G46) methyltransferase	conserved hypothetical protein, methyltransferase	tRNA (guanine-N(7)-)-methyltransferase	tRNA (guanine-N(7)-)-methyltransferase	conserved protein; Molecular Function: methyltransferase activity (GO:0008168), Molecular Function: transporter activity (GO:0005215), Biological Process: transport (GO:0006810) putative methyltransferase YtmQ	tRNA (guanine-N(7)-)-methyltransferase	methyl transferase putative methlytransferase	tRNA (guanine-N(7)-)-methyltransferase	Similar to Streptococcus mutans tRNA(guanine-N(7)-)-methyltransferase SMU.416 SWALL:TRMB_STRMU (SWALL:Q8DVQ4) (211 aa) fasta scores: E(): 6.2e-15, 27.31% id in 205 aa, and to Bacillus subtilis tRNA(guanine-N(7)-)-methyltransferase YtmQ SWALL:TRMB_BACSU (SWALL:O34522) (213 aa) fasta scores: E(): 1.7e-12, 28.49% id in 179 aa putative tRNA(guanine-N(7)-)-methyltransferase	tRNA (guanine-N(7)-)-methyltransferase	conserved hypothetical protein	identified by Glimmer2; putative conserved hypothetical protein TIGR00091	Hypothetical protein	Ortholog of S. aureus MRSA252 (BX571856) SAR1833 putative methyltransferase	conserved hypothetical protein	tRNA (guanine-N(7)-)-methyltransferase	best blastp match sp|P58090|MT04_STRPY HYPOTHETICAL METHLYTRANSFERASE SPY1726 putative methyltransferase	identified by match to protein family HMM PF02390; match to protein family HMM TIGR00091 tRNA (guanine-N(7)-)-methyltransferase	Conserved hypothetical protein	COG0220 S-adenosylmethionine-dependent methyltransferase	Predicted methyltransferase	conserved hypothetical protein, methyltransferase	identified by match to protein family HMM PF02390; match to protein family HMM TIGR00091 tRNA (guanine-N(7)-)-methyltransferase	tRNA (Guanine46-N7-)-methyltransferase	tRNA (guanine-N7-)-methyltransferase	hypothetical protein, similar to SAM-dependent methyltransferase	
CHLTR00851	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	conserved gene UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	identified by similarity to SP:P18579; match to protein family HMM PF01565; match to protein family HMM PF02873; match to protein family HMM TIGR00179 UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	InterProMatches:IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark UDP-N-acetylpyruvoylglucosamine reductase	MurB COG0812 UDP-N-acetylmuramate dehydrogenase udp-n-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylmuramate dehydrogenase	Similar to Streptococcus pneumoniae, and Streptococcus pneumoniae UDP-N-acetylenolpyruvoylglucosamine reductase MurB or SP1390 or SPR1247 SWALL:MURB_STRPN (SWALL:Q97Q41) (316 aa) fasta scores: E(): 5.6e-33, 38.67% id in 287 aa, and to Bacillus subtilis UDP-N-acetylenolpyruvoylglucosamine reductase MurB SWALL:MURB_BACSU (SWALL:P18579) (303 aa) fasta scores: E(): 8.4e-30, 37.58% id in 282 aa putative UDP-N-acetylenolpyruvoylglucosamine reductase	similar to BR1429, UDP-N-acetylenolpyruvoylglucosamine reductase MurB, UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding	COG0812 MurB UDP-N-acetylmuramate dehydrogenase UDP-N-acetylenolpyruvoylglucosamine reductase	COG0812 UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	Similar to Escherichia coli UDP-N-acetylenolpyruvoylglucosamine reductase MurB or B3972 SWALL:MURB_ECOLI (SWALL:P08373) (342 aa) fasta scores: E(): 6.3e-43, 43.07% id in 332 aa, and to Pseudomonas aeruginosa UDP-N-acetylenolpyruvoylglucosamine reductase MurB or PA2977 SWALL:MURB_PSEAE (SWALL:Q9HZM7) (339 aa) fasta scores: E(): 3.3e-50, 44.34% id in 336 aa UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	
CHLTR00850	Putative rRNA methylase	Methyltransferase	identified by similarity to OMNI:SA1811 conserved hypothetical protein	SAM-dependent methyltransferase	rRNA methylase (SAM-dependent methyltransferase superfamily), putative	Hypothetical protein	SAM (and some other nucleotide) binding motif; Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757) conserved protein YtqB	S-adenosylmethionine (SAM)-dependent methyltransferase	Putative uncharacterized protein yxfB	Pseudogene. Similar to Oceanobacillus iheyensis hypothetical conserved protein OB2308 SWALL:Q8EP11 (EMBL:AP004600) (191 aa) fasta scores: E(): 2.7e-14, 31.35% id in 185 aa, and to Neisseria meningitidis hypothetical protein NMB0747 SWALL:Q9K071 (EMBL:AE002429) (188 aa) fasta scores: E(): 1.7e-12, 33.51% id in 188 aa. Note contains a frameshift after residue 118 pseudo conserved hypothetical protein (pseudogene)	Putative uncharacterized protein gbs1470	conserved hypothetical protein	identified by Glimmer2; putative conserved hypothetical protein	Hypothetical protein	Ortholog of S. aureus MRSA252 (BX571856) SAR1846 conserved hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	best blastp match gb|AAK33419.1| (AE006500) conserved hypothetical protein [Streptococcus pyogenes M1 GAS] conserved hypothetical protein	identified by similarity to OMNI:NTL01BH3288 conserved hypothetical protein	Conserved hypothetical protein	rRNA methylase (SAM-dependent methyltransferase superfamily), putative	SAM-dependent methyltransferase, MraW methylase family	hypothetical protein, similar to SAM-dependent methyltransferase	Similar to Bacillus halodurans hypothetical protein BH3285 TR:Q9K7S4 (EMBL:AP001518) (190 aa) fasta scores: E(): 2.1e-31, 52.381% id in 189 aa, and to Bacillus subtilis hypothetical protein YtqB TR:O34614 (EMBL:AF008220) (194 aa) fasta scores: E(): 1.2e-30, 51.596% id in 188 aa conserved hypothetical protein	identified by similarity to GB:BAC14264.1; match to protein family HMM PF06962 conserved hypothetical protein	SAM-dependent methyltransferase	identified by similarity to OMNI:NTL01BH3288; match to protein family HMM PF06962 conserved hypothetical protein	similar to gi|27468352|ref|NP_764989.1| [Staphylococcus epidermidis ATCC 12228], percent identity 67 in 186 aa, BLASTP E(): 4e-70 conserved hypothetical protein	identified by similarity to OMNI:NTL01LM1654; match to protein family HMM PF06962 conserved hypothetical protein	
CHLTR00852	N utilization substance protein B homolog	identified by similarity to SP:P04381; match to protein family HMM PF01029; match to protein family HMM TIGR01951 N utilization substance protein B	N utilization substance protein B	NusB antitermination factor	N utilization protein B	NusB antitermination factor	NusB antitermination factor TIGRFAM: transcription antitermination factor NusB PFAM: NusB/RsmB/TIM44 KEGG: plt:Plut_1679 NusB antitermination factor	N utilization substance protein B	NusB antitermination factor	N utilization substance protein B	NusB antitermination factor	NusB antitermination factor	Antitermination protein	NusB antitermination factor	Antitermination protein	NusB antitermination factor TIGRFAM: transcription antitermination factor NusB PFAM: NusB/RsmB/TIM44 KEGG: plt:Plut_1679 NusB antitermination factor	N utilization substance protein B homolog	NusB antitermination factor	NusB antitermination factor	NusB antitermination factor	NusB	Transcription antitermination protein NusB	Antitermination protein	Transcription antitermination factor NusB	NusB antitermination factor	
CHLTR00853	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	ATT start codon Translation initiation factor IF-3	conserved gene translational initiation factor IF-3	ATT start codon Translation initiation factor IF-3	Translation initiation factor IF-3	identified by match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168 translation initiation factor IF-3	Translation initiation factor IF-3	IF-3 Translation Initiation Factor 3	translation initiation factor IF-3	identified by similarity to SP:O33567 translation initiation factor IF-3	Translation initiation factor IF-3	translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	identified by similarity to SP:P55872; match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168 translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Mb1668, infC, len: 201 aa. Equivalent to Rv1641, len: 201 aa, from Mycobacterium tuberculosis strain H37Rv, (99.5% identity in 201 aa overlap). Probable infC, initiation factor IF-3, similar to many e.g.  IF3_BACST|P03000 initiation factor IF-3 from Bacillus stearothermophilus (171 aa), FASTA scores: opt: 560, E(): 1.9e-27, (50.6% identity in 166 aa overlap). Note that an AUC initiation codon has been used, the Bacillus (IF3_BACSU) and Escherichia coli (IF3_ECOLI) proteins use an AUU initiation codon, and the Myxococcus xanthus (DSG_MYXXA) homolog uses a AUC. BELONGS TO THE IF-3 FAMILY. PROBABLE INITIATION FACTOR IF-3 INFC	InterProMatches:IPR001288; Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413) initiation factor IF-3	translation initiation factor IF-3	Translation initiation factor IF-3	
CHLTR00853	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	ATT start codon Translation initiation factor IF-3	conserved gene translational initiation factor IF-3	ATT start codon Translation initiation factor IF-3	Translation initiation factor IF-3	identified by match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168 translation initiation factor IF-3	Translation initiation factor IF-3	IF-3 Translation Initiation Factor 3	translation initiation factor IF-3	identified by similarity to SP:O33567 translation initiation factor IF-3	Translation initiation factor IF-3	translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	identified by similarity to SP:P55872; match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168 translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Mb1668, infC, len: 201 aa. Equivalent to Rv1641, len: 201 aa, from Mycobacterium tuberculosis strain H37Rv, (99.5% identity in 201 aa overlap). Probable infC, initiation factor IF-3, similar to many e.g.  IF3_BACST|P03000 initiation factor IF-3 from Bacillus stearothermophilus (171 aa), FASTA scores: opt: 560, E(): 1.9e-27, (50.6% identity in 166 aa overlap). Note that an AUC initiation codon has been used, the Bacillus (IF3_BACSU) and Escherichia coli (IF3_ECOLI) proteins use an AUU initiation codon, and the Myxococcus xanthus (DSG_MYXXA) homolog uses a AUC. BELONGS TO THE IF-3 FAMILY. PROBABLE INITIATION FACTOR IF-3 INFC	InterProMatches:IPR001288; Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413) initiation factor IF-3	translation initiation factor IF-3	Translation initiation factor IF-3	
CHLTR00854	50S ribosomal protein L35	50S ribosomal protein L35	50S ribosomal protein L35	identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 ribosomal protein L35	50S ribosomal protein L35	50S ribosomal protein L35	50S ribosomal protein L35	50S ribosomal protein L35	InterProMatches:IPR001706; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein L35	50S ribosomal protein L35	50S ribosomal protein L35	IPR001706: Ribosomal protein L35 50S ribosomal protein L35	similar to Salmonella typhi CT18 50S ribosomal subunit protein L35 50S ribosomal subunit protein L35	Similar to Escherichia coli, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri 50S ribosomal protein L35 SWALL:RL35_ECOLI (SWALL:P07085) (64 aa) fasta scores: E(): 3.7e-05, 41.07% id in 56 aa, and to Clostridium acetobutylicum 50s ribosomal protein l35 RpmI or CAC2360 SWALL:RL35_CLOAB (SWALL:Q97GK6) (65 aa) fasta scores: E(): 5.5e-07, 46.77% id in 62 aa 50S ribosomal protein L35	50S ribosomal protein L35	50S ribosomal protein L35	identified by match to PFAM protein family HMM PF01632 ribosomal protein L35	Ortholog of S. aureus MRSA252 (BX571856) SAR1759 50S ribosomal protein L35	50S ribosomal protein L35	best blastp match gb|AAK33742.1| (AE006531) 50S ribosomal protein L35 [Streptococcus pyogenes M1 GAS] 50S ribosomal protein L35	identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 ribosomal protein L35	50S ribosomal protein L35	50S Ribosomal protein L35	LSU ribosomal protein L35P	Similar to Bacillus subtilis 50S ribosomal protein L35 RpmI or BSU28860 SWALL:RL35_BACSU (SWALL:P55874) (65 aa) fasta scores: E(): 8.1e-10, 50% id in 62 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L35 BT0424 SWALL:Q8AAP0 (EMBL:AE016927) (65 aa) fasta scores: E(): 2.8e-25, 98.46% id in 65 aa, and to Porphyromonas gingivalis W83 ribosomal protein L35 RpmI or PG0990 SWALL:AAQ66113 (EMBL:AE017175) (65 aa) fasta scores: E(): 1e-16, 70.76% id in 65 aa putative 50S ribosomal protein L35	Ribosomal protein L35	50S ribosomal protein L35	50S ribosomal protein L35	ribosomal protein L35 (50S ribosomal protein L35)	
CHLTR00855	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50s ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	conserved gene 50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	identified by match to protein family HMM PF00453; match to protein family HMM TIGR01032 ribosomal protein L20	50S ribosomal protein L20	LSU ribosomal protein L20P	50S ribosomal protein L20	identified by similarity to SP:P02421; match to protein family HMM PF00453; match to protein family HMM TIGR01032 ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	identified by similarity to SP:P13070; match to protein family HMM PF00453; match to protein family HMM TIGR01032 ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	Mb1670, rplT, len: 129 aa. Equivalent to Rv1643, len: 129 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 129 aa overlap). rplT, 50S ribosomal protein L20, similar to several e.g. RL20_ECOLI|P02421 from Escherichia coli (117 aa), FASTA scores: opt: 438, E(): 5.8e-24, (60.3% identity in 116 aa overlap). Contains PS00937 Ribosomal protein L20 signature. 50S ribosomal protein L20 rplT	InterProMatches:IPR005812; Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006 ribosomal protein L20	
CHLTR00856	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase, alpha subunit	conserved gene phenylalanyl tRNA synthetase, alpha subunit	Phenylalanyl-tRNA synthetase, alpha subunit	Phenylalanyl-tRNA synthetase alpha chain	identified by match to protein family HMM PF01409; match to protein family HMM PF02912; match to protein family HMM TIGR00468 phenylalanyl-tRNA synthetase, alpha subunit	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	phenylalanyl-tRNA synthetase alpha chain	identified by match to protein family HMM PF01409; match to protein family HMM PF02912; match to protein family HMM TIGR00468 phenylalanyl-tRNA synthetase, alpha subunit	Phenylalanyl-tRNA synthetase alpha chain	phenylalanyl-tRNA synthetase alpha subunit	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	identified by similarity to SP:P08312; match to protein family HMM PF01409; match to protein family HMM PF02912; match to protein family HMM TIGR00468 phenylalanyl-tRNA synthetase, alpha subunit	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase	Phenylalanyl-tRNA synthetase alpha chain	Mb1676, pheS, len: 341 aa. Equivalent to Rv1649, len: 341 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 341 aa overlap). pheS, Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20), similar to several e.g. SYFA_ECOLI|P08312 from Escherichia coli (327 aa), FASTA scores: opt: 978, E(): 0, (46.5% identity in 331 aa overlap). Homology suggests this start site, but there is a potential rbs upstream of a gtg 30 bp upstream; contains PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1. BELONGS TO CLASS-II AMINOACYL-TRNA SYNTHETASE FAMILY. PHE-TRNA SYNTHETASE ALPHA CHAIN SUBFAMILY 1. Phenylalanyl-tRNA synthetase, alpha chain pheS	InterProMatches:IPR004529; Molecular Function: phenylalanine-tRNA ligase activity (GO:0004826), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: phenylalanyl-tRNA aminoacylation (GO:0006432) phenylalanyl-tRNA synthetase (alpha subunit)	
CHLTR00858	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative membrane transport protein precursor	Putative membrane transport protein precursor	Permease YjgP/YjgQ family protein precursor	Putative membrane transport protein	
CHLTR00857	Putative uncharacterized protein	calcium binding EF-hand protein precursor	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00859	Putative uncharacterized protein	conserved hypothetical protein	predicted permease	Putative membrane transport protein precursor	Putative membrane transport protein precursor	Putative membrane transport protein	
CHLTR00860	tRNA(Ile)-lysidine synthase	identified by match to protein family HMM PF01171 PP-loop family protein	tRNA(Ile)-lysidine synthase	Similar to Streptococcus agalactiae MesJ/Ycf62 family protein SAG0014 SWALL:Q8E2H4 (EMBL:AE014191) (424 aa) fasta scores: E(): 1.8e-16, 32.75% id in 232 aa, and to Lactobacillus plantarum cell cycle protein MesJ or LP_0545 SWALL:Q88Z33 (EMBL:AL935253) (448 aa) fasta scores: E(): 1.1e-15, 27.79% id in 295 aa conserved hypothetical protein	tRNA(Ile)-lysidine synthase	tRNA(Ile)-lysidine synthase MesJ	cell cycle protein MesJ	PP-loop	Aromatic amino acid beta-eliminating lyase/threonine aldolase precursor	similar to gi|27469192|ref|NP_765829.1| [Staphylococcus epidermidis ATCC 12228], percent identity 46 in 432 aa, BLASTP E(): e-121 conserved hypothetical protein	tRNA(Ile)-lysidine synthetase identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432	PP-loop	tRNA(Ile)-lysidine synthetase identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432	tRNA(Ile)-lysidine synthetase-like	MesJ protein	PP-loop superfamily ATPase	MesJ protein	possible MesJ-like	hypothetical protein	tRNA(Ile)-lysidine synthetase TIGRFAM: tRNA(Ile)-lysidine synthetase PFAM: PP-loop domain protein KEGG: cch:Cag_1746 MesJ protein	tRNA(Ile)-lysidine synthetase-like	tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432	tRNA(Ile)-lysidine synthetase identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432	TRNA(Ile)-lysidine synthetase	tRNA(Ile)-lysidine synthetase, MesJ	TRNA(Ile)-lysidine synthetase precursor	conserved hypothetical protein Function unclear	TilS tRNA(Ile)-lysidine synthetase	tRNA(Ile)-lysidine synthetase identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432	
CHLTR00861	ATP-dependent zinc protease	cell division related ATP-dependent zinc proteinase Clp EC 3.4.21.92	FtsH cell division protein	Cell division protein precursor	Cell division protein precursor	Cell division protein	
CHLTR00862	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polynucleotide phosphorylase (PNPase)	conserved gene polyribonucleotide nucleotidyltransferase	Polynucleotide phosphorylase (PNPase)	identified by similarity to SP:P50849; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	polyribonucleotide nucleotidyltransferase	identified by similarity to SP:P05055; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	polynucleotide phosphorylase, (PNPase)	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; match to protein family HMM TIGR01369 polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase protein	Polyribonucleotide nucleotidyltransferase	Mb2806c, gpsI, len: 752 aa. Equivalent to Rv2783c, len: 752 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 752 aa overlap). Probable gpsI, polyribonucleotide nucleotidyltransferase (EC 2.7.7.8; 2.7.6.-), equivalent to Q9CCF8|GPSI|ML0854 (alias O32966) PUTATIVE POLYRIBONUCLEOTIDE PHOSPHORYLASE / GUANOSINE PENTAPHOSPHATE SYNTHETASE from Mycobacterium leprae (773 aa), FASTA scores: opt: 4304, E(): 0, (89.95% identity in 757 aa overlap). Also highly similar to others e.g.  O86656|GPSI GUANOSINE PENTAPHOSPHATE SYNTHETASE/ POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (FRAGMENT) from Streptomyces coelicolor (716 aa), FASTA scores: opt: 3393, E(): 5.8e-192, (72.77% identity in 718 aa overlap); Q53597|GPSI GUANOSINE PENTAPHOSPHATE SYNTHETASE from Streptomyces antibioticus (740 aa), FASTA scores: opt: 3314, E(): 2.6e-187, (70.55% identity in 733 aa overlap); P72659|PNP|SLL1043 POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE from Synechocystis sp. strain PCC 6803 (718 aa), FASTA scores: opt: 1244, E(): 1.7e-65, (45.05% identity in 750 aa overlap); etc. Note that S.  antibioticus guanosine pentaphosphate synthetase is a multifunctional enzyme that also acts as a polyribonucleotide nucleotidyltransferase. Start site chosen by homology from several alternatives. BIFUNCTIONAL PROTEIN POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE GPSI: GUANOSINE PENTAPHOSPHATE SYNTHETASE + POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (POLYNUCLEOTIDE PHOSPHORYLASE) (PNPASE)	InterProMatches:IPR001247, IPR001247; necessary for competence development (expression of late competence genes comG and comK, requirement bypassed by a mecA disruption) may be necessary for modification of the srfA transcript (stabilization or translation activation), Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396) polynucleotide phosphorylase (PNPase)	polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark polynucleotide phosphorylase	Polynucleotide phosphorylase	Polyribonucleotide nucleotidyltransferase	
CHLTR00863	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30s ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	conserved gene 30S ribosomal protein S15 (S15/S13E)	30S ribosomal protein S15	30S ribosomal protein S15	identified by match to protein family HMM PF00312; match to protein family HMM TIGR00952 ribosomal protein S15	30S ribosomal protein S15	SSU ribosomal protein S15P	30S ribosomal protein S15	identified by similarity to SP:P02371; match to protein family HMM PF00312; match to protein family HMM TIGR00952 ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	identified by match to protein family HMM PF00312; match to protein family HMM TIGR00952 ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	Mb2808c, rpsO, len: 89 aa. Equivalent to Rv2785c, len: 89 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 89 aa overlap). Probable rpsO, 30s ribosomal protein S15, equivalent to O32967|RS15_MYCLE|RPSO|ML0853|MLCB22.28c 30S RIBOSOMAL PROTEIN S15 from Mycobacterium leprae (89 aa), FASTA scores: opt: 522, E(): 7.4e-34, (92.15% identity in 89 aa overlap). Also highly similar to many e.g.  O86655|RS15_STRCO|RPSO|SC3C3.22 from Streptomyces coelicolor (95 aa), FASTA scores: opt: 408, E(): 6.7e-25, (62.9% identity in 89 aa overlap); P05766|RS15_BACST|RPSO from Bacillus stearothermophilus (88 aa), FASTA scores: opt: 385, E(): 4e-23, (62.5% identity in 88 aa overlap); P21473|RS15_BACSU|RPSO from Bacillus subtilis (88 aa), FASTA scores: opt: 351, E(): 1.9e-20, (57.95% identity in 88 aa overlap); P02371|RS15_ECOLI|RPSO|SEC|B3165 from Escherichia coli strain K12 (88 aa), FASTA scores: opt: 295, E(): 4.5e-22, (52.3% identity in 88 aa overlap); etc.  Contains PS00362 Ribosomal protein S15 signature. BELONGS TO THE S15P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 30S RIBOSOMAL PROTEIN S15 RPSO	InterProMatches:IPR005290; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein S15 (BS18)	
CHLTR00864	Cytosine deaminase	Cytidine and deoxycytidylate deaminase zinc- binding region	Similar to cytosine deaminase	Putative cytosine/adenosine deaminase protein	Similar to YfhC protein	similar to hypothetical proteins hypothetical protein	conserved gene deaminase	similar to hypothetical proteins hypothetical protein	Cytosine/adenosine deaminase	identified by match to protein family HMM PF00383 cytidine/deoxycytidylate deaminase family protein	tRNA-specific adenosine deaminase	putative cytidine and deoxycytidylate deaminase	identified by match to protein family HMM PF00383 cytidine and deoxycytidylate deaminase family protein	cytidine/deoxycytidylate deaminase family protein, putative	Putative uncharacterized protein	Cu binding protein (Mn oxidation	CYTOSINE DEAMINASE	Cytosine/adenosine deaminase	Putative uncharacterized protein	Cytosine deaminase protein	Cytidine and deoxycytidylate deaminase family protein	Mb3778c, -, len: 152 aa. Equivalent to Rv3752c, len: 152 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 152 aa overlap). Probable cytidine/deoxycytidylate deaminase (EC 3.5.4.-), equivalent to Q9CB32|ML2474 POSSIBLE CYTIDINE/DEOXYCYTIDYLATE DEAMINASE from Mycobacterium leprae (171 aa), FASTA scores: opt: 890, E(): 1.6e-50, (88.1% identity in 151 aa overlap). Also highly similar to other deaminases and hypothetical proteins e.g.  Q9AK79|2SCD60.04c PUTATIVE DEAMINASE from Streptomyces coelicolor (143 aa), FASTA scores: opt: 559, E(): 2.9e-29, (66.45% identity in 146 aa overlap); Q9F9W7 CYTOSINE DEAMINASE from Bifidobacterium longum (143 aa) FASTA scores: opt: 512, E(): 3.1e-26, (54.85% identity in 144 aa overlap); P21335|YAAJ_BACSU HYPOTHETICAL 17.8 KDA PROTEIN from Bacillus subtilis (161 aa), FASTA scores: opt: 425, E(): 1.4e-20, (47.7% identity in 151 aa overlap); AAK74212|SP0020 CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN from Streptococcus pneumoniae (155 aa), FASTA scores: opt: 401, E(): 4.7e-19, (46.25% identity in 147 aa overlap); P30134|YFHC_ECOLI|B2559 HYPOTHETICAL 20.0 KDA PROTEIN from Escherichia coli strain K12 (178 aa), FASTA scores: opt: 397, E(): 9.5e-19, (47.0% identity in 149 aa overlap); etc. Contains PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature.  BELONGS TO THE CYTIDINE AND DEOXYCYTIDYLATE DEAMINASES FAMILY. POSSIBLE CYTIDINE/DEOXYCYTIDYLATE DEAMINASE	putative tRNA specific adenosine deaminase; Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity (GO:0016787) putative Cytidine/deoxycytidylate deaminase, zinc-binding region YaaJ	cytosine/adenosine deaminase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark cytosine deaminase	COG0590 Cytosine-adenosine deaminases cytidine-deoxycytidylate deaminase	Putative uncharacterized protein yhcI	IPR002125: Cytidine/deoxycytidylate deaminase, zinc-binding region putative Cytosine/adenosine deaminase	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	
CHLTR00866	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative integral membrane protein	Putative integral membrane protein	Putative integral membrane protein	
CHLTR00865	Putative uncharacterized protein	conserved hypothetical protein	hypothetical cytosolic protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00867	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00868	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00869	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00870	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00872	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Mb2886c, mapB, len: 285 aa. Equivalent to Rv2861c, len: 285 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 285 aa overlap). Probable mapB (alternate gene name: map), methionine aminopeptidase (EC 3.4.11.18), equivalent to Q9CBU7|MAPB|ML1576 METHIONINE AMINOPEPTIDASE from Mycobacterium leprae (285 aa), FASTA scores: opt: 1729, E(): 1e-99, (89.75% identity in 283 aa overlap). Also highly similar to many e.g. Q9RKR2|MAP3 from Streptomyces coelicolor (285 aa), FASTA scores: opt: 1385, E(): 2e-78, (70.65% identity in 283 aa overlap); Q9SW64|C7A10.320|AT4G37040 from Arabidopsis thaliana (Mouse-ear cress) (305 aa), FASTA scores: opt: 914, E(): 3e-49, (50.35% identity in 286 aa overlap); P07906|AMPM_ECOLI|MAP|B0168|Z0178|ECS0170 from Escherichia coli strains K12 and O157:H7 (264 aa), FASTA scores: opt: 793, E(): 8.5e-42, (51.0% identity in 245 aa overlap); etc. BELONGS TO PEPTIDASE FAMILY M24A; ALSO KNOWN AS THE MAP FAMILY 1. COFACTOR: COBALT; BINDS 2 IONS PER SUBUNIT.  Note that this gene has an N-terminal extension present in the human map, but not in the prokaryotic map's. An alternative start, with RBS, will give a protein equivalent to the shorter prokaryotic map's. PROBABLE METHIONINE AMINOPEPTIDASE MAPB (MAP) (PEPTIDASE M)	Methionine aminopeptidase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark methionine aminopeptidase	IPR000994: Metallopeptidase M24; IPR001714: Methionine aminopeptidase; IPR002467: Methionine aminopeptidase, subfamily 1 methionine aminopeptidase	Methionine aminopeptidase	similar to Salmonella typhi CT18 methionine aminopeptidase methionine aminopeptidase	Similar to, but extended 40 amino acids at the N-terminus, Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri methionine aminopeptidase Map or b0168 or c0203 or z0178 or ecs0170 or sf0158 or s0161 SWALL:AMPM_ECOLI (SWALL:P07906) (264 aa) fasta scores: E(): 1.4e-37, 44.22% id in 251 aa, and to Chlamydophila caviae methionine aminopeptidase, type I map or cca00752 SWALL:Q822D1 (EMBL:AE016996) (291 aa) fasta scores: E(): 1.7e-111, 91.06% id in 291 aa, and to Chlamydia pneumoniae methionine aminopeptidase Map or cpn1009 or cp0844 SWALL:AMPM_CHLPN (SWALL:Q9Z6Q0) (291 aa) fasta scores: E(): 5.5e-98, 80.96% id in 289 aa putative methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Similar to sp|Q9ZCD3|AMPM_RICPR rc||map; Ortholog to ERGA_CDS_08550 Methionine aminopeptidase	COG0024 Map methionine aminopeptidase similar to NP_221173.1; go_process: 0006508 methionine aminopeptidase	Methionine aminopeptidase	COG0024 methionine aminopeptidase	MAP; peptidase M; Similar to: HI1722, AMPM_HAEIN methionine aminopeptidase	, predicted protein, len = 402 aa, probably methionine aminopeptidase 1; predicted pI = 6.3905; good similarity to several eukaryotic methionine aminopeptidase proteins; contains a metallopeptidase family M24 domain methionine aminopeptidase, putative metallo-peptidase, Clan MG, Family M24	Similar to Bacteroides thetaiotaomicron putative methionine aminopeptidase A BT0638 SWALL:AAO75745 (EMBL:AE016928) (307 aa) fasta scores: E(): 9.4e-101, 89.08% id in 284 aa, and to Clostridium perfringens probable methionine aminopeptidase Map or CPE1382 SWALL:Q8XKL2 (EMBL:AP003190) (289 aa) fasta scores: E(): 3.5e-67, 64.52% id in 265 aa, and to Chlamydia trachomatis methionine aminopeptidase Map or CT851 SWALL:AMPM_CHLTR (SWALL:O84859) (291 aa) fasta scores: E(): 2e-41, 44.48% id in 272 aa putative aminopeptidase	Methionine aminopeptidase Map protein	
CHLTR00871	Putative uncharacterized protein	myosin heavy chain	hypothetical protein	Putative integral membrane protein	Putative integral membrane protein	Putative integral membrane protein	
CHLTR00873	UPF0056 membrane protein CT_852	YhgN protein	Putative multiple antibiotic resistance (Marc)- relateds transmembrane protein	Putative uncharacterized protein	Putative uncharacterized protein	Integral membrane protein of the MarC family	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YhgN or b3434 or z4798 or ecs4279 or sf3457 or s4306 SWALL:YHGN_ECOLI (SWALL:P46851) (197 aa) fasta scores: E(): 2.6e-18, 32.65% id in 196 aa, and to Chlamydophila caviae hypothetical protein cca00751 SWALL:Q822D2 (EMBL:AE016996) (202 aa) fasta scores: E(): 6.1e-70, 91.58% id in 202 aa, and to Chlamydia pneumoniae hypothetical protein cpn1010/cp0843/cpj1010 SWALL:YA10_CHLPN (SWALL:Q9Z6P9) (202 aa) fasta scores: E(): 1.1e-57, 76.61% id in 201 aa putative transmembrane protein	Putative uncharacterized protein	Possible MarC family transporter	MarC family integral membrane protein	multiple antibiotic resistance protein MarC	UPF0056 membrane protein bbp_399	conserved hypothetical protein	ortholog to Escherichia coli bnum: b3434; MultiFun: Cell structure 6.1 putative integral membrane protein	Code: U; COG: COG2095 conserved hypothetical protein	COG2095.1, MarC Multiple antibiotic transporter Multiple antibiotic transporter	Code: U; COG: COG2095 conserved hypothetical protein	Multiple antibiotic resistance (MarC)-related protein	multiple antibiotic resistance (MarC)-related proteins	conserved hypothetical protein TIGR00427 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427	conserved hypothetical protein	Multiple antibiotic resistance (MarC)-related proteins	Multiple antibiotic transporter COG2095	Code: U; COG: COG2095; orf conserved hypothetical protein	multiple antibiotic resistance protein	Multiple antibiotic resistance (MarC)-related proteins	putative MarC transporter family protein	conserved hypothetical protein TIGR00427 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427	
CHLTR00874	Putative uncharacterized protein	multiple antibiotic resistance protein	hypothetical membrane spanning protein	Putative integral membrane protein	Putative integral membrane protein	Putative integral membrane protein	
CHLTR00875	ABC transporter permease fused to pyrimidine biosynthesis enzyme	ABC transporter	ABC transporter permease protein ABC transporter substrate-binding protein	ABC transporter permease	ABC transporter permease	ABC transporter permease	
CHLTR00876	Fumarate hydratase class II	Fumarate hydratase class II	Fumarate hydratase class II	Fumarate hydratase class II	Fumarate hydratase class II	Fumarate hydratase class II	fumarate hydratase, class II	conserved gene fumarate hydratase	fumarate hydratase, class II	Fumarate hydratase	identified by similarity to EGAD:6510; match to protein family HMM PF00206; match to protein family HMM TIGR00979 fumarate hydratase, class II	fumarase	identified by match to protein family HMM PF00206; match to protein family HMM TIGR00979 fumarate hydratase, class II	Fumarate hydratase class II	Fumarate hydratase class II	Fumarate hydratase class II	identified by match to protein family HMM PF00206; match to protein family HMM TIGR00979 fumarate hydratase, class II	Fumarate hydratase, class II	Fumarate hydratase class II	Mb1128c, fum, len: 474 aa. Equivalent to Rv1098c, len: 474 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 474 aa overlap). Probable fum, fumarase (EC 4.2.1.2). Equivalent to AL049491|MLCB1222_11 Mycobacterium leprae (474 aa) (89.5 % identity in 467 aa overlap). Similar to many e.g. P14408|FUMH_RAT FUMARATE HYDRATASE, MITOCHONDRIAL PRECURSOR from Rattus norvegicus (507 aa), FASTA scores: opt: 1427, E(): 0, (52.3% identity in 461 aa overlap); and P05042|FUMC_ECOLI Fumarate hydratase class II from Escherichia coli (467 aa), FASTA scores: opt: 1355, E(): 0, (50.2% identity in 444 aa overlap). Contains PS00163 Fumarate lyases signature.  TBparse score is 0.886. PROBABLE FUMARASE FUM (Fumarate hydratase)	InterProMatches:IPR005677, IPR000362; Molecular Function: fumarate hydratase activity (GO:0004333), Biological Process: fumarate metabolism (GO:0006106), Cellular Component: TCA cycle enzyme complex (GO:0045239), Molecular Function: catalytic activity (GO:0003824) fumarate hydratase	fumarate hydratase	Fumarate hydratase class II	COG0114 Fumarase fumarate hydratase	Fumarate hydratase class II	IPR000362: Fumarate lyase; IPR003031: Delta crystallin fumarase C (fumarate hydratase Class II)	Fumarase	similar to Salmonella typhi CT18 fumarate hydratase class II fumarate hydratase class II	Similar to Rhizopus oryzae fumarate hydratase, mitochondrial precursor FumR SWALL:FUMH_RHIOR (SWALL:P55250) (494 aa) fasta scores: E(): 6.4e-97, 56.33% id in 458 aa, and to Chlamydophila caviae fumarate hydratase, class II FumC or cca00748 SWALL:Q822D5 (EMBL:AE016996) (460 aa) fasta scores: E(): 1.6e-172, 92.59% id in 459 aa, and to Chlamydia pneumoniae fumarate hydratase FumC or cpn1013 or cp0840 SWALL:Q9Z6P6 (EMBL:AE001681) (460 aa) fasta scores: E(): 7.2e-157, 83.04% id in 460 aa probable fumarate hydratase	
CHLTR00877	Sulfate Transporter	Similar to sulfate transporter hypothetical protein	conserved gene sulfate transporter	Similar to sulfate transporter hypothetical protein	identified by match to protein family HMM PF00860 xanthine/uracil permease family protein	Sulfate transporter/antisigma-factor antagonist	Sulfate transporter	IPR001902: Sulphate transporter; IPR002645: Sulfate transporter/antisigma-factor antagonist STAS putative SulP family transport protein	similar to Salmonella typhi CT18 putative sulphate transporter putative sulphate transporter	Similar to Synechocystis sp. low affinity sulfate transporter sll0834 SWALL:Q55415 (EMBL:D64003) (564 aa) fasta scores: E(): 6.4e-37, 28.31% id in 565 aa, and to Chlamydophila caviae sulfate transporter family protein cca00747 SWALL:Q822D6 (EMBL:AE016996) (566 aa) fasta scores: E(): 1.3e-206, 95.4% id in 566 aa, and to Chlamydia trachomatis sulfate transporter YchM or ct856 SWALL:O84864 (EMBL:AE001358) (567 aa) fasta scores: E(): 2.1e-188, 85.86% id in 566 aa putative sulfate transporter	Similar to Bacteroides thetaiotaomicron putative sulfate transporter, permease BT3181 SWALL:AAO78287 (EMBL:AE016939) (559 aa) fasta scores: E(): 8.6e-190, 88.17% id in 558 aa, and to Chlorobium tepidum sulfate transporter family protein CT0714 SWALL:Q8KEH5 (EMBL:AE012842) (618 aa) fasta scores: E(): 6.6e-107, 52.61% id in 555 aa, and to Clostridium perfringens probable sulfate permease CPE1480 SWALL:Q8XKC0 (EMBL:AP003190) (551 aa) fasta scores: E(): 2.1e-106, 51.79% id in 558 aa putative sulfate permease transmembrane protein	Sulfate permease and related transporters (MFS superfamily) SUL1 protein	Putative SulP family transport protein	Sulfate transporter	identified by match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815 sulfate permease family protein VCA0077	Sulphate anion transporter	sulfate permease, SulP family	sulfate transporter/antisigma-factor antagonist STAS	similar to gi|32470568|ref|NP_863238.1| [Staphylococcus epidermidis ATCC 12228], percent identity 40 in 364 aa, BLASTP E(): 2e-81 putative sulfate permease	Also contains a STAS domain found in the C-terminal region of sulfate transporters and antisigma-factor antagonists. Putative sulfate transporter, SulP family	Code: P; COG: COG0659 conserved hypothetical protein	sulphate transporter	Sulphate anion transporter	Sulphate anion transporter	Sulfate permease and related transporters (MFS superfamily) COG0659	sulfate transporter	transcript_id=ENSETET00000019200	sulphate transporter	Sulphate anion transporter	
CHLTR00878	IM protein	Mb2703, arsA, len: 429 aa. Equivalent to Rv2684, len: 429 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 429 aa overlap). Probable arsA, arsenic-transport integral membrane protein, equivalent to P46838|AG45_MYCLE|ML1036 46 KDA PROBABLE INTEGRAL MEMBRANE PROTEIN (antigen 45, a transmembrane protein related to arsenical pumps) from Mycobacterium leprae (429 aa), FASTA scores: opt: 2067, E(): 9.9e-118, (74.05% identity in 428 aa overlap); and upstream orf O07187|YQ85_MYCTU|ARSB|Rv2685|MT2759|MTCY05A6.06 PROBABLE INTEGRAL MEMBRANE 45.2 KDA PROTEIN ARSB from Mycobacterium tuberculosis (428 aa), FASTA scores: opt: 2148, E(): 1.3e-122, (76.58% identity in 427 aa overlap). Also highly similar to other proteins e.g. Q9UY19|PAB1107 TRANSPORT PROTEIN from Pyrococcus abyssi (425 aa), FASTA scores: opt: 1109, E(): 8.3e-60, (41.45% identity in 427 aa overlap); O59575|PH1912 HYPOTHETICAL 46.0 KDA PROTEIN from Pyrococcus horikoshii (424 aa), FASTA scores: opt: 1101, E(): 2.5e-59, (41.95% identity in 429 aa overlap); Q9KDI2|BH1231 HYPOTHETICAL 46.0 KDA PROTEIN from Bacillus halodurans (428 aa), FASTA scores: opt: 1018, E(): 2.7e-54, (38.9% identity in 427 aa overlap); etc. BELONGS TO THE NADC/P/PHO87 FAMILY OF TRANSPORTERS, P SUBFAMILY (ARS FAMILY). PROBABLE ARSENIC-TRANSPORT INTEGRAL MEMBRANE PROTEIN ARSA	Similar to Vibrio cholerae Na+/H+ antiporter NhaD or vca1015 SWALL:Q9EYG4 (EMBL:AF331042) (477 aa) fasta scores: E(): 1.7e-07, 26.74% id in 445 aa, and to Chlamydophila caviae Na+/H+ antiporter, putative cca00746 SWALL:Q822D7 (EMBL:AE016996) (420 aa) fasta scores: E(): 2.8e-167, 96.42% id in 420 aa, and to Chlamydia pneumoniae ct857 hypothetical protein cpn1015 or cpj1015 SWALL:Q9Z6P4 (EMBL:AE001682) (420 aa) fasta scores: E(): 3.3e-150, 85.68% id in 419 aa putative Na+/H+ antiporter	Similar to Q8D4S6 Na+/H+ antiporter NhaD from Vibrio vulnificus (478 aa). FASTA: opt: 1428 Z-score: 1679.2 E(): 1.2e-85 Smith-Waterman score: 1592; 50.617identity in 486 aa overlap Na+/H+ antiporter	Na+/H+ antiporter NhaD	identified by similarity to GP:3123728 Na+/H+ antiporter NhaD	Arsenical pump membrane protein	probable Na+/H+ antiporter	conserved hypothetical protein	Na+/H+ antiporter (NhaD family)	NhaD-like Na+/H+ antiporter	Evidence 2b : Function of strongly homologous gene; PubMedId : 11248196; Product type t : transporter Na+/H+ antiporter	Na+/H+ antiporter, NhaD	Arsenical pump membrane protein	Transporter, putative	Na+/H+ antiporter NhaD and related arsenite Permease COG1055	sodium/proton antiporter	conserved hypothetical protein	Citrate transporter PFAM: Arsenical pump membrane protein Citrate transporter KEGG: chy:CHY_2019 arsenic transporter family protein	Na+/H+ antiporter precursor	Na+/H+ antiporter (NhaD family)	Citrate transporter	Na+/H+ antiporter Similar to Q8D4S6 Na+/H+ antiporter NhaD from Vibrio vulnificus (478 aa). FASTA: opt: 1428 Z-score: 1679.2 E(): 1.2e-85 Smith-Waterman score: 1592; 50.617identity in 486 aa overlap	putative Na+/H+ antiporter	Citrate transporter identified by match to protein family HMM PF02040; match to protein family HMM PF03600	Na+/H+ antiporter KEGG: shm:Shewmr7_3245 Na+/H+ antiporter	NhaD Na+/H+ antiporter	arsenic-transport integral membrane protein ArsA membrane protein thought to be involved in active transport of arsenical compounds across the membrane (export): arsenic resistance by an export mechanism.  responsible for the translocation of the substrate across the membrane.	arsenic-transport integral membrane protein arsA Mapped to H37Rv Rv2684	
CHLTR00879	Protein CT_858	conserved hypothetical protein	peptidase S41 PFAM: peptidase S41 KEGG: cta:CTA_0936 periplasmic protease	periplasmic protease	Putative exported protease precursor	Putative exported protease precursor	Putative exported protease	
CHLTR00880	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	identified by match to protein family HMM PF02401; match to protein family HMM TIGR00216 4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	LytB protein homolog; Biological Process: isopentenyl diphosphate biosynthesis, mevalonate-independent (GO:0019288) isopentenyl diphosphate biosynthesis protein IspH	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark penicillin tolerance protein	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	regulates the activity of guanosine 3',5'-bispyrophosphate synthetase I (RelA)	4-Hydroxy-3-methylbut-2-enyl diphosphate reductase, IspH	similar to Salmonella typhi CT18 LytB protein LytB protein	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 IspH protein IspH or LytB or b0029 or c0033 or z0034 or ecs0032 SWALL:ISPH_ECOLI (SWALL:P22565) (316 aa) fasta scores: E(): 1.9e-46, 46.6% id in 309 aa, and to Chlamydophila caviae hydroxymethylbutenyldiphosphate reductase IspH or cca00744 SWALL:Q822D9 (EMBL:AE016996) (309 aa) fasta scores: E(): 7.1e-110, 93.83% id in 308 aa, and to Chlamydia pneumoniae IspH protein IspH or LytB or cpn1017 or cp0836 SWALL:ISPH_CHLPN (SWALL:Q9Z6P2) (310 aa) fasta scores: E(): 5.4e-86, 73.7% id in 308 aa putative IspH/LytB protein	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	LytB protein	Citation: McAteer et al. (2001) J. Bacteriol.  183(24):7403-7407. LytB protein homolog	Similar to sp|Q9RBJ0|ISPH_ACICA sp|P22565|ISPH_ECOLI sp|Q9HVM7|ISPH_PSEAE sp|Q9JR39|ISPH_NEIMA; Ortholog to ERGA_CDS_05330 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)	identified by match to protein family HMM PF02401; match to protein family HMM TIGR00216 hydroxymethylbutenyl pyrophosphate reductase	Evidence 1 : Function experimentally demonstrated in the studied organism; PubMedId : 10763755; Product type e : enzyme 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (also involved in penicillin tolerance and control of the stringent response. Seems to directly or indirectly interact with relA to maintain it in an inactive form during normal growth.)	COG0761 LytB penicillin tolerance protein; go_process: 0019288 lytB protein	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	Similar to: HI1007, ISPH_HAEIN 4-hydroxy-3-methylbut-2-enyl diphosphate reductase	Similar to Thermoanaerobacter tengcongensis 4-hydroxy-3-methylbut-2-enyl diphosphate reductase IspH or LytB or TTE1352 SWALL:ISPH_THETN (SWALL:Q8RA76) (288 aa) fasta scores: E(): 5.7e-28, 36.8% id in 288 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase IspH or LytB or B0029 or C0033 or Z0034 or ECS0032 SWALL:ISPH_ECOLI (SWALL:P22565) (316 aa) fasta scores: E(): 7.7e-18, 28.07% id in 285 aa putative isoprene biosynthesis related reductase protein	
CHLTR00881	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein copD2	Putative uncharacterized protein copD2	Putative uncharacterized protein copD2	
CHLTR00882	Putative uncharacterized protein	conserved hypothetical protein	hypothetical protein	Putative type III secretion translocator	Putative type III secretion translocator	Putative type III secretion translocator	
CHLTR00883	Low Calcium Response Protein H	Similar to Yersinia pestis low calcium response locus protein H LcrH or ypcd1.30c or y5048 or y0051 SWALL:LCRH_YERPE (SWALL:P21207) (168 aa) fasta scores: E(): 3e-05, 28.22% id in 124 aa, and to Chlamydophila caviae type III secretion chaperone cca00740 SWALL:Q822E3 (EMBL:AE016996) (172 aa) fasta scores: E(): 5.2e-61, 88.37% id in 172 aa, and to Chlamydia pneumoniae low calcium response protein H LcrH_2 or cpn1021 or cp0832 SWALL:Q9Z6N8 (EMBL:AE001682) (172 aa) fasta scores: E(): 5.8e-51, 75.43% id in 171 aa possible low calcium response locus protein	Low calcium response locus protein H	FOG: TPR repeat COG0457	type III secretion chaperone low calcium response protein H	yopB/yopD chaperone	type III secretion chaperone	YopB/D chaperone/regulatory protein	YopB/yopD chaperone	Type III secretion chaperone	Type III secretion chaperone	Putative uncharacterized protein	Type III secretion low calcium response chaperone LcrH/SycD	Type III secretion low calcium response chaperone LcrH	Chaperone CesD	LEE-encoded type III secretion system factor	Type III secretion chaperone	Type III secretion low calcium response chaperone LcrH/SycD, putative	Putative type III secretion low calcium response chaperone LcrH/SycD	chaperone CesD Integrative element ECO103_IE03	
CHLTR00884	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00885	Tyrosine recombinase xerD	Phage integrase:Phage integrase N-terminal SAM- like domain	integrase/recombinase	Tyrosine recombinase xerD	Tyrosine recombinase xerD	Integrase/recombinase xerD	Integrase/recombinase	identified by similarity to EGAD:108451; match to protein family HMM PF00589; match to protein family HMM PF02899 tyrosine recombinase XerD	Integrase/recombinase	Tyrosine recombinase xerD	Tyrosine recombinase xerD	Tyrosine site-specific integrase/recombinase protein	Tyrosine recombinase xerD	Mb1727, -, len: 311 aa. Equivalent to Rv1701, len: 311 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 311 aa overlap). Probable integrase/recombinase, similar to many e.g.  XERD_ECOLI|P21891 integrase/recombinase xerd (298 aa), FASTA scores: opt: 583, E(): 0, (41.8% identity in 311 aa overlap). Also similar to other Mycobacterium tuberculosis integrase/recombinase proteins RV2894c|MTCY274.25c (43.1% identity in 304 aa overlap); and Rv2646|MTCY441.16 phiRv2 integrase (31.1% identity in 161 aa overlap). Equivalent to Z95117|MLCB1351_7 from Mycobacterium leprae (316 aa) (85.4% identity in 316 aa overlap). PROBABLE INTEGRASE/RECOMBINASE	InterProMatches:IPR010998, IPR011010; involved in the resolution of chromosome dimers site-specific integrase/recombinase	site-specific tyrosine recombinase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark integrase-recombinase XerD	XerD COG4974 Site-specific recombinase XerD integrase-recombinase	IPR002104: Phage integrase; IPR004107: Phage integrase, N-terminal SAM-like recombinase, site-specific	Site-specific recombinase XerD	similar to Salmonella typhi CT18 site-specific integrase/recombinase site-specific integrase/recombinase	Similar to Proteus mirabilis site-specific recombinase XerD SWALL:O31206 (EMBL:AF033497) (313 aa) fasta scores: E(): 3e-35, 40.26% id in 298 aa, and to Chlamydophila caviae integrase/recombinase XerD or cca00737 SWALL:Q822E6 (EMBL:AE016996) (298 aa) fasta scores: E(): 1.3e-105, 86.53% id in 297 aa, and to Chlamydia pneumoniae integrase/recombinase XerD or cpn1024 or cp0828 SWALL:Q9Z6N5 (EMBL:AE001683) (301 aa) fasta scores: E(): 1.5e-88, 74.08% id in 301 aa putative site-specific recombinase	Integrase/recombinase XerD	similar to BR2031, integrase/recombinase XerD XerD, integrase/recombinase	Tyrosine recombinase xerD	Integrase /recombinase xerD	site-specific recombinase	Probable site-specific integrase/recombinase	Putative integrase/recombinase	


CHLTR00886	Putative uncharacterized protein	conserved hypothetical protein	hypothetical membrane associated protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
CHLTR00887	1,4-alpha-glucan-branching enzyme	1,4-alpha-glucan-branching enzyme	1,4-alpha-glucan-branching enzyme	14-alpha-glucan branching enzyme	1,4-alpha-glucan-branching enzyme	1,4-alpha-glucan-branching enzyme	1,4-alpha-glucan branching enzyme	1,4-alpha-glucan-branching enzyme	Mb1361c, glgB, len: 731 aa. Equivalent to Rv1326c, len: 731 aa, from Mycobacterium tuberculosis strain H37Rv, (99.6% identity in 731 aa overlap). Probable glgB, 1,4-alpha-glucan branching enzyme (EC 2.4.1.18), similar to others e.g. GLGB_ECOLI|P07762 Escherichia coli (728 aa), FASTA scores: opt: 2330, E(): 0, (48.7% identity in 719 aa overlap). Similar to other Mycobacterium tuberculosis putative alpha-glucan branching enzymes Rv1562c, Rv1563c. BELONGS TO FAMILY OF 13 GLYCOSYL HYDROLASES, ALSO KNOWN AS THE ALPHA-AMYLASE FAMILY. PROBABLE 1,4-ALPHA-GLUCAN BRANCHING ENZYME GLGB (GLYCOGEN BRANCHING ENZYME)	InterProMatches:IPR006407, similar to 1,4-alpha-glucan branching enzyme; introduces alpha-1,6-linkages in starch and glycogen,Molecular Function: 1,4-alpha-glucan branching enzyme activity (GO:0003844), Biological Process: glycogen biosynthesis (GO:0005978) Glycoside Hydrolase Family 13	GlgB hypothetical protein 1,4-alpha-glucan branching enzyme	IPR004193: Glycoside hydrolase, family 13, N-terminal; IPR006047: Alpha amylase, catalytic domain; IPR006407: 1,4-alpha-glucan branching enzyme;IPR006589: Alpha amylase, catalytic subdomain 1,4-alpha-glucan branching enzyme	similar to Salmonella typhi CT18 1,4-alpha-glucan branching enzyme 1,4-alpha-glucan branching enzyme	Similar to Streptomyces aureofaciens 1,4-alpha-glucan branching enzyme GlgB SWALL:GLGB_STRAU (SWALL:P52980) (764 aa) fasta scores: E(): 8.1e-131, 44.95% id in 723 aa, Chlamydia pneumoniae glucan branching enzyme GlgB or cpn0475 or cp0279 SWALL:Q9Z876 (EMBL:AE001632) (720 aa) fasta scores: E(): 0, 70.37% id in 719 aa and to Mycobacterium tuberculosis probable 1,4-alpha-glucan branching enzyme GlgB or rv1326c or mt1368 or mtcy130.11C SWALL:GLGB_MYCTU (SWALL:Q10625) (731 aa) fasta scores: E(): 3.2e-125, 45.21% id in 721 aa 1,4-alpha-glucan branching enzyme	1,4-alpha-glucan-branching enzyme	identified by match to PFAM protein family HMM PF00128 1,4-alpha-glucan branching enzyme	1,4-alpha-glucan branching enzyme	1,4-alpha-glucan-branching enzyme	1,4-alpha-glucan branching enzyme	1,4-alpha-glucan branching enzyme	glycogen branching enzyme; BE; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase; Similar to: HI1357, GLGB_HAEIN 1,4-alpha-glucan branching enzyme	1, 4-alpha-glucan branching enzyme GlgB protein	1,4-alpha-glucan-branching enzyme	Similar to Q8XPA2 Amylase from Clostridium perfringens (674 aa). FASTA: opt: 2904 Z-score: 3529.1 E(): 1.1e-188 Smith-Waterman score: 2904; 62.128 identity in 639 aa overlap 1,4-alpha-glucan branching enzyme	1,4-alpha-glucan-branching enzyme	1,4-alpha-glucan branching enzyme	1,4-alpha-glucan branching enzyme	1,4-alpha-glucan branching enzyme	identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR01515 1,4-alpha-glucan branching enzyme	
CHLTR00888	Membrane Thiol Protease	hypothetical protein	hypothetical protein	Putative membrane protein	Putative membrane protein	

CHLTR00889	Membrane Thiol Protease	Putative membrane protein	Putative membrane protein	
CHLTR00890	Probable outer membrane protein pmpE	polymorphic outer membrane protein	Polymorphic outer membrane protein precursor	Polymorphic outer membrane protein precursor	
CHLTR00891	Probable outer membrane protein pmpF	Polymorphic outer membrane protein precursor	Polymorphic outer membrane protein precursor	
CHLTR00892	Probable outer membrane protein pmpG	polymorphic outer membrane protein G/9 family	polymorphic outer membrane protein	Polymorphic outer membrane protein precursor	Polymorphic outer membrane protein precursor	
CHLTR00893	Probable outer membrane protein pmpH	polymorphic outer membrane protein H family	polymorphic outer membrane protein	Polymorphic outer membrane protein precursor	Polymorphic outer membrane protein precursor	Polymorphic outer membrane protein	


CHLTR00895	Probable outer membrane protein pmpI	polymorphic outer membrane protein	polymorphic outer membrane protein	Polymorphic outer membrane protein precursor	Polymorphic outer membrane protein precursor	


